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For: Miraskarshahi R, Zabeti H, Stephen T, Chindelevitch L. MCS2: minimal coordinated supports for fast enumeration of minimal cut sets in metabolic networks. Bioinformatics 2020;35:i615-i623. [PMID: 31510702 PMCID: PMC6612898 DOI: 10.1093/bioinformatics/btz393] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]  Open
Number Cited by Other Article(s)
1
Klamt S, Zanghellini J, von Kamp A. Minimal cut sets in metabolic networks: from conceptual foundations to applications in metabolic engineering and biomedicine. Brief Bioinform 2025;26:bbaf188. [PMID: 40263955 PMCID: PMC12014531 DOI: 10.1093/bib/bbaf188] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2025] [Revised: 03/19/2025] [Accepted: 04/01/2025] [Indexed: 04/24/2025]  Open
2
Radom M, Rybarczyk A, Piekarz I, Formanowicz P. Algorithms for evaluation of minimal cut sets. J Biomed Inform 2024;159:104740. [PMID: 39454703 DOI: 10.1016/j.jbi.2024.104740] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2024] [Revised: 10/02/2024] [Accepted: 10/16/2024] [Indexed: 10/28/2024]
3
Dehghan Manshadi M, Setoodeh P, Zare H. Rapid-SL identifies synthetic lethal sets with an arbitrary cardinality. Sci Rep 2022;12:14022. [PMID: 35982201 PMCID: PMC9388495 DOI: 10.1038/s41598-022-18177-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Accepted: 08/05/2022] [Indexed: 11/09/2022]  Open
4
Klamt S, Mahadevan R, von Kamp A. Speeding up the core algorithm for the dual calculation of minimal cut sets in large metabolic networks. BMC Bioinformatics 2020;21:510. [PMID: 33167871 PMCID: PMC7654042 DOI: 10.1186/s12859-020-03837-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2020] [Accepted: 10/23/2020] [Indexed: 12/16/2022]  Open
5
Schneider P, von Kamp A, Klamt S. An extended and generalized framework for the calculation of metabolic intervention strategies based on minimal cut sets. PLoS Comput Biol 2020;16:e1008110. [PMID: 32716928 PMCID: PMC7410339 DOI: 10.1371/journal.pcbi.1008110] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2020] [Revised: 08/06/2020] [Accepted: 06/30/2020] [Indexed: 02/07/2023]  Open
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