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For: Zhang K, Fenner K. enviRule: an end-to-end system for automatic extraction of reaction patterns from environmental contaminant biotransformation pathways. Bioinformatics 2023;39:btad407. [PMID: 37354527 PMCID: PMC10322654 DOI: 10.1093/bioinformatics/btad407] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Revised: 06/02/2023] [Accepted: 06/23/2023] [Indexed: 06/26/2023]  Open
Number Cited by Other Article(s)
1
Brydon L, Zhang K, Dobbie G, Taškova K, Wicker JS. Predictive modeling of biodegradation pathways using transformer architectures. J Cheminform 2025;17:21. [PMID: 39962584 PMCID: PMC11834682 DOI: 10.1186/s13321-025-00969-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2024] [Accepted: 02/06/2025] [Indexed: 02/20/2025]  Open
2
Hafner J, Lorsbach T, Schmidt S, Brydon L, Dost K, Zhang K, Fenner K, Wicker J. Advancements in biotransformation pathway prediction: enhancements, datasets, and novel functionalities in enviPath. J Cheminform 2024;16:93. [PMID: 39107805 PMCID: PMC11304562 DOI: 10.1186/s13321-024-00881-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Accepted: 07/09/2024] [Indexed: 08/10/2024]  Open
3
Yu Y, Trottmann NF, Schärer MR, Fenner K, Robinson SL. Substrate promiscuity of xenobiotic-transforming hydrolases from stream biofilms impacted by treated wastewater. WATER RESEARCH 2024;256:121593. [PMID: 38631239 DOI: 10.1016/j.watres.2024.121593] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Revised: 04/07/2024] [Accepted: 04/08/2024] [Indexed: 04/19/2024]
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