Small subunit rRNA gene sequence of Crassostrea virginica (Gmelin) and a comparison with similar sequences from other bivalve molluscs

Molecular evidence on the evolution of the Bivalvia

Despite widespread agreement on the monophyly of several major taxa of bivalves, others remain uncertain and the relationships among them are debated. The present study compares new and published morphological phylogenies with new analyses based on 18S gene sequences.

All but one family and all superfamilies in the Bivalvia were monophyletic in all the analyses. Several higher taxa, including most subclasses and orders, were also resolved as monophyletic. Only Myoida shows strong evidence for polyphyly, with at least two origins from Veneroida. Autobranchia was supported as monophyletic in the parsimony analyses. Within Pteriomorphia, Ostreoida is the sister taxon of Pterioida, if not derived from within it, rather than closest to Pectinoida. The numerous points of agreement with morphology based analyses suggests that both types of evidence are converging on a common phylogeny; however, differences remain to be resolved by further study.

Molecular phylogeny of the Bivalvia inferred from 18S rDNA sequences with particular reference to the Pteriomorphia

The classification of the Pteriomorphia, a major division of the Bivalvia with Ordovician origins, is controversial both among palaeontologists and neontologists. To elucidate phylogenetic relationships new near-complete 18S rDNA sequences of 26 Pteriomorphia, three Protobranchia, three Heterodonta, one Anomalodesmata and three Scaphopoda were obtained, aligned with 71 other published molluscan sequences, and analysed with parsimony, maximum likelihood and spectral analysis. Although Bivalvia appear diphyletic due to heterogeneity of substitution rates among lineages, monophyly of Protobranchia, Heteroconchia and Pteriomorphia is supported. The heteroconch Lucinida, Myoida and Venerida are not monophyletic, and Anomalodesmata arise from within Heteroconchia. The basal nodes of Pteriomorphia have little support but two major clades, [Pinnoidea (Ostreoidea + Pterioidea)] and [(Anomioidea + Plicatuloidea) + (Limoidea + Pectinoidea)], are resolved with more confidence. The strongly supported clade of Anomioidea + Plicatuloidea, the separation of Pinnoidea from Pterioidea and most of the intrafamiliar relationships are not in accordance with morphological classifications. Combining these results with selected morphological characters, a phylogenetic hypothesis is proposed showing Mytiloidea and Arcoidea as the basal pteriomorph groups, the latter giving rise to the clade uniting the pinnoid-ostreoid-pterioid and the anomioid-limoid-pectinoid lines.

Cryptosporidium parvum in oysters from commercial harvesting sites in the Chesapeake Bay

Oocysts of Cryptosporidium parvum, a zoonotic waterborne pathogen, can be removed by bivalve molluscs from contaminated water and retained on gills and in hemolymph. We identified oocysts of C. parvum in oysters from seven sites in the Chesapeake Bay area. These findings document the presence of C. parvum infectious for humans in oysters intended for human consumption.

What can 18S rDNA do for bivalve phylogeny?

Molecular characteristics, especially 18S rDNA sequences, may be of great value for the study of bivalve evolution and its numerous morphological convergencies once the reliability of these data can be evaluated. The analysis of 11 published complete molluscan sequences and two new ones, Arca noae and Atrina pectinata, reveals considerable differences in relative substitution rates. The gastropod and eulamellibranch species have the fastest and Atrina species have the slowest rates. Two methods are used to assess the information contents of the dataset in addition to bootstrap analysis, spectral analysis, and the "pattern of resolved nodes" technique. Tree reconstructions by parsimony, neighbor-joining, and maximum-likelihood differ in regard to the position of the eulamellibranch family Mactridae and of Crassostrea. Although there is a signal for the monophyly of Bivalvia, Mactridae cluster with Gastropoda in most runs, rendering Bivalvia diphyletic. The position of Crassostrea was extremely variable, probably due to the high substitution rate of this species. Atrina roots deeper than Arca in all trees, although a corresponding signal in spectral analysis is absent. Phylogenetic signals among the three pectinid species are low but sufficient to resolve the branching pattern. The tree inferred from the 18S rDNA and from morphological data has Bivalvia monophyletic with a basal polytomy of Mactridae, Crassostrea, and the remaining Pteriomorphia, where Arca branches off before Atrina and the Pectinidae. Argopecten is sister group to the other two pectinids; 18S sequence data will have great impact on our understanding of bivalve phylogeny, but only when more sequences of similar substitution rates are available.

A sensitive and specific DNA probe for the oyster pathogen Haplosporidium nelsoni

Haplosporidium nelsoni is a pathogen of the eastern oyster, Crassostrea virginica, along the middle Atlantic coast of the U.S. Genomic DNA was extracted from H. nelsoni plasmodia and small subunit (SSU) rDNA was amplified by PCR, cloned and sequenced. The sequence of H. nelsoni SSU rDNA was aligned with that of another haplosporidian, Minchinia teredinis, and with SSU rDNA data of C. virginica and various protists in GenBank. A 21-base oligonucleotide unique to H. nelsoni, designated MSX1347, was commercially synthesized and tested for sensitivity and specificity. In dot blot hybridizations the probe detected 100 pg of cloned H. nelsoni rDNA and the presence of H. nelsoni in 1 microgram of genomic DNA from an infected oyster. It did not hybridize with 1 microgram of genomic DNA from uninfected C. virginica or with cloned SSU rDNA of M. teredinis. The probe was further tested for specificity with in situ hybridizations on AFA-fixed, paraffin-embedded tissue sections. The probe hybridized well with H. nelsoni plasmodia and immature spores, but poorly with mature spores. The probe did not hybridize with oyster tissue, with other common oyster parasites such as P. marinus or Nematopsis sp., or with the haplosporidians Haplosporidium louisiana from mud crabs (Panopeus spp.), Haplosporidium costale from C. virginica or M. teredinis from shipworms (Teredo spp.).