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For: Shchyolkina AK, Timofeev EN, Lysov YP, Florentiev VL, Jovin TM, Arndt-Jovin DJ. Protein-free parallel triple-stranded DNA complex formation. Nucleic Acids Res 2001;29:986-95. [PMID: 11160932 PMCID: PMC29604 DOI: 10.1093/nar/29.4.986] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
Number Cited by Other Article(s)
1
Dalla Pozza M, Abdullrahman A, Cardin CJ, Gasser G, Hall JP. Three's a crowd - stabilisation, structure, and applications of DNA triplexes. Chem Sci 2022;13:10193-10215. [PMID: 36277639 PMCID: PMC9473520 DOI: 10.1039/d2sc01793h] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Accepted: 08/02/2022] [Indexed: 12/16/2022]  Open
2
Comparative studies on the binding interaction of two chiral Ru(II) polypyridyl complexes with triple- and double-helical forms of RNA. J Inorg Biochem 2020;214:111301. [PMID: 33166867 DOI: 10.1016/j.jinorgbio.2020.111301] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2020] [Revised: 10/12/2020] [Accepted: 10/25/2020] [Indexed: 12/27/2022]
3
Stabilization of an intermolecular RNA triplex by two novel binders Lys- and Arg-rich Ru(II) polypyridyl metallopeptides. J Inorg Biochem 2020;210:111171. [DOI: 10.1016/j.jinorgbio.2020.111171] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2020] [Revised: 06/25/2020] [Accepted: 06/25/2020] [Indexed: 11/23/2022]
4
Wang F, Ma S, Feng Y, Liu X, Tan L. Binding propterties of two Ru(II) polypyridyl complexes containing dppz units and fluorine groups with poly(U)·poly(A) ∗ poly(U) triplex. J Inorg Biochem 2019;197:110705. [PMID: 31071642 DOI: 10.1016/j.jinorgbio.2019.110705] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2019] [Revised: 04/26/2019] [Accepted: 05/01/2019] [Indexed: 01/14/2023]
5
Tang W, Zhu Z, Tan L. [Ru(bpy)2(7-CH3-dppz)](2+) and [Ru(phen)2(7-CH3-dppz)](2+) as metallointercalators that affect third-strand stabilization of the poly(U)˙poly(A)*poly(U) triplex. MOLECULAR BIOSYSTEMS 2017;12:1478-85. [PMID: 26999574 DOI: 10.1039/c6mb00094k] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
6
Zhu Z, Peng M, Zhang J, Tan L. Interaction of octahedral ruthenium(II) polypyridyl complex [Ru(bpy)2(PIP)]2+ with poly(U)·poly(A)*poly(U) triplex: Increasing third-strand stabilization of the triplex without affecting the stability of the duplex. J Inorg Biochem 2017;169:44-49. [PMID: 28104569 DOI: 10.1016/j.jinorgbio.2017.01.004] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2016] [Revised: 12/22/2016] [Accepted: 01/03/2017] [Indexed: 01/10/2023]
7
An overview on the interaction of phenazinium dye phenosafranine to RNA triple and double helices. Int J Biol Macromol 2016;86:345-51. [DOI: 10.1016/j.ijbiomac.2016.01.078] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2015] [Revised: 01/15/2016] [Accepted: 01/21/2016] [Indexed: 12/22/2022]
8
Li J, Sun Y, Zhu Z, Zhao H, Tan L. Binding properties of ruthenium(II) complexes [Ru(bpy)2(ppn)](2+) and [Ru(phen)2(ppn)](2+) with triplex RNA: As molecular "light switches" and stabilizers for poly(U)·poly(A)*poly(U) triplex. J Inorg Biochem 2016;161:128-33. [PMID: 27287059 DOI: 10.1016/j.jinorgbio.2016.04.024] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2016] [Revised: 04/12/2016] [Accepted: 04/18/2016] [Indexed: 01/03/2023]
9
Zhang H, Liu X, He X, Liu Y, Tan L. Experimental and density functional theory (DFT) studies on the interactions of Ru(II) polypyridyl complexes with the RAN triplex poly(U)˙poly(A)*poly(U). Metallomics 2015;6:2148-56. [PMID: 25313017 DOI: 10.1039/c4mt00175c] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
10
He X, Li J, Zhang H, Tan L. Effect of a Ru(II) polypyridyl complex [Ru(bpy)2(mdpz)]2+ on the stabilization of the RNA triplex poly(U)·poly(A)*poly(U). MOLECULAR BIOSYSTEMS 2015;10:2552-7. [PMID: 25010433 DOI: 10.1039/c4mb00304g] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
11
Li J, Sun Y, Xie L, He X, Tan L. Effect of ancillary ligands on the interaction of ruthenium(II) complexes with the triplex RNA poly(U)·poly(A)*poly(U). J Inorg Biochem 2014;143:56-63. [PMID: 25528478 DOI: 10.1016/j.jinorgbio.2014.12.007] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2014] [Revised: 12/03/2014] [Accepted: 12/03/2014] [Indexed: 01/01/2023]
12
He XJ, Tan LF. Interactions of octahedral ruthenium(II) polypyridyl complexes with the RNA triplex poly(U)•poly(A)*poly(U) effect on the third-strand stabilization. Inorg Chem 2014;53:11152-9. [PMID: 25272364 DOI: 10.1021/ic5017565] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
13
Bhowmik D, Buzzetti F, Fiorillo G, Lombardi P, Suresh Kumar G. Spectroscopic studies on the binding interaction of novel 13-phenylalkyl analogs of the natural alkaloid berberine to nucleic acid triplexes. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2013;120:257-264. [PMID: 24184628 DOI: 10.1016/j.saa.2013.09.081] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2013] [Revised: 09/13/2013] [Accepted: 09/25/2013] [Indexed: 06/02/2023]
14
Wei MT, Walter A, Gabrielian A, Schütz H, Birch-Hirschfeld E, Lin SB, Lin WC, Fritzsche H, Kan LS. Studies on the Extension of Sequence-independence and the Enhancement of DNA Triplex Formation. J CHIN CHEM SOC-TAIP 2013. [DOI: 10.1002/jccs.200500056] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
15
Bhowmik D, Kumar GS. Interaction of 9-O-(ω-amino) alkyl ether berberine analogs with poly(dT)·poly(dA)*poly(dT) triplex and poly(dA)·poly(dT) duplex: a comparative study. Mol Biol Rep 2013;40:5439-50. [PMID: 23666107 DOI: 10.1007/s11033-013-2642-z] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2012] [Accepted: 05/03/2013] [Indexed: 10/26/2022]
16
Lozano HJ, García B, Busto N, Leal JM. Interaction of Thionine with Triple-, Double-, and Single-Stranded RNAs. J Phys Chem B 2012. [DOI: 10.1021/jp307840c] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
17
Tan L, Xie L, Sun X, Zeng L, Yang G. Biophysical insights into the interaction of Ru(II) polypyridyl complexes with the RNA triplex poly(U)•poly(A)*poly(U). Intercalative ligand shape effect on third-strand stabilization. J Inorg Biochem 2012;120:32-8. [PMID: 23268790 DOI: 10.1016/j.jinorgbio.2012.11.009] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2012] [Revised: 11/28/2012] [Accepted: 11/29/2012] [Indexed: 01/14/2023]
18
Binding properties of Ru(II) polypyridyl complexes with poly(U)·poly(A)*poly(U) triplex: the ancillary ligand effect on third-strand stabilization. J Biol Inorg Chem 2012;18:71-80. [PMID: 23111627 DOI: 10.1007/s00775-012-0950-8] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2012] [Accepted: 10/13/2012] [Indexed: 10/27/2022]
19
Tan LF, Liu J, Shen JL, Liu XH, Zeng LL, Jin LH. First ruthenium(II) polypyridyl complex as a true molecular "light switch" for triplex RNA structure: [Ru(phen)2(mdpz)]2+ enhances the stability of Poly(U)·Poly(A)*Poly(U). Inorg Chem 2012;51:4417-9. [PMID: 22462534 DOI: 10.1021/ic300093h] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
20
Kaluzhny DN, Timoshin VV, Borisova OF, Zhurkin VB, Florentiev VL, Shchyolkina AK. Intramolecular recombination R-triplex in solution: stabilization by bis-intercalator YOYO. J Biomol Struct Dyn 2008;26:301-6. [PMID: 18808196 PMCID: PMC4807166 DOI: 10.1080/07391102.2008.10507245] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
21
Garcia B, Leal JM, Paiotta V, Ibeas S, Ruiz R, Secco F, Venturini M. Intercalation of ethidium into triple-strand poly(rA).2poly(rU): a thermodynamic and kinetic study. J Phys Chem B 2007;110:16131-8. [PMID: 16898771 DOI: 10.1021/jp0613283] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
22
Shchyolkina AK, Kaluzhny DN, Arndt-Jovin DJ, Jovin TM, Zhurkin VB. Recombination R-triplex: H-bonds contribution to stability as revealed with minor base substitutions for adenine. Nucleic Acids Res 2006;34:3239-45. [PMID: 16798913 PMCID: PMC1500870 DOI: 10.1093/nar/gkl431] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2006] [Revised: 05/29/2006] [Accepted: 05/31/2006] [Indexed: 01/29/2023]  Open
23
Shchyolkina AK, Kaluzhny DN, Borisova OF, Hawkins ME, Jernigan RL, Jovin TM, Arndt-Jovin DJ, Zhurkin VB. Formation of an intramolecular triple-stranded DNA structure monitored by fluorescence of 2-aminopurine or 6-methylisoxanthopterin. Nucleic Acids Res 2004;32:432-40. [PMID: 14739235 PMCID: PMC373315 DOI: 10.1093/nar/gkh158] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
24
Kato M, Hokabe S, Itakura S, Minoshima S, Lyubchenko YL, Gurkov TD, Okawara H, Nagayama K, Shimizu N. Interarm interaction of DNA cruciform forming at a short inverted repeat sequence. Biophys J 2003;85:402-8. [PMID: 12829494 PMCID: PMC1303095 DOI: 10.1016/s0006-3495(03)74484-1] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
25
Biro JC. Speculations about alternative DNA structures. Med Hypotheses 2003;61:86-97. [PMID: 12781648 DOI: 10.1016/s0306-9877(03)00123-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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