Locomotor adaptations in the Early Miocene species Diamantomys luederitzi (Rodentia, Mammalia) from Uganda (Napak)

The study of morphological adaptations to different ecological parameters among fossil vertebrates has been an important challenge in recent decades. In this paper, we focus on the link between morphological traits and locomotor behavior such as terrestriality, fossoriality and arboreality (including gliding). One of the most diverse groups in which various locomotor habits are represented is rodents, occupying a wide range of ecological niches. This work highlights morphological variations in skulls and humerus in extant rodents with varying locomotion, to predict this parameter in the extinct species Diamantomys luederitzi (Early Miocene, Napak, Uganda). Linear discriminant analysis and phylogenetic flexible discriminant analysis are used to analyze datasets obtained via traditional morphometry (measurements) and geometric morphometrics (landmarks). The results show good discrimination between locomotor groups for both structures in extant species: the skull has a wider and longer rostrum in terrestrial and fossorial taxa compared to arboreal rodents, is also higher and posteriorly wider in fossorial taxa; the distal humerus shows elongation of the trochlea and capitulum and a higher trochlea in fossorial and terrestrial species, allowing an increase of stability instead of mobility, which is more important in arboreal taxa for movement in trees. In D. luederitzi, all skull analyses except one predicted it as a terrestrial species, the other prediction as a glider was possibly linked to the diet. For the distal humerus, this species has been predicted as a terrestrial, fossorial and arboreal taxon in differing analyses, reflected by morphological traits represented in these different locomotor categories. These varying predictions could highlight the intraspecific variation in this fossil species as well as its locomotor repertoire, raising a discussion about the use of different methods in such analyses. In addition to these predictions, several issues are discussed, such as the presence of locomotor signal in the skull and its validity in locomotor studies, as well as the relevance of the use of fragmentary material in such analyses. The results obtained in this work highlight the importance of the locomotor signal in these structures, as well as the possibility of taking into account poorly preserved material, in particular the distal humerus.

Ecological correlates of the morphology of the auditory bulla in rodents: Application to the fossil record

For rodents, hearing is essential to survival. It enables predator evasion, prey detection, and conspecific recognition; it is also likely to be constrained by the physical environment. The resulting hypothetical link between tympanic bulla morphology and ecology has never been investigated across a broad array of rodent species before. Such link may enable the determination of the ecological affinities of many fossil species only known from partial skulls. In this study, we used geometric morphometrics to quantify the shape of the auditory bulla of 197 specimens representing 91 species from 17 families of extant rodents across four different locomotory modes. We used landmarks and semi-landmarks on the ventral and lateral views of the skull to capture morphological characteristics of the bulla and external auditory meatus (EAM). Our results demonstrate an association between bullar morphology and locomotion in rodents. Bullar shape enables the correct classification of 76% of the species in our training set. Fossorial taxa, in particular, show a characteristic morphology including an asymmetric bulla with a dorsally located and laterally expanded EAM that has a small opening diameter. A phylogenetically informed flexible discriminant analysis shows a weak phylogenetic effect on tympanic morphology. There is no evidence for differences in bullar hypertrophy across locomotory categories. The application of this approach to select fossil rodents from the Oligo-Miocene shows broad agreements with prior studies and yields new locomotory inferences for 14 fossil species, including the first proposed locomotion for members of the family Florentiamyidae. Such results call for the timing of burrowing diversification in rodents to be reevaluated.

Geometric differences between the crania of Australian hopping mice (Notomys, Murinae, Rodentia)

Half of the ten Australian hopping mice (Notomys) species have become extinct following the European colonisation of Australia, and most of the rest are threatened. This makes the study of their present diversity paramount. Although recent molecular phylogenies improved our understanding of the relationships among the species, detailed interspecific phenotypic comparisons are still lacking. This is the aim of the present study. Geometric morphometric methods were used to compare the crania of all five extant species (N. alexis, N. aquillo, N. cervinus, N. fuscus, and N. mitchellii) along with the extinct N. longicaudatus. Although previous work (based on traditional approaches) find intragenerically conserved crania, the present study discovers significant differences in cranial size and shape among Notomys species, with the ventral view being more distinct than the dorsal view. There was no evidence of sexual dimorphism in cranial size nor shape, and only a weak allometric effect. Most aspects of cranial shape differed among the species. The extant species pair that differed in cranial shape the most was N. aquilo – N. cervinus, differing in the foramen magnum, tympanic bulla, orbit, incisive foramen, and rostrum, along with cranial width, potentially a consequence of N. cervinus’ phylogenetic position, and N. aquilo’s s ecological uniqueness.

Desmodilliscus braueri crania compared to Pachyuromys duprasi (Desmodilliscini, Gerbillinae, Rodentia)

Molecular phylogenies support the monophyly of Desmodilliscus braueri and Pachyuromys duprasi as a clade basally split from all other gerbillines. While this monophyly supports their placement in a single tribe (Desmodilliscini), no morphological synapomorphies exist among desmodilliscines. This study compares the scale-independent cranial shapes of these two species using geometric morphometrics to determine how they differ and/or converge. Tribal synapomorphies, should they exist, may appear as interspecifically invariable cranial regions. No such invariable cranial regions were detected. The two species significantly differed in cranial size and shape. A small part of shape variation was allometric, with a weak unique allometric effect. No sexual size nor shape dimorphism was found. The sister taxa greatly differed in almost all cranial features, with Pachyuromys (when compared to Desmodilliscus) having a larger-sized cranium, with a larger bulla and suprameatal triangle, a more posteriorly placed palatine foramina, and more anteriorly shifted (and reduced) rostral cranial structures, due to being crowded by the hypertrophied bulla. Cranial variation patterns are consistent with the literature. The extreme morphological divergence among these species is explained by the distant divergence time and ecological differences. Absence of cranial shape synapomorphies does not preclude synapomorphies in other craniodental morphological features (e.g., detailed morphology of the dentition and cranial foramina) or in other morphological structures, such as the postcranial skeleton.

Habitat productivity is a poor predictor of body size in rodents

The “resource availability hypothesis” predicts occurrence of larger rodents in more productive habitats. This prediction was tested in a dataset of 1,301 rodent species. We used adult body mass as a measure of body size and normalized difference vegetation index (NDVI) as a measure of habitat productivity. We utilized a cross-species approach to investigate the association between these variables. This was done at both the order level (Rodentia) and at narrower taxonomic scales. We applied phylogenetic generalized least squares (PGLS) to correct for phylogenetic relationships. The relationship between body mas and NDVI was also investigated across rodent assemblages. We controlled for spatial autocorrelation using generalized least squares (GLS) analysis. The cross-species approach found extremely low support for the resource availability hypothesis. This was reflected by a weak positive association between body mass and NDVI at the order level. We find a positive association in only a minority of rodent subtaxa. The best fit GLS model detected no significant association between body mass and NDVI across assemblages. Thus, our results do not support the view that resource availability plays a major role in explaining geographic variation in rodent body size.

A GENERALIZED FRAMEWORK OF PATHLENGTH ASSOCIATED COMMUNITY ESTIMATION FOR BRAIN STRUCTURAL NETWORK

Diffusion MRI-derived brain structural network has been widely used in brain research and community or modular structure is one of popular network features, which can be extracted from network edge-derived pathlengths. Conceptually, brain structural network edges represent the connecting strength between pair of nodes, thus non-negative. The pathlength. Many studies have demonstrated that each brain network edge can be affected by many confounding factors (e.g. age, sex, etc.) and this influence varies on each edge. However, after applying generalized linear regression to remove those confounding's effects, some network edges may become negative, which leads to barriers in extracting the community structure. In this study, we propose a novel generalized framework to solve this negative edge issue in extracting the modular structure from brain structural network. We have compared our framework with traditional Q method. The results clearly demonstrated that our framework has significant advantages in both stability and sensitivity.