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Liu R, Ma T, Li Y, Lei X, Ji H, Du H, Zhang J, Cao SK. Genomic Identification and Expression Analysis of Regulator of Chromosome Condensation 1-Domain Protein Family in Maize. Int J Mol Sci 2024; 25:11437. [PMID: 39518988 PMCID: PMC11547138 DOI: 10.3390/ijms252111437] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2024] [Revised: 10/16/2024] [Accepted: 10/21/2024] [Indexed: 11/16/2024] Open
Abstract
Abiotic stress affects the growth and development of maize (Zea mays). The regulator of chromosome condensation 1 (RCC1)-containing proteins (RCPs) plays crucial roles in plant growth and development and response to abiotic stresses. However, a comprehensive analysis of the maize RCP family has not been reported in detail. This study presents a systematic bioinformatics analysis of the ZmRCP family, identifying a total of 30 members distributed across nine chromosomes. The physicochemical properties and cis-acting elements in the promoters of ZmRCP members are predicted. The results of subcellular localization showed that ZmRCP3 and ZmRCP10 are targeted to mitochondria and ZmRCP2 is localized in the nucleus. A heatmap of expression levels among family members under abiotic stress conditions revealed varying degrees of induced expression, and the expression levels of 10 ZmRCP members were quantified using RT-qPCR under abiotic stress and plant hormone treatments. The results showed that ZmRCP members exhibit induced or inhibited responses to these abiotic stresses and plant hormones. These results contribute to a better understanding of the evolutionary history and potential role of the ZmRCP family in mediating responses to abiotic stress in maize.
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Affiliation(s)
- Rui Liu
- School of Life Science, Yangtze University, Jingzhou 434025, China; (R.L.); (T.M.); (Y.L.); (X.L.); (H.J.); (H.D.)
| | - Tian Ma
- School of Life Science, Yangtze University, Jingzhou 434025, China; (R.L.); (T.M.); (Y.L.); (X.L.); (H.J.); (H.D.)
| | - Yu Li
- School of Life Science, Yangtze University, Jingzhou 434025, China; (R.L.); (T.M.); (Y.L.); (X.L.); (H.J.); (H.D.)
| | - Xiongbiao Lei
- School of Life Science, Yangtze University, Jingzhou 434025, China; (R.L.); (T.M.); (Y.L.); (X.L.); (H.J.); (H.D.)
| | - Hongjing Ji
- School of Life Science, Yangtze University, Jingzhou 434025, China; (R.L.); (T.M.); (Y.L.); (X.L.); (H.J.); (H.D.)
| | - Hewei Du
- School of Life Science, Yangtze University, Jingzhou 434025, China; (R.L.); (T.M.); (Y.L.); (X.L.); (H.J.); (H.D.)
| | - Jianhua Zhang
- Department of Biology, Hong Kong Baptist University, Hong Kong, China
- State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China
| | - Shi-Kai Cao
- School of Life Science, Yangtze University, Jingzhou 434025, China; (R.L.); (T.M.); (Y.L.); (X.L.); (H.J.); (H.D.)
- State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China
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Xie Y, Wang M, Mo B, Liang C. Plant kinetochore complex: composition, function, and regulation. FRONTIERS IN PLANT SCIENCE 2024; 15:1467236. [PMID: 39464281 PMCID: PMC11503545 DOI: 10.3389/fpls.2024.1467236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2024] [Accepted: 09/25/2024] [Indexed: 10/29/2024]
Abstract
The kinetochore complex, an important protein assembly situated on the centromere, plays a pivotal role in chromosome segregation during cell division. Like in animals and fungi, the plant kinetochore complex is important for maintaining chromosome stability, regulating microtubule attachment, executing error correction mechanisms, and participating in signaling pathways to ensure accurate chromosome segregation. This review summarizes the composition, function, and regulation of the plant kinetochore complex, emphasizing the interactions of kinetochore proteins with centromeric DNAs (cenDNAs) and RNAs (cenRNAs). Additionally, the applications of the centromeric histone H3 variant (the core kinetochore protein CENH3, first identified as CENP-A in mammals) in the generation of ploidy-variable plants and synthesis of plant artificial chromosomes (PACs) are discussed. The review serves as a comprehensive roadmap for researchers delving into plant kinetochore exploration, highlighting the potential of kinetochore proteins in driving technological innovations in synthetic genomics and plant biotechnology.
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Affiliation(s)
- Yuqian Xie
- Guangdong Provincial Key Laboratory for Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, China
| | - Mingliang Wang
- Guangdong Provincial Key Laboratory for Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, China
| | - Beixin Mo
- Guangdong Provincial Key Laboratory for Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, China
- Synthetic Biology Research Center, Shenzhen University, Shenzhen, China
| | - Chao Liang
- Guangdong Provincial Key Laboratory for Plant Epigenetics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, China
- Synthetic Biology Research Center, Shenzhen University, Shenzhen, China
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Weiss JD, McVey SL, Stinebaugh SE, Sullivan CF, Dawe RK, Nannas NJ. Frequent Spindle Assembly Errors Require Structural Rearrangement to Complete Meiosis in Zea mays. Int J Mol Sci 2022; 23:ijms23084293. [PMID: 35457112 PMCID: PMC9031645 DOI: 10.3390/ijms23084293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Revised: 04/01/2022] [Accepted: 04/05/2022] [Indexed: 12/04/2022] Open
Abstract
The success of an organism is contingent upon its ability to faithfully pass on its genetic material. In the meiosis of many species, the process of chromosome segregation requires that bipolar spindles be formed without the aid of dedicated microtubule organizing centers, such as centrosomes. Here, we describe detailed analyses of acentrosomal spindle assembly and disassembly in time-lapse images, from live meiotic cells of Zea mays. Microtubules organized on the nuclear envelope with a perinuclear ring structure until nuclear envelope breakdown, at which point microtubules began bundling into a bipolar form. However, the process and timing of spindle assembly was highly variable, with frequent assembly errors in both meiosis I and II. Approximately 61% of cells formed incorrect spindle morphologies, with the most prevalent being tripolar spindles. The erroneous spindles were actively rearranged to bipolar through a coalescence of poles before proceeding to anaphase. Spindle disassembly occurred as a two-state process with a slow depolymerization, followed by a quick collapse. The results demonstrate that maize meiosis I and II spindle assembly is remarkably fluid in the early assembly stages, but otherwise proceeds through a predictable series of events.
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Affiliation(s)
- Jodi D. Weiss
- Department of Biology, Hamilton College, Clinton, NY 13323, USA; (J.D.W.); (S.L.M.); (S.E.S.); (C.F.S.)
| | - Shelby L. McVey
- Department of Biology, Hamilton College, Clinton, NY 13323, USA; (J.D.W.); (S.L.M.); (S.E.S.); (C.F.S.)
| | - Sarah E. Stinebaugh
- Department of Biology, Hamilton College, Clinton, NY 13323, USA; (J.D.W.); (S.L.M.); (S.E.S.); (C.F.S.)
| | - Caroline F. Sullivan
- Department of Biology, Hamilton College, Clinton, NY 13323, USA; (J.D.W.); (S.L.M.); (S.E.S.); (C.F.S.)
| | - R. Kelly Dawe
- Department of Genetics, University of Georgia, Athens, GA 30602, USA;
- Department of Plant Biology, University of Georgia, Athens, GA 30602, USA
| | - Natalie J. Nannas
- Department of Biology, Hamilton College, Clinton, NY 13323, USA; (J.D.W.); (S.L.M.); (S.E.S.); (C.F.S.)
- Correspondence:
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Thabet SG, Moursi YS, Karam MA, Börner A, Alqudah AM. Natural Variation Uncovers Candidate Genes for Barley Spikelet Number and Grain Yield under Drought Stress. Genes (Basel) 2020; 11:genes11050533. [PMID: 32403266 PMCID: PMC7290517 DOI: 10.3390/genes11050533] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2020] [Revised: 04/29/2020] [Accepted: 05/05/2020] [Indexed: 01/01/2023] Open
Abstract
Drought stress can occur at any growth stage and can affect crop productivity, which can result in large yield losses all over the world. In this respect, understanding the genetic architecture of agronomic traits under drought stress is essential for increasing crop yield potential and harvest. Barley is considered the most abiotic stress-tolerant cereal, particularly with respect to drought. In the present study, worldwide spring barley accessions were exposed to drought stress beginning from the early reproductive stage with 35% field capacity under field conditions. Drought stress had significantly reduced the agronomic and yield-related traits such as spike length, awn length, spikelet per spike, grains per spike and thousand kernel weight. To unravel the genetic factors underlying drought tolerance at the early reproductive stage, genome-wide association scan (GWAS) was performed using 121 spring barley accessions and a 9K single nucleotide polymorphisms (SNPs) chip. A total number of 101 significant SNPs, distributed over all seven barley chromosomes, were found to be highly associated with the studied traits, of which five genomic regions were associated with candidate genes at chromosomes 2 and 3. On chromosome 2H, the region between 6469300693-647258342 bp includes two candidate drought-specific genes (HORVU2Hr1G091030 and HORVU2Hr1G091170), which are highly associated with spikelet and final grain number per spike under drought stress conditions. Interestingly, the gene expression profile shows that the candidate genes were highly expressed in spikelet, grain, spike and leaf organs, demonstrating their pivotal role in drought tolerance. To the best of our knowledge, we reported the first detailed study that used GWAS with bioinformatic analyses to define the causative alleles and putative candidate genes underlying grain yield-related traits under field drought conditions in diverse barley germplasm. The identified alleles and candidate genes represent valuable resources for future functional characterization towards the enhancement of barley cultivars for drought tolerance.
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Affiliation(s)
- Samar G. Thabet
- Department of Botany, Faculty of Science, University of Fayoum, Fayoum 63514, Egypt; (S.G.T.); (Y.S.M.); (M.A.K.)
| | - Yasser S. Moursi
- Department of Botany, Faculty of Science, University of Fayoum, Fayoum 63514, Egypt; (S.G.T.); (Y.S.M.); (M.A.K.)
| | - Mohamed A. Karam
- Department of Botany, Faculty of Science, University of Fayoum, Fayoum 63514, Egypt; (S.G.T.); (Y.S.M.); (M.A.K.)
| | - Andreas Börner
- Research Group Resources Genetics and Reproduction, Department Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research, 06466 Seeland OT Gatersleben, Germany;
| | - Ahmad M. Alqudah
- Research Group Resources Genetics and Reproduction, Department Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research, 06466 Seeland OT Gatersleben, Germany;
- Correspondence: or
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