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For: Groza T, Gration D, Baynam G, Robinson PN. FastHPOCR: pragmatic, fast, and accurate concept recognition using the human phenotype ontology. Bioinformatics 2024;40:btae406. [PMID: 38913850 PMCID: PMC11227366 DOI: 10.1093/bioinformatics/btae406] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Revised: 05/18/2024] [Accepted: 06/19/2024] [Indexed: 06/26/2024]  Open
Number Cited by Other Article(s)
1
Groza T, Rayabsri W, Gration D, Hariram H, Jamuar SS, Baynam G. First steps toward building natural history of diseases computationally: Lessons learned from the Noonan syndrome use case. Am J Hum Genet 2025;112:1158-1172. [PMID: 40245863 PMCID: PMC12120186 DOI: 10.1016/j.ajhg.2025.03.014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2024] [Revised: 03/20/2025] [Accepted: 03/21/2025] [Indexed: 04/19/2025]  Open
2
Hier DB, Do TS, Obafemi-Ajayi T. A simplified retriever to improve accuracy of phenotype normalizations by large language models. Front Digit Health 2025;7:1495040. [PMID: 40103736 PMCID: PMC11913805 DOI: 10.3389/fdgth.2025.1495040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2024] [Accepted: 02/12/2025] [Indexed: 03/20/2025]  Open
3
Garcia BT, Westerfield L, Yelemali P, Gogate N, Andres Rivera-Munoz E, Du H, Dawood M, Jolly A, Lupski JR, Posey JE. Improving Automated Deep Phenotyping Through Large Language Models Using Retrieval Augmented Generation. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2024:2024.12.01.24318253. [PMID: 39677442 PMCID: PMC11643181 DOI: 10.1101/2024.12.01.24318253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2024]
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