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For: Larhlimi A, Basler G, Grimbs S, Selbig J, Nikoloski Z. Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks. ACTA ACUST UNITED AC 2013;28:i502-i508. [PMID: 22962473 PMCID: PMC3436808 DOI: 10.1093/bioinformatics/bts381] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Number Cited by Other Article(s)
1
Küken A, Nikoloski Z. Computational Approaches to Design and Test Plant Synthetic Metabolic Pathways. PLANT PHYSIOLOGY 2019;179:894-906. [PMID: 30647083 PMCID: PMC6393797 DOI: 10.1104/pp.18.01273] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2018] [Accepted: 01/09/2019] [Indexed: 05/05/2023]
2
Basler G, Küken A, Fernie AR, Nikoloski Z. Photorespiratory Bypasses Lead to Increased Growth in Arabidopsis thaliana: Are Predictions Consistent with Experimental Evidence? Front Bioeng Biotechnol 2016;4:31. [PMID: 27092301 PMCID: PMC4823303 DOI: 10.3389/fbioe.2016.00031] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2015] [Accepted: 03/24/2016] [Indexed: 11/13/2022]  Open
3
Baroukh C, Muñoz-Tamayo R, Bernard O, Steyer JP. Mathematical modeling of unicellular microalgae and cyanobacteria metabolism for biofuel production. Curr Opin Biotechnol 2015;33:198-205. [DOI: 10.1016/j.copbio.2015.03.002] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2014] [Revised: 02/18/2015] [Accepted: 03/05/2015] [Indexed: 11/24/2022]
4
Ravikrishnan A, Raman K. Critical assessment of genome-scale metabolic networks: the need for a unified standard. Brief Bioinform 2015;16:1057-68. [PMID: 25725218 DOI: 10.1093/bib/bbv003] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2014] [Indexed: 12/17/2022]  Open
5
Basler G. Computational prediction of essential metabolic genes using constraint-based approaches. Methods Mol Biol 2015;1279:183-204. [PMID: 25636620 DOI: 10.1007/978-1-4939-2398-4_12] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
6
McCloskey D, Palsson BØ, Feist AM. Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli. Mol Syst Biol 2013;9:661. [PMID: 23632383 PMCID: PMC3658273 DOI: 10.1038/msb.2013.18] [Citation(s) in RCA: 236] [Impact Index Per Article: 19.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2012] [Accepted: 03/11/2013] [Indexed: 02/07/2023]  Open
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