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For: Orrell D, Ramsey S, de Atauri P, Bolouri H. A method for estimating stochastic noise in large genetic regulatory networks. Bioinformatics 2004;21:208-17. [PMID: 15319259 DOI: 10.1093/bioinformatics/bth479] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
Number Cited by Other Article(s)
1
Bakhteh S, Ghaffari-Hadigheh A, Chaparzadeh N. Identification of Minimum Set of Master Regulatory Genes in Gene Regulatory Networks. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2020;17:999-1009. [PMID: 30334767 DOI: 10.1109/tcbb.2018.2875692] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
2
Albert J, Rooman M. Probability distributions for multimeric systems. J Math Biol 2015;72:157-69. [PMID: 25840518 DOI: 10.1007/s00285-015-0877-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2014] [Revised: 03/06/2015] [Indexed: 11/24/2022]
3
Pahle J, Challenger JD, Mendes P, McKane AJ. Biochemical fluctuations, optimisation and the linear noise approximation. BMC SYSTEMS BIOLOGY 2012;6:86. [PMID: 22805626 PMCID: PMC3814289 DOI: 10.1186/1752-0509-6-86] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/10/2011] [Accepted: 07/17/2012] [Indexed: 01/11/2023]
4
Intosalmi J, Manninen T, Ruohonen K, Linne ML. Computational study of noise in a large signal transduction network. BMC Bioinformatics 2011;12:252. [PMID: 21693049 PMCID: PMC3142227 DOI: 10.1186/1471-2105-12-252] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2010] [Accepted: 06/21/2011] [Indexed: 11/10/2022]  Open
5
Stochastic and delayed stochastic models of gene expression and regulation. Math Biosci 2010;223:1-11. [DOI: 10.1016/j.mbs.2009.10.007] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2009] [Revised: 10/21/2009] [Accepted: 10/26/2009] [Indexed: 11/22/2022]
6
Auffray C, Nottale L. Scale relativity theory and integrative systems biology: 1. Founding principles and scale laws. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2007;97:79-114. [PMID: 17991512 DOI: 10.1016/j.pbiomolbio.2007.09.002] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
7
Ramsey S, Ozinsky A, Clark A, Smith K, de Atauri P, Thorsson V, Orrell D, Bolouri H. Transcriptional noise and cellular heterogeneity in mammalian macrophages. Philos Trans R Soc Lond B Biol Sci 2006;361:495-506. [PMID: 16524838 PMCID: PMC1609340 DOI: 10.1098/rstb.2005.1808] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
8
Mayawala K, Vlachos DG, Edwards JS. Spatial modeling of dimerization reaction dynamics in the plasma membrane: Monte Carlo vs. continuum differential equations. Biophys Chem 2006;121:194-208. [PMID: 16504372 DOI: 10.1016/j.bpc.2006.01.008] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2006] [Accepted: 01/19/2006] [Indexed: 12/17/2022]
9
Ramsey S, Orrell D, Bolouri H. Dizzy: stochastic simulation of large-scale genetic regulatory networks. J Bioinform Comput Biol 2005;3:415-36. [PMID: 15852513 DOI: 10.1142/s0219720005001132] [Citation(s) in RCA: 126] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2004] [Revised: 09/22/2004] [Accepted: 10/23/2004] [Indexed: 11/18/2022]
10
Imbeaud S, Auffray C. Functional Annotation: extracting functional and regulatory order from microarrays. Mol Syst Biol 2005;1:2005.0009. [PMID: 16729044 PMCID: PMC1681465 DOI: 10.1038/msb4100013] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]  Open
11
Lemerle C, Di Ventura B, Serrano L. Space as the final frontier in stochastic simulations of biological systems. FEBS Lett 2005;579:1789-94. [PMID: 15763553 DOI: 10.1016/j.febslet.2005.02.009] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2005] [Revised: 02/02/2005] [Accepted: 02/04/2005] [Indexed: 11/28/2022]
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