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Leichliter JN, Lüdecke T, Foreman AD, Bourgon N, Duprey NN, Vonhof H, Souksavatdy V, Bacon AM, Sigman DM, Tütken T, Martínez-García A. Tooth enamel nitrogen isotope composition records trophic position: a tool for reconstructing food webs. Commun Biol 2023; 6:373. [PMID: 37029186 PMCID: PMC10082005 DOI: 10.1038/s42003-023-04744-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Accepted: 03/21/2023] [Indexed: 04/09/2023] Open
Abstract
Nitrogen isotopes are widely used to study the trophic position of animals in modern food webs; however, their application in the fossil record is severely limited by degradation of organic material during fossilization. In this study, we show that the nitrogen isotope composition of organic matter preserved in mammalian tooth enamel (δ15Nenamel) records diet and trophic position. The δ15Nenamel of modern African mammals shows a 3.7‰ increase between herbivores and carnivores as expected from trophic enrichment, and there is a strong positive correlation between δ15Nenamel and δ15Nbone-collagen values from the same individuals. Additionally, δ15Nenamel values of Late Pleistocene fossil teeth preserve diet and trophic level information, despite complete diagenetic loss of collagen in the same specimens. We demonstrate that δ15Nenamel represents a powerful geochemical proxy for diet that is applicable to fossils and can help delineate major dietary transitions in ancient vertebrate lineages.
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Affiliation(s)
- Jennifer N Leichliter
- Organic Isotope Geochemistry Group, Climate Geochemistry Department, Max Planck Institute for Chemistry, 55128, Mainz, Germany.
- Emmy Noether Group for Hominin Meat Consumption, Max Planck Institute for Chemistry, 55128, Mainz, Germany.
- Institute of Geosciences, Department of Applied and Analytical Paleontology, Johannes Gutenberg University, 55128, Mainz, Germany.
| | - Tina Lüdecke
- Organic Isotope Geochemistry Group, Climate Geochemistry Department, Max Planck Institute for Chemistry, 55128, Mainz, Germany.
- Emmy Noether Group for Hominin Meat Consumption, Max Planck Institute for Chemistry, 55128, Mainz, Germany.
- Senckenberg Biodiversity and Climate Research Centre, 60325, Frankfurt, Germany.
| | - Alan D Foreman
- Organic Isotope Geochemistry Group, Climate Geochemistry Department, Max Planck Institute for Chemistry, 55128, Mainz, Germany
| | - Nicolas Bourgon
- Department of Human Evolution, Max Planck Institute for Evolutionary Anthropology, 04103, Leipzig, Germany
| | - Nicolas N Duprey
- Organic Isotope Geochemistry Group, Climate Geochemistry Department, Max Planck Institute for Chemistry, 55128, Mainz, Germany
| | - Hubert Vonhof
- Inorganic Gas Isotope Geochemistry Group, Climate Geochemistry Department, Max Planck Institute for Chemistry, 55128, Mainz, Germany
| | - Viengkeo Souksavatdy
- Department of Heritage, Ministry of Information, Culture and Tourism, 0100 Setthathirath Road, Vientiane Capital, Lao People's Democratic Republic
| | | | - Daniel M Sigman
- Department of Geosciences, Princeton University, Princeton, NJ, 08544, USA
| | - Thomas Tütken
- Institute of Geosciences, Department of Applied and Analytical Paleontology, Johannes Gutenberg University, 55128, Mainz, Germany
| | - Alfredo Martínez-García
- Organic Isotope Geochemistry Group, Climate Geochemistry Department, Max Planck Institute for Chemistry, 55128, Mainz, Germany
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Meiring C, Schurz H, van Helden P, Hoal E, Tromp G, Kinnear C, Kleynhans L, Glanzmann B, van Schalkwyk L, Miller M, Möller M. African wild dogs (Lycaon pictus) from the Kruger National Park, South Africa are currently not inbred but have low genomic diversity. Sci Rep 2022; 12:14979. [PMID: 36056068 PMCID: PMC9440078 DOI: 10.1038/s41598-022-19025-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2022] [Accepted: 08/23/2022] [Indexed: 12/24/2022] Open
Abstract
African wild dogs (Lycaon pictus) have undergone severe population reductions and are listed as endangered on the International Union for Conservation of Nature Red List. Small, isolated populations have the potential to suffer from threats to their genetic diversity that may impact species viability and future survival. This study provides the first set of population-wide genomic data to address conservation concerns for this endangered species. Whole genome sequencing data were generated for 71 free-ranging African wild dogs from the Kruger National Park (KNP), South Africa, and used to estimate important population genomic parameters. Genomic diversity metrics revealed that variation levels were low; however, this African wild dog population showed low levels of inbreeding. Very few first- and second-order relationships were observed in this cohort, with most relationships falling into the third-order or distant category. Patterns of homozygosity could have resulted from historical inbreeding or a loss in genome variation due to a population bottleneck. Although the results suggest that this stronghold African wild dog population maintains low levels of inbreeding, likely due to their cooperative breeding system, it may lead to a continuous population decline when a reduced number of suitable mates are available. Consequently, the low genomic variation may influence species viability over time. This study highlights the importance of assessing population genomic parameters to set conservation priorities. Future studies should include the investigation of the potential of this endangered species to adapt to environmental changes considering the low genomic diversity in this population.
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Affiliation(s)
- Christina Meiring
- DSI-NRF Centre of Excellence for Biomedical Tuberculosis Research, South African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, PO Box 241, Francie van Zijl Drive, Cape Town, 7500, South Africa.
| | - Haiko Schurz
- DSI-NRF Centre of Excellence for Biomedical Tuberculosis Research, South African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, PO Box 241, Francie van Zijl Drive, Cape Town, 7500, South Africa
| | - Paul van Helden
- DSI-NRF Centre of Excellence for Biomedical Tuberculosis Research, South African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, PO Box 241, Francie van Zijl Drive, Cape Town, 7500, South Africa
| | - Eileen Hoal
- DSI-NRF Centre of Excellence for Biomedical Tuberculosis Research, South African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, PO Box 241, Francie van Zijl Drive, Cape Town, 7500, South Africa
| | - Gerard Tromp
- DSI-NRF Centre of Excellence for Biomedical Tuberculosis Research, South African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, PO Box 241, Francie van Zijl Drive, Cape Town, 7500, South Africa
- South African Tuberculosis Bioinformatics Initiative (SATBBI), Faculty of Medicine and Health Sciences, Stellenbosch University, Francie van Zijl Drive, PO Box 241, Cape Town, 7500, South Africa
| | - Craig Kinnear
- DSI-NRF Centre of Excellence for Biomedical Tuberculosis Research, South African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, PO Box 241, Francie van Zijl Drive, Cape Town, 7500, South Africa
- Genomics Centre, South African Medical Research Council, Francie van Zijl Drive, PO Box 19070, Cape Town, 7500, South Africa
| | - Léanie Kleynhans
- DSI-NRF Centre of Excellence for Biomedical Tuberculosis Research, South African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, PO Box 241, Francie van Zijl Drive, Cape Town, 7500, South Africa
| | - Brigitte Glanzmann
- DSI-NRF Centre of Excellence for Biomedical Tuberculosis Research, South African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, PO Box 241, Francie van Zijl Drive, Cape Town, 7500, South Africa
- Genomics Centre, South African Medical Research Council, Francie van Zijl Drive, PO Box 19070, Cape Town, 7500, South Africa
| | - Louis van Schalkwyk
- Department of Agriculture, Land Reform and Rural Development, PO Box 12, Skukuza, 1350, South Africa
- Department of Veterinary Tropical Diseases, Faculty of Veterinary Science, University of Pretoria, Private Bag X04, Soutpan Road, Pretoria, 0110, South Africa
- Department of Migration, Max Planck Institute of Animal Behavior, Am Obstberg 1, 78315, Radolfzell, Germany
| | - Michele Miller
- DSI-NRF Centre of Excellence for Biomedical Tuberculosis Research, South African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, PO Box 241, Francie van Zijl Drive, Cape Town, 7500, South Africa
| | - Marlo Möller
- DSI-NRF Centre of Excellence for Biomedical Tuberculosis Research, South African Medical Research Council Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Medicine and Health Sciences, Stellenbosch University, PO Box 241, Francie van Zijl Drive, Cape Town, 7500, South Africa
- Centre for Bioinformatics and Computational Biology, Stellenbosch University, Private bag X1, Merriman Avenue, Stellenbosch, 7600, South Africa
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Feeding ecology of the endangered Asiatic wild dogs (Cuon alpinus) across tropical forests of the Central Indian Landscape. Sci Rep 2022; 12:14029. [PMID: 35982090 PMCID: PMC9388674 DOI: 10.1038/s41598-022-17906-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Accepted: 08/02/2022] [Indexed: 11/21/2022] Open
Abstract
Studies on resource utilisation by carnivores are essential as they aid in assessing their role in a community, by unravelling predator–prey relationships. Globally, prey depletion is one of the primary causes of declining Asiatic wild dog (dhole) populations. Therefore, it is essential to examine their diet across their range. Our study presents insights into dhole feeding ecology across multiple sites from the central Indian landscape of Maharashtra, India, for the first time. We conducted scat analysis using a subset of genetically identified scats and collected additional data from kills observed while tracking radio-collared dholes and other known packs from 2 study sites. We analysed 861 scats, and 191 dhole kills to identify species and age class of prey. We estimated the relative contribution of various prey, utilising non-linear biomass models of prey consumption. Overall, wild ungulates like sambar and chital were the principal prey in terms of biomass (sambar 61.08%; chital 19.08%) and number of prey consumed (sambar 39.28%; chital 13.83%). An analysis of kill data also suggested that dholes strongly preferred the two deer species; and differential selection of age classes was observed at the 2 study sites. Our study can potentially help manage and conserve this important population of an endangered carnivore.
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The Population Size and Distribution of Diurnal Large Wild Mammals in the Southern Great Rift Valley, Ethiopia. ScientificWorldJournal 2022; 2022:3050710. [PMID: 35264913 PMCID: PMC8898802 DOI: 10.1155/2022/3050710] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Revised: 01/29/2022] [Accepted: 02/05/2022] [Indexed: 11/18/2022] Open
Abstract
The study was carried out to assess the population size and distribution of diurnal large wild mammals in the southern Great Rift Valley, Ethiopia. The study area was stratified into four habitat types: riverine forest, ground-water forest, grassland, and bushland. Samples of animals were surveyed through the transect method. The total number of individuals belonging to the 15 species observed was 1681 and 1245 during the wet and dry seasons, respectively. Burchell's zebra (Equus burchellii), Anubis baboon (Papio anubis), Vervet monkey (Chlorocebus pygerythrus), and Grant's gazelle (Nanger granti) were the most abundant species, while Abyssinian hare (Lepus habessinicus) and Bush duiker (Sylvicapra grimmia) were the least abundant species. The highest number of species has been supported by the bushland habitat, followed by open grassland, riverine forest, and ground-water forest in both seasons. Despite the park being home to various types of mammalian species, there is a need for conservation actions by the park management and other concerned bodies for the survival of those species in the area.
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