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For: Beargie C, Liu T, Corriveau M, Lee HY, Gott J, Bundschuh R. Genome annotation in the presence of insertional RNA editing. Bioinformatics 2008;24:2571-8. [PMID: 18819938 DOI: 10.1093/bioinformatics/btn487] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
Number Cited by Other Article(s)
1
Bondarenko NI, Nassonova ES, Mijanovic O, Glotova AA, Kamyshatskaya OG, Kudryavtsev AA, Masharsky AE, Polev DE, Smirnov AV. Mitochondrial Genome of Vannella croatica (Amoebozoa, Discosea, Vannellida). J Eukaryot Microbiol 2018;65:820-827. [PMID: 29655313 DOI: 10.1111/jeu.12523] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2017] [Revised: 04/02/2018] [Accepted: 04/02/2018] [Indexed: 11/30/2022]
2
Höner Zu Siederdissen C, Hofacker IL, Stadler PF. Product Grammars for Alignment and Folding. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2015;12:507-519. [PMID: 26357262 DOI: 10.1109/tcbb.2014.2326155] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
3
Stepanova VV, Gelfand MS. RNA editing: Classical cases and outlook of new technologies. Mol Biol 2014. [DOI: 10.1134/s0026893314010154] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
4
Kolesnikov AA, Gerasimov ES. Diversity of mitochondrial genome organization. BIOCHEMISTRY (MOSCOW) 2013;77:1424-35. [PMID: 23379519 DOI: 10.1134/s0006297912130020] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
5
Chen C, Frankhouser D, Bundschuh R. Comparison of insertional RNA editing in Myxomycetes. PLoS Comput Biol 2012;8:e1002400. [PMID: 22383871 PMCID: PMC3285571 DOI: 10.1371/journal.pcbi.1002400] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2011] [Accepted: 01/11/2012] [Indexed: 11/23/2022]  Open
6
Bundschuh R, Altmüller J, Becker C, Nürnberg P, Gott JM. Complete characterization of the edited transcriptome of the mitochondrion of Physarum polycephalum using deep sequencing of RNA. Nucleic Acids Res 2011;39:6044-55. [PMID: 21478163 PMCID: PMC3152335 DOI: 10.1093/nar/gkr180] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]  Open
7
Chateigner-Boutin AL, Small I. Organellar RNA editing. WILEY INTERDISCIPLINARY REVIEWS-RNA 2011;2:493-506. [PMID: 21957039 DOI: 10.1002/wrna.72] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
8
Arneth BM. Sequence variability and sequence evolution: an explanation of molecular polymorphisms and why many molecular structures can be preserved although they are not predominant. DNA Cell Biol 2010;29:571-6. [PMID: 20629558 DOI: 10.1089/dna.2009.0942] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
9
Hendrickson PG, Silliker ME. RNA editing is absent in a single mitochondrial gene of Didymium iridis. Mycologia 2010;102:1288-94. [PMID: 20943545 DOI: 10.3852/10-019] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
10
Traphagen SJ, Dimarco MJ, Silliker ME. RNA editing of 10 Didymium iridis mitochondrial genes and comparison with the homologous genes in Physarum polycephalum. RNA (NEW YORK, N.Y.) 2010;16:828-838. [PMID: 20159952 PMCID: PMC2844629 DOI: 10.1261/rna.1989310] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2009] [Accepted: 12/22/2009] [Indexed: 05/28/2023]
11
Gott JM, Somerlot BH, Gray MW. Two forms of RNA editing are required for tRNA maturation in Physarum mitochondria. RNA (NEW YORK, N.Y.) 2010;16:482-8. [PMID: 20106952 PMCID: PMC2822913 DOI: 10.1261/rna.1958810] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
12
Hendrickson PG, Silliker ME. RNA editing in six mitochondrial ribosomal protein genes of Didymium iridis. Curr Genet 2010;56:203-13. [PMID: 20169440 DOI: 10.1007/s00294-010-0292-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2009] [Revised: 01/29/2010] [Accepted: 02/01/2010] [Indexed: 11/30/2022]
13
Rhee AC, Somerlot BH, Parimi N, Gott JM. Distinct roles for sequences upstream of and downstream from Physarum editing sites. RNA (NEW YORK, N.Y.) 2009;15:1753-1765. [PMID: 19605532 PMCID: PMC2743052 DOI: 10.1261/rna.1668309] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2009] [Accepted: 06/06/2009] [Indexed: 05/28/2023]
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