Towards improved dynamic photosynthesis in C3 crops by utilizing natural genetic variation

Genetic diversity of leaf photosynthesis under fluctuating light conditions among temperate japonica rice varieties

Under field conditions, solar radiation on a crop canopy fluctuates according to clouds, wind, and self-shading. The slower response of photosynthesis compared with the rate of irradiation changes leads to loss of photosynthetic carbon gain. Although some genetic differences in the rate of photosynthetic induction have been reported, the diversity among rice varieties is largely unknown. Here we evaluated genetic variation in the response of photosynthesis to a step increase in light intensity among 166 temperate japonica varieties including landraces and modern varieties. Large genetic variation in photosynthetic induction and less evidence of improvement across modern breeding programmes were acknowledged. In the correlation analysis between physiological traits for all varieties, the efficiency of non-stomatal processes was the major factor affecting the rate of induction. The landrace Aikokumochi, which has intermediate photosynthetic capacity, showed rapid photosynthetic induction-eight times that of the slowest variety. This was attributed to smaller non-stomatal limitation in the initial phase of induction and smaller stomatal limitation in the later phase than in reference varieties. Aikokumochi also had a greater photosynthetic CO2 gain without reduced water use efficiency under repeated fluctuating light. These findings demonstrate the importance of genetic resources to improve photosynthesis while maintaining water use efficiency under fluctuating light conditions.

An orphan gene BOOSTER enhances photosynthetic efficiency and plant productivity

Organelle-to-nucleus DNA transfer is an ongoing process playing an important role in the evolution of eukaryotic life. Here, genome-wide association studies (GWAS) of non-photochemical quenching parameters in 743 Populus trichocarpa accessions identified a nuclear-encoded genomic region associated with variation in photosynthesis under fluctuating light. The identified gene, BOOSTER (BSTR), comprises three exons, two with apparent endophytic origin and the third containing a large fragment of plastid-encoded Rubisco large subunit. Higher expression of BSTR facilitated anterograde signaling between nucleus and plastid, which corresponded to enhanced expression of Rubisco, increased photosynthesis, and up to 35% greater plant height and 88% biomass in poplar accessions under field conditions. Overexpression of BSTR in Populus tremula × P. alba achieved up to a 200% in plant height. Similarly, Arabidopsis plants heterologously expressing BSTR gained up to 200% in biomass and up to 50% increase in seed.

Difference in single-leaf and whole-plant photosynthetic response to light under steady and non-steady states in Arabidopsis thaliana

Although photosynthetic response to light has been extensively studied at the single-leaf level, little is known about the response at the whole-plant level. The present study aims to reveal the differences in the photosynthetic response to light under steady and non-steady states between the single leaf and whole plant in Arabidopsis thaliana and to investigate the mechanisms underlying these differences with respect to leaf aging. First, we developed an open system for gas exchange measurement of the whole plant of Arabidopsis. It enabled the photosynthetic response to dynamic environmental changes to be directly compared between the single leaf and whole plant. The photosynthetic response to the fluctuating light did not differ significantly between the single leaf and whole plant. This result is partly confirmed by the fact that the leaves at different ages showed no difference in the photosynthetic induction after a step change in light. On the other hand, light response analysis for steady-state photosynthesis showed a higher apparent quantum yield in the whole plant than in the single leaf. This difference might be attributed to the difference in the efficiency of light absorption and/or utilization of absorbed light among the leaves at different ages.

Cell size differences affect photosynthetic capacity in a Mesoamerican and an Andean genotype of Phaseolus vulgaris L

The efficiency of CO2 flux in the leaf is hindered by a several structural and biochemical barriers which affect the overall net photosynthesis. However, the dearth of information about the genetic control of these features is limiting our ability for genetic manipulation. We performed a comparative analysis between three-week-old plants of a Mesoamerican and an Andean cultivar of Phaseolus vulgaris at variable light and CO2 levels. The Mesoamerican bean had higher photosynthetic rate, maximum rate of rubisco carboxylase activity and maximum rate of photosynthetic electron transport at light saturation conditions than its Andean counterpart. Leaf anatomy comparison between genotypes showed that the Mesoamerican bean had smaller cell sizes than the Andean bean. Smaller epidermal cells in the Mesoamerican bean resulted in higher stomata density and consequently higher stomatal conductance for water vapor and CO2 than in the Andean bean. Likewise, smaller palisade and spongy mesophyll cells in the Mesoamerican than in the Andean bean increased the cell surface area per unit of volume and consequently increased mesophyll conductance. Finally, smaller cells in the Mesoamerican also increased chlorophyll and protein content per unit of leaf area. In summary, we show that different cell sizes controls the overall net photosynthesis and could be used as a target for genetic manipulation to improve photosynthesis.

How much could improving photosynthesis increase crop yields? A call for systems-level perspectives to guide engineering strategies

Global yield gaps can be reduced through breeding and improved agronomy. However, signs of yield plateaus from wheat and rice grown in intensively farmed systems indicate a need for new strategies if output is to continue to increase. Approaches to improve photosynthesis are suggested as a solution. Empirical evidence supporting this approach comes from small-scale free-CO2 air enrichment and transgenic studies. However, the likely achievable gains from improving photosynthesis are less understood. Models predict maximum increases in yield of 5.3-19.1% from genetic manipulation depending on crop, environment, and approach, but uncertainty remains in the presence of stress. This review seeks to provide context to the rationale for improving photosynthesis, highlight areas of uncertainty, and identify the steps required to create more accurate projections.

Photosynthetic response dynamics in the invasive species Tithonia diversifolia and two co-occurring native shrub species under fluctuating light conditions

To determine the invasiveness of invasive plants, many studies have compared photosynthetic traits or strategies between invasive and native species. However, few studies have compared the photosynthetic dynamics between invasive and native species during light fluctuations. We compared photosynthetic induction, relaxation dynamics and leaf traits between the invasive species, Tithonia diversifolia and two native species, Clerodendrum bungei and Blumea balsamifera, in full-sun and shady habitats. The photosynthetic dynamics and leaf traits differed among species. T. diversifolia showed a slower induction speed and stomatal opening response but had higher average intrinsic water-use efficiency than the two native species in full-sun habitats. Thus, the slow induction response may be attributed to the longer stomatal length in T. diversifolia. Habitat had a significant effect on photosynthetic dynamics in T. diversifolia and B. balsamifera but not in C. bungei. In shady habitat, T. diversifolia had a faster photosynthetic induction response than in full-sun habitat, leading to a higher average stomatal conductance during photosynthetic induction in T. diversifolia than in the two native species. In contrast, B. balsamifera had a larger stomatal length and slower photosynthetic induction and relaxation response in shady habitat than in full-sun habitat, resulting in higher carbon gain during photosynthetic relaxation. Nevertheless, in both habitats, T. diversifolia had an overall higher carbon gain during light fluctuations than the two native species. Our results indicated that T. diversifolia can adopt more effective response strategies under fluctuating light environments to maximize carbon gain, which may contribute to its successful invasion.

Dynamic responses of carbon assimilation and stomatal conductance in the future climate

This article comments on:

Wall S, Cockram J, Vialet-Chabrand S, Van Rie J, Galle A, Lawson T. 2023. The impact of growth at elevated [CO2] on stomatal anatomy and behavior differs between wheat species and cultivars. Journal of Experimental Botany 74, 2860–2874

The impact of growth at elevated [CO2] on stomatal anatomy and behavior differs between wheat species and cultivars

The ability of plants to respond to changes in the environment is crucial to their survival and reproductive success. The impact of increasing the atmospheric CO2 concentration (a[CO2]), mediated by behavioral and developmental responses of stomata, on crop performance remains a concern under all climate change scenarios, with potential impacts on future food security. To identify possible beneficial traits that could be exploited for future breeding, phenotypic variation in morphological traits including stomatal size and density, as well as physiological responses and, critically, the effect of growth [CO2] on these traits, was assessed in six wheat relative accessions (including Aegilops tauschii, Triticum turgidum ssp. Dicoccoides, and T. turgidum ssp. dicoccon) and five elite bread wheat T. aestivum cultivars. Exploiting a range of different species and ploidy, we identified key differences in photosynthetic capacity between elite hexaploid wheat and wheat relatives. We also report differences in the speed of stomatal responses which were found to be faster in wheat relatives than in elite cultivars, a trait that could be useful for enhanced photosynthetic carbon gain and water use efficiency. Furthermore, these traits do not all appear to be influenced by elevated [CO2], and determining the underlying genetics will be critical for future breeding programmes.

Enhancing photosynthesis and yield in rice with improved N use efficiency

The success of the dwarf breeding of rice, called the Green Revolution in Asia, resulted from increased source and sink capacities depending on significant inputs of N fertilizer. Although N fertilization is essential for increasing cereal production, large inputs of N application have significantly impacted the environment. Transgenic rice overproducing Rubisco has demonstrated increased yields with improved N use efficiency for increasing biomass production under high N fertilization in a paddy field. A large grain cultivar, Akita 63, had a high yield by enlarging the sink capacity without photosynthesis improvement. However, source capacity strongly limited the yield potential under high N fertilization. Enhancing photosynthesis is important for further increasing the yield of current high-yielding cultivars. Developing innovative rice plants with both high photosynthesis and large sink capacity is essential.