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For: Margelevičius M. COMER2: GPU-accelerated sensitive and specific homology searches. Bioinformatics 2020;36:3570-3572. [PMID: 32167522 PMCID: PMC7267824 DOI: 10.1093/bioinformatics/btaa185] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2019] [Revised: 03/02/2020] [Accepted: 03/10/2020] [Indexed: 11/30/2022]  Open
Number Cited by Other Article(s)
1
Bulavaitė A, Dapkūnas J, Reškevičiūtė R, Dalgėdienė I, Valančauskas L, Baranauskienė L, Plečkaitytė M. Gardnerella fibrinogen-binding protein as a candidate adherence factor. Front Cell Infect Microbiol 2025;15:1556232. [PMID: 40406528 PMCID: PMC12095359 DOI: 10.3389/fcimb.2025.1556232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2025] [Accepted: 04/18/2025] [Indexed: 05/26/2025]  Open
2
Margelevičius M. GTalign: spatial index-driven protein structure alignment, superposition, and search. Nat Commun 2024;15:7305. [PMID: 39181863 PMCID: PMC11344802 DOI: 10.1038/s41467-024-51669-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Accepted: 08/14/2024] [Indexed: 08/27/2024]  Open
3
Tominaga K, Ozaki S, Sato S, Katayama T, Nishimura Y, Omae K, Iwasaki W. Frequent nonhomologous replacement of replicative helicase loaders by viruses in Vibrionaceae. Proc Natl Acad Sci U S A 2024;121:e2317954121. [PMID: 38683976 PMCID: PMC11087808 DOI: 10.1073/pnas.2317954121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Accepted: 03/14/2024] [Indexed: 05/02/2024]  Open
4
Olechnovič K, Valančauskas L, Dapkūnas J, Venclovas Č. Prediction of protein assemblies by structure sampling followed by interface-focused scoring. Proteins 2023;91:1724-1733. [PMID: 37578163 DOI: 10.1002/prot.26569] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Revised: 07/12/2023] [Accepted: 07/31/2023] [Indexed: 08/15/2023]
5
Dapkūnas J, Margelevičius M. The COMER web server for protein analysis by homology. Bioinformatics 2022;39:6909010. [PMID: 36519835 PMCID: PMC9825750 DOI: 10.1093/bioinformatics/btac807] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Revised: 11/04/2022] [Accepted: 12/14/2022] [Indexed: 12/23/2022]  Open
6
Laine E, Eismann S, Elofsson A, Grudinin S. Protein sequence-to-structure learning: Is this the end(-to-end revolution)? Proteins 2021;89:1770-1786. [PMID: 34519095 DOI: 10.1002/prot.26235] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2021] [Revised: 08/16/2021] [Accepted: 09/03/2021] [Indexed: 01/08/2023]
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