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For: Yu WH, Høvik H, Chen T. A hidden Markov support vector machine framework incorporating profile geometry learning for identifying microbial RNA in tiling array data. Bioinformatics 2010;26:1423-30. [PMID: 20395286 DOI: 10.1093/bioinformatics/btq162] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
Number Cited by Other Article(s)
1
Characterization of a Signaling System in Streptococcus mitis That Mediates Interspecies Communication with Streptococcus pneumoniae. Appl Environ Microbiol 2019;85:AEM.02297-18. [PMID: 30389765 DOI: 10.1128/aem.02297-18] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2018] [Accepted: 10/25/2018] [Indexed: 12/14/2022]  Open
2
Wang S, Wang D, Li J, Huang T, Cai YD. Identification and analysis of the cleavage site in a signal peptide using SMOTE, dagging, and feature selection methods. Mol Omics 2018;14:64-73. [DOI: 10.1039/c7mo00030h] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
3
A Quorum-Sensing System That Regulates Streptococcus pneumoniae Biofilm Formation and Surface Polysaccharide Production. mSphere 2017;2:mSphere00324-17. [PMID: 28932816 PMCID: PMC5597970 DOI: 10.1128/msphere.00324-17] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2017] [Accepted: 07/31/2017] [Indexed: 12/13/2022]  Open
4
A positive feedback loop mediated by Sigma X enhances expression of the streptococcal regulator ComR. Sci Rep 2017;7:5984. [PMID: 28729683 PMCID: PMC5519730 DOI: 10.1038/s41598-017-04768-5] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2017] [Accepted: 05/08/2017] [Indexed: 02/06/2023]  Open
5
Comprehensive Transcriptome Profiles of Streptococcus mutans UA159 Map Core Streptococcal Competence Genes. mSystems 2016;1:mSystems00038-15. [PMID: 27822519 PMCID: PMC5069739 DOI: 10.1128/msystems.00038-15] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2015] [Accepted: 03/10/2016] [Indexed: 12/15/2022]  Open
6
Taskesen E, Wouters B, Delwel R. HAT: a novel statistical approach to discover functional regions in the genome. Methods Mol Biol 2013;1067:125-141. [PMID: 23975790 DOI: 10.1007/978-1-62703-607-8_9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
7
Comprehensive transcriptome analysis of the periodontopathogenic bacterium Porphyromonas gingivalis W83. J Bacteriol 2011;194:100-14. [PMID: 22037400 DOI: 10.1128/jb.06385-11] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
8
Yu WH, Høvik H, Olsen I, Chen T. Strand-specific transcriptome profiling with directly labeled RNA on genomic tiling microarrays. BMC Mol Biol 2011;12:3. [PMID: 21235785 PMCID: PMC3031212 DOI: 10.1186/1471-2199-12-3] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2010] [Accepted: 01/14/2011] [Indexed: 01/08/2023]  Open
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