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For: Andreace F, Pizzi C, Comin M. MetaProb 2: Metagenomic Reads Binning Based on Assembly Using Minimizers and K-Mers Statistics. J Comput Biol 2021;28:1052-1062. [PMID: 34448593 DOI: 10.1089/cmb.2021.0270] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]  Open
Number Cited by Other Article(s)
1
Tomasella F, Pizzi C. MetaComBin: combining abundances and overlaps for binning metagenomics reads. FRONTIERS IN BIOINFORMATICS 2025;5:1504728. [PMID: 40099113 PMCID: PMC11912761 DOI: 10.3389/fbinf.2025.1504728] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2024] [Accepted: 01/27/2025] [Indexed: 03/19/2025]  Open
2
Ndiaye M, Prieto-Baños S, Fitzgerald LM, Yazdizadeh Kharrazi A, Oreshkov S, Dessimoz C, Sedlazeck FJ, Glover N, Majidian S. When less is more: sketching with minimizers in genomics. Genome Biol 2024;25:270. [PMID: 39402664 PMCID: PMC11472564 DOI: 10.1186/s13059-024-03414-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Accepted: 10/01/2024] [Indexed: 10/19/2024]  Open
3
Mallawaarachchi V, Wickramarachchi A, Xue H, Papudeshi B, Grigson SR, Bouras G, Prahl RE, Kaphle A, Verich A, Talamantes-Becerra B, Dinsdale EA, Edwards RA. Solving genomic puzzles: computational methods for metagenomic binning. Brief Bioinform 2024;25:bbae372. [PMID: 39082646 PMCID: PMC11289683 DOI: 10.1093/bib/bbae372] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Revised: 06/05/2024] [Accepted: 07/15/2024] [Indexed: 08/03/2024]  Open
4
Rossignolo E, Comin M. Enhanced Compression of k-Mer Sets with Counters via de Bruijn Graphs. J Comput Biol 2024;31:524-538. [PMID: 38820168 DOI: 10.1089/cmb.2024.0530] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/02/2024]  Open
5
Cavattoni M, Comin M. ClassGraph: Improving Metagenomic Read Classification with Overlap Graphs. J Comput Biol 2023. [PMID: 37023405 DOI: 10.1089/cmb.2022.0208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/08/2023]  Open
6
Wickramarachchi A, Lin Y. Binning long reads in metagenomics datasets using composition and coverage information. Algorithms Mol Biol 2022;17:14. [PMID: 35821155 PMCID: PMC9277797 DOI: 10.1186/s13015-022-00221-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2021] [Accepted: 06/26/2022] [Indexed: 11/21/2022]  Open
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