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For: Xiao F, Min X, Zhang H. Modified screening and ranking algorithm for copy number variation detection. ACTA ACUST UNITED AC 2014;31:1341-8. [PMID: 25542927 DOI: 10.1093/bioinformatics/btu850] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2014] [Accepted: 12/19/2014] [Indexed: 12/17/2022]
Number Cited by Other Article(s)
1
Li F, Xiao Y, Chen Z. Estimation of common breaks in linear panel data models via screening and ranking algorithm. Sci Rep 2025;15:11338. [PMID: 40175690 PMCID: PMC11965510 DOI: 10.1038/s41598-025-96322-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2024] [Accepted: 03/27/2025] [Indexed: 04/04/2025]  Open
2
Gudkov M, Thibaut L, Khushi M, Blue GM, Winlaw DS, Dunwoodie SL, Giannoulatou E. ConanVarvar: a versatile tool for the detection of large syndromic copy number variation from whole-genome sequencing data. BMC Bioinformatics 2023;24:49. [PMID: 36792982 PMCID: PMC9930243 DOI: 10.1186/s12859-023-05154-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2022] [Accepted: 01/19/2023] [Indexed: 02/17/2023]  Open
3
Cheng A, Mao D, Zhang Y, Glaz J, Ouyang Z. Translocation detection from Hi-C data via scan statistics. Biometrics 2022. [PMID: 35861170 DOI: 10.1111/biom.13724] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2019] [Accepted: 05/02/2022] [Indexed: 11/30/2022]
4
Cho H, Kirch C. Two-stage data segmentation permitting multiscale change points, heavy tails and dependence. ANN I STAT MATH 2021. [DOI: 10.1007/s10463-021-00811-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
5
Luo X, Qin F, Cai G, Xiao F. Integrating genomic correlation structure improves copy number variations detection. Bioinformatics 2021;37:312-317. [PMID: 32805016 DOI: 10.1093/bioinformatics/btaa737] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2020] [Revised: 07/23/2020] [Accepted: 08/12/2020] [Indexed: 12/16/2022]  Open
6
Hao N, Niu YS, Xiao F, Zhang H. A super scalable algorithm for short segment detection. STATISTICS IN BIOSCIENCES 2021;13:18-33. [PMID: 33737983 DOI: 10.1007/s12561-020-09278-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
7
Zhao Z, Yau CY. Alternating Pruned Dynamic Programming for Multiple Epidemic Change-Point Estimation. J Comput Graph Stat 2021. [DOI: 10.1080/10618600.2020.1868304] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
8
Yan Q, Liu Y, Liu S, Ma T. Change-point detection based on adjusted shape context cost method. Inf Sci (N Y) 2021. [DOI: 10.1016/j.ins.2020.08.112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
9
Xiao F, Luo X, Hao N, Niu YS, Xiao X, Cai G, Amos CI, Zhang H. An accurate and powerful method for copy number variation detection. Bioinformatics 2020;35:2891-2898. [PMID: 30649252 DOI: 10.1093/bioinformatics/bty1041] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2018] [Revised: 11/28/2018] [Accepted: 01/09/2019] [Indexed: 12/12/2022]  Open
10
Chen J, Deng S. Detection of Copy Number Variation Regions Using the DNA-Sequencing Data from Multiple Profiles with Correlated Structure. J Comput Biol 2018;25:1128-1140. [PMID: 30052071 DOI: 10.1089/cmb.2018.0053] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
11
Xiao F, Niu Y, Hao N, Xu Y, Jin Z, Zhang H. modSaRa: a computationally efficient R package for CNV identification. Bioinformatics 2018;33:2384-2385. [PMID: 28453611 DOI: 10.1093/bioinformatics/btx212] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2017] [Indexed: 01/02/2023]  Open
12
Song C, Min X, Zhang H. THE SCREENING AND RANKING ALGORITHM FOR CHANGE-POINTS DETECTION IN MULTIPLE SAMPLES. Ann Appl Stat 2017;10:2102-2129. [PMID: 28090239 DOI: 10.1214/16-aoas966] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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