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For: Mubeen S, Bharadhwaj VS, Gadiya Y, Hofmann-Apitius M, Kodamullil AT, Domingo-Fernández D. DecoPath: a web application for decoding pathway enrichment analysis. NAR Genom Bioinform 2021;3:lqab087. [PMID: 34568823 PMCID: PMC8459727 DOI: 10.1093/nargab/lqab087] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2021] [Revised: 08/31/2021] [Accepted: 09/14/2021] [Indexed: 12/16/2022]  Open
Number Cited by Other Article(s)
1
Taub L, Hampton TH, Sarkar S, Doing G, Neff SL, Finger CE, Ferreira Fukutani K, Stanton BA. E.PathDash, pathway activation analysis of publicly available pathogen gene expression data. mSystems 2024;9:e0103024. [PMID: 39422483 PMCID: PMC11575265 DOI: 10.1128/msystems.01030-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2024] [Accepted: 09/20/2024] [Indexed: 10/19/2024]  Open
2
Pichol-Thievend C, Anezo O, Pettiwala AM, Bourmeau G, Montagne R, Lyne AM, Guichet PO, Deshors P, Ballestín A, Blanchard B, Reveilles J, Ravi VM, Joseph K, Heiland DH, Julien B, Leboucher S, Besse L, Legoix P, Dingli F, Liva S, Loew D, Giani E, Ribecco V, Furumaya C, Marcos-Kovandzic L, Masliantsev K, Daubon T, Wang L, Diaz AA, Schnell O, Beck J, Servant N, Karayan-Tapon L, Cavalli FMG, Seano G. VC-resist glioblastoma cell state: vessel co-option as a key driver of chemoradiation resistance. Nat Commun 2024;15:3602. [PMID: 38684700 PMCID: PMC11058782 DOI: 10.1038/s41467-024-47985-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Accepted: 04/17/2024] [Indexed: 05/02/2024]  Open
3
Mubeen S, Tom Kodamullil A, Hofmann-Apitius M, Domingo-Fernández D. On the influence of several factors on pathway enrichment analysis. Brief Bioinform 2022;23:bbac143. [PMID: 35453140 PMCID: PMC9116215 DOI: 10.1093/bib/bbac143] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2022] [Revised: 03/21/2022] [Accepted: 03/30/2022] [Indexed: 02/01/2023]  Open
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