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For: Wu CH, Xiao C, Hou Z, Huang H, Barker WC. iProClass: an integrated, comprehensive and annotated protein classification database. Nucleic Acids Res 2001;29:52-4. [PMID: 11125047 PMCID: PMC29833 DOI: 10.1093/nar/29.1.52] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2000] [Revised: 10/27/2000] [Accepted: 10/27/2000] [Indexed: 11/13/2022]  Open
Number Cited by Other Article(s)
1
Malik A, Singh H, Andrabi M, Husain SA, Ahmad S. Databases and QSAR for Cancer Research. Cancer Inform 2017. [DOI: 10.1177/117693510600200002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
2
Carinhas N, Robitaille AM, Moes S, Carrondo MJT, Jenoe P, Oliveira R, Alves PM. Quantitative proteomics of Spodoptera frugiperda cells during growth and baculovirus infection. PLoS One 2011;6:e26444. [PMID: 22039490 PMCID: PMC3196586 DOI: 10.1371/journal.pone.0026444] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2011] [Accepted: 09/27/2011] [Indexed: 01/24/2023]  Open
3
Piovesan D, Martelli PL, Fariselli P, Zauli A, Rossi I, Casadio R. BAR-PLUS: the Bologna Annotation Resource Plus for functional and structural annotation of protein sequences. Nucleic Acids Res 2011;39:W197-202. [PMID: 21622657 PMCID: PMC3125743 DOI: 10.1093/nar/gkr292] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
4
Gabanyi MJ, Adams PD, Arnold K, Bordoli L, Carter LG, Flippen-Andersen J, Gifford L, Haas J, Kouranov A, McLaughlin WA, Micallef DI, Minor W, Shah R, Schwede T, Tao YP, Westbrook JD, Zimmerman M, Berman HM. The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods. JOURNAL OF STRUCTURAL AND FUNCTIONAL GENOMICS 2011. [PMID: 21472436 DOI: 10.1007/s10969-011-9106-2.] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Subscribe] [Scholar Register] [Indexed: 09/29/2022]
5
The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods. ACTA ACUST UNITED AC 2011;12:45-54. [PMID: 21472436 PMCID: PMC3123456 DOI: 10.1007/s10969-011-9106-2] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2010] [Accepted: 03/21/2011] [Indexed: 01/10/2023]
6
Bartoli L, Montanucci L, Fronza R, Martelli PL, Fariselli P, Carota L, Donvito G, Maggi GP, Casadio R. The bologna annotation resource: a non hierarchical method for the functional and structural annotation of protein sequences relying on a comparative large-scale genome analysis. J Proteome Res 2009;8:4362-71. [PMID: 19552451 DOI: 10.1021/pr900204r] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
7
Berman HM, Westbrook JD, Gabanyi MJ, Tao W, Shah R, Kouranov A, Schwede T, Arnold K, Kiefer F, Bordoli L, Kopp J, Podvinec M, Adams PD, Carter LG, Minor W, Nair R, La Baer J. The protein structure initiative structural genomics knowledgebase. Nucleic Acids Res 2009;37:D365-8. [PMID: 19010965 PMCID: PMC2686438 DOI: 10.1093/nar/gkn790] [Citation(s) in RCA: 83] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2008] [Accepted: 10/08/2008] [Indexed: 11/13/2022]  Open
8
Sulfate Activation Enzymes: Phylogeny and Association with Pyrophosphatase. J Mol Evol 2008;68:1-13. [DOI: 10.1007/s00239-008-9181-6] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2008] [Revised: 07/10/2008] [Accepted: 10/20/2008] [Indexed: 10/21/2022]
9
Berman HM. Harnessing knowledge from structural genomics. Structure 2008;16:16-8. [PMID: 18184578 DOI: 10.1016/j.str.2007.12.003] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
10
Malik A, Singh H, Andrabi M, Husain SA, Ahmad S. Databases and QSAR for cancer research. Cancer Inform 2007;2:99-111. [PMID: 19458762 PMCID: PMC2675501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
11
Yan Y, Moult J. Protein Family Clustering for Structural Genomics. J Mol Biol 2005;353:744-59. [PMID: 16185712 DOI: 10.1016/j.jmb.2005.08.058] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2005] [Revised: 08/18/2005] [Accepted: 08/24/2005] [Indexed: 11/26/2022]
12
Krause A, Stoye J, Vingron M. Large scale hierarchical clustering of protein sequences. BMC Bioinformatics 2005;6:15. [PMID: 15663796 PMCID: PMC547898 DOI: 10.1186/1471-2105-6-15] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2004] [Accepted: 01/22/2005] [Indexed: 11/10/2022]  Open
13
Kaplan N, Friedlich M, Fromer M, Linial M. A functional hierarchical organization of the protein sequence space. BMC Bioinformatics 2004;5:196. [PMID: 15596019 PMCID: PMC544566 DOI: 10.1186/1471-2105-5-196] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2004] [Accepted: 12/14/2004] [Indexed: 11/10/2022]  Open
14
Wu CH, Huang H, Nikolskaya A, Hu Z, Barker WC. The iProClass integrated database for protein functional analysis. Comput Biol Chem 2004;28:87-96. [PMID: 15022647 DOI: 10.1016/j.compbiolchem.2003.10.003] [Citation(s) in RCA: 60] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
15
Huang H, Hu ZZ, Suzek BE, Wu CH. The PIR integrated protein databases and data retrieval system. DATA SCIENCE JOURNAL 2004. [DOI: 10.2481/dsj.3.163] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
16
Huang H, Barker WC, Chen Y, Wu CH. iProClass: an integrated database of protein family, function and structure information. Nucleic Acids Res 2003;31:390-2. [PMID: 12520030 PMCID: PMC165491 DOI: 10.1093/nar/gkg044] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
17
Wu CH, Yeh LSL, Huang H, Arminski L, Castro-Alvear J, Chen Y, Hu Z, Kourtesis P, Ledley RS, Suzek BE, Vinayaka CR, Zhang J, Barker WC. The Protein Information Resource. Nucleic Acids Res 2003;31:345-7. [PMID: 12520019 PMCID: PMC165487 DOI: 10.1093/nar/gkg040] [Citation(s) in RCA: 265] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
18
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, Falquet L, Fleischmann W, Griffiths-Jones S, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Lonsdale D, Silventoinen V, Orchard SE, Pagni M, Peyruc D, Ponting CP, Selengut JD, Servant F, Sigrist CJA, Vaughan R, Zdobnov EM. The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res 2003;31:315-8. [PMID: 12520011 PMCID: PMC165493 DOI: 10.1093/nar/gkg046] [Citation(s) in RCA: 488] [Impact Index Per Article: 22.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]  Open
19
Rost B. Did evolution leap to create the protein universe? Curr Opin Struct Biol 2002;12:409-16. [PMID: 12127462 DOI: 10.1016/s0959-440x(02)00337-8] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
20
Mulder NJ, Apweiler R. Tools and resources for identifying protein families, domains and motifs. Genome Biol 2002;3:REVIEWS2001. [PMID: 11806833 PMCID: PMC150457 DOI: 10.1186/gb-2001-3-1-reviews2001] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
21
Wu CH, Huang H, Arminski L, Castro-Alvear J, Chen Y, Hu ZZ, Ledley RS, Lewis KC, Mewes HW, Orcutt BC, Suzek BE, Tsugita A, Vinayaka CR, Yeh LSL, Zhang J, Barker WC. The Protein Information Resource: an integrated public resource of functional annotation of proteins. Nucleic Acids Res 2002;30:35-7. [PMID: 11752247 PMCID: PMC99125 DOI: 10.1093/nar/30.1.35] [Citation(s) in RCA: 120] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
22
Barker WC, Garavelli JS, Hou Z, Huang H, Ledley RS, McGarvey PB, Mewes HW, Orcutt BC, Pfeiffer F, Tsugita A, Vinayaka CR, Xiao C, Yeh LS, Wu C. Protein Information Resource: a community resource for expert annotation of protein data. Nucleic Acids Res 2001;29:29-32. [PMID: 11125041 PMCID: PMC29802 DOI: 10.1093/nar/29.1.29] [Citation(s) in RCA: 53] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2000] [Accepted: 10/04/2000] [Indexed: 11/13/2022]  Open
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