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Wang S, Dai X, Tang Q, Ding J, Shi H, Zhou W, Sheng S, Li P. Genome-wide identification of Morus notabilis Aquaporin gene family and differential expression of plasma membrane intrinsic proteins in response to Ralstonia pseudosolanacearum infection. BMC PLANT BIOLOGY 2025; 25:531. [PMID: 40281471 PMCID: PMC12023575 DOI: 10.1186/s12870-025-06541-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/14/2025] [Accepted: 04/11/2025] [Indexed: 04/29/2025]
Abstract
BACKGROUND Aquaporins (AQPs) play crucial roles in plant water transport, growth and development, and response to biotic and abiotic stresses. Despite their essential functions, the role of AQPs in mulberry trees (Morus L.) during Ralstonia pseudosolanacearum infection remains largely unknown. RESULTS In this study, we performed a genome-wide identification and comprehensive characterization of AQP genes in Morus notabilis. A total of 26 AQP genes were identified and classified into four subfamilies: NIP, PIP, SIP and TIP. Furthermore, detailed analyses were conducted on gene structures, protein physicochemical properties, transmembrane domains, phylogenetic relationships, and subcellular localization. Cis-acting element analysis showed that MnAQP genes were mainly involved in hormone, light and stress response. Tissue-specific expression analysis demonstrated that the PIP1 subfamily displayed significantly higher transcript abundance in root tissues relative to leaves, while the PIP2 subfamily maintained relatively stable expression patterns across various tissue types. In addition, following R. pseudosolanacearum inoculation, the expression levels of PIP genes were significantly upregulated in the roots, stems, and leaves of mulberry seedlings. These findings indicate that MnPIP genes play a crucial role in responding to R. pseudosolanacearum infection. CONCLUSIONS This study provides the comprehensive characterization of the AQP gene family in mulberry, clarifying the composition and diversity. Our findings establish a solid foundation for further understanding the function roles of MnPIPs following R. pseudosolanacearum infection in mulberry trees. CLINICAL TRIAL NUMBER Not applicable.
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Affiliation(s)
- Siyi Wang
- Jiangsu Key Laboratory of Sericultural Biology and Biotechnology, School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang, 212100, China
| | - Xue Dai
- Jiangsu Key Laboratory of Sericultural Biology and Biotechnology, School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang, 212100, China
| | - Qingqing Tang
- Jiangsu Key Laboratory of Sericultural Biology and Biotechnology, School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang, 212100, China
| | - Jianhao Ding
- Jiangsu Key Laboratory of Sericultural Biology and Biotechnology, School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang, 212100, China
| | - Huicong Shi
- Jiangsu Key Laboratory of Sericultural Biology and Biotechnology, School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang, 212100, China
| | - Weihong Zhou
- Jiangsu Key Laboratory of Sericultural Biology and Biotechnology, School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang, 212100, China
- Key Laboratory of Silkworm and Mulberry Genetic Improvement, Ministry of Agriculture and Rural Affairs, The Sericultural Research Institute, Chinese Academy of Agricultural Sciences, Zhenjiang, 212100, China
| | - Sheng Sheng
- Jiangsu Key Laboratory of Sericultural Biology and Biotechnology, School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang, 212100, China
- Key Laboratory of Silkworm and Mulberry Genetic Improvement, Ministry of Agriculture and Rural Affairs, The Sericultural Research Institute, Chinese Academy of Agricultural Sciences, Zhenjiang, 212100, China
| | - Ping Li
- Jiangsu Key Laboratory of Sericultural Biology and Biotechnology, School of Biotechnology, Jiangsu University of Science and Technology, Zhenjiang, 212100, China.
- Key Laboratory of Silkworm and Mulberry Genetic Improvement, Ministry of Agriculture and Rural Affairs, The Sericultural Research Institute, Chinese Academy of Agricultural Sciences, Zhenjiang, 212100, China.
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Ma J, Chen M, Wang Y, Li J, Tang J, Wu S, He C, Paul Chen J. A new scheme for boosting in situ Fenton-like reaction in plant pathogenic tissues for selective structural degradation of capsid proteins. J Nanobiotechnology 2025; 23:95. [PMID: 39923064 PMCID: PMC11806622 DOI: 10.1186/s12951-025-03151-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2024] [Accepted: 01/22/2025] [Indexed: 02/10/2025] Open
Abstract
Safe prevention and control of plant viruses is a global challenge. Inducing viral capsid protein (CP) degradation via hydroxyl radicals (∙OH) generated by an in situ Fenton-like reaction within plant pathogenic tissues is proposed for combating plant viruses in this study. We designed a new Fenton-like reaction inducer, tCuinter-bCDs, which utilizes an internal doping strategy that reduces copper content by 89.89% compared to conventional doping methods, while still achieving a high coexistence of multivalent copper ions. Our research demonstrated that tCuinter-bCDs possessed functional activity to specifically recognize and proximally degrade CP. tCuinter-bCDs form complexes with CP monomers through supramolecular bonds characterized by significant electrostatic components. Within 10 min, the complex induced complete degradation of tertiary structure pockets composed of α-helices and β-sheets located at residues MET1-GLU23, TYR73-ARG93, and SER147-PRO157. Based on a high-resolution 2.91 Å CP model that was constructed for the first time, this degradation process is likely driven by hydrophobic interactions between tCuinter-bCDs and CP residues MET1, VAL5, THR55, and THR58, along with hydrogen bonds formed with THR4, VAL5, GLY15, PRO57, and ALA59, thereby promoting degradation of adjacent peptide segments. This represents the first study demonstrating in situ Fenton-like reactions to combat pathogens in plant systems. Our findings provide a new, efficient, and environmentally friendly approach for plant virus control.
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Affiliation(s)
- Jun Ma
- Key Laboratory of Reservoir Aquatic Environment, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing, 400714, People's Republic of China
- Chongqing School, University of Chinese Academy of Sciences, Chongqing, 400714, People's Republic of China
| | - Ming Chen
- Key Laboratory of Reservoir Aquatic Environment, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing, 400714, People's Republic of China.
- Chongqing School, University of Chinese Academy of Sciences, Chongqing, 400714, People's Republic of China.
| | - Yujie Wang
- Key Laboratory of Reservoir Aquatic Environment, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing, 400714, People's Republic of China
- Chongqing School, University of Chinese Academy of Sciences, Chongqing, 400714, People's Republic of China
| | - Jiaying Li
- Institute of Quality Standard and Testing Technology, Yunnan Academy of Agriculture Sciences, Kunming, 650205, People's Republic of China
| | - Jian Tang
- Key Laboratory of Reservoir Aquatic Environment, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing, 400714, People's Republic of China
| | - Shengjun Wu
- Key Laboratory of Reservoir Aquatic Environment, Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences, Chongqing, 400714, People's Republic of China
- Chongqing School, University of Chinese Academy of Sciences, Chongqing, 400714, People's Republic of China
| | - Chi He
- State Key Laboratory of Multiphase Flow in Power Engineering, School of Energy and Power Engineering, Xi'an Jiaotong University, Xi'an, 710049, Shaanxi, People's Republic of China
| | - J Paul Chen
- Department of Civil and Environmental Engineering, National University of Singapore, 10 Kent Ridge, Singapore, 117576, Singapore.
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, 518060, People's Republic of China.
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Han Y, Luo F, Liang A, Xu D, Zhang H, Liu T, Qi H. Aquaporin CmPIP2;3 links H2O2 signal and antioxidation to modulate trehalose-induced cold tolerance in melon seedlings. PLANT PHYSIOLOGY 2024; 197:kiae477. [PMID: 39250755 DOI: 10.1093/plphys/kiae477] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2024] [Revised: 07/19/2024] [Accepted: 07/29/2024] [Indexed: 09/11/2024]
Abstract
Cold stress severely restricts the growth and development of cold-sensitive crops. Trehalose (Tre), known as the "sugar of life", plays key roles in regulating plant cold tolerance by triggering antioxidation. However, the relevant regulatory mechanism remains unclear. Here, we confirmed that Tre triggers apoplastic hydrogen peroxide (H2O2) production and thus plays key roles in improving the cold tolerance of melon (Cucumis melo var. makuwa Makino) seedlings. Moreover, Tre treatment can promote the transport of apoplastic H2O2 to the cytoplasm. This physiological process may depend on aquaporins. Further studies showed that a Tre-responsive plasma membrane intrinsic protein 2;3 (CmPIP2;3) had strong H2O2 transport function and that silencing CmPIP2;3 significantly weakened apoplastic H2O2 transport and reduced the cold tolerance of melon seedlings. Yeast library and protein-DNA interaction technology were then used to screen 2 Tre-responsive transcription factors, abscisic acid-responsive element (ABRE)-binding factor 2 (CmABF2) and ABRE-binding factor 3 (CmABF3), which can bind to the ABRE motif of the CmPIP2;3 promoter and activate its expression. Silencing of CmABF2 and CmABF3 further dramatically increased the ratio of apoplastic H2O2/cytoplasm H2O2 and reduced the cold tolerance of melon seedlings. This study uncovered that Tre treatment induces CmABF2/3 to positively regulate CmPIP2;3 expression. CmPIP2;3 subsequently enhances the cold tolerance of melon seedlings by promoting the transport of apoplastic H2O2 into the cytoplasm for conducting redox signals and stimulating downstream antioxidation.
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Affiliation(s)
- Yuqing Han
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Education of Ministry and Liaoning Province, National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology, Shenyang 110866, China
| | - Fei Luo
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Education of Ministry and Liaoning Province, National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology, Shenyang 110866, China
| | - Adan Liang
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Education of Ministry and Liaoning Province, National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology, Shenyang 110866, China
| | - Dongdong Xu
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Education of Ministry and Liaoning Province, National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology, Shenyang 110866, China
| | - Hongyi Zhang
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Education of Ministry and Liaoning Province, National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology, Shenyang 110866, China
| | - Tao Liu
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Education of Ministry and Liaoning Province, National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology, Shenyang 110866, China
| | - Hongyan Qi
- College of Horticulture, Shenyang Agricultural University, Shenyang 110866, China
- Key Laboratory of Protected Horticulture of Education of Ministry and Liaoning Province, National & Local Joint Engineering Research Center of Northern Horticultural Facilities Design & Application Technology, Shenyang 110866, China
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Zeng Q, Jia H, Ma Y, Xu L, Ming R, Yue J. Genome-Wide Identification and Expression Pattern Profiling of the Aquaporin Gene Family in Papaya ( Carica papaya L.). Int J Mol Sci 2023; 24:17276. [PMID: 38139107 PMCID: PMC10744249 DOI: 10.3390/ijms242417276] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Revised: 12/02/2023] [Accepted: 12/06/2023] [Indexed: 12/24/2023] Open
Abstract
Aquaporins (AQPs) are mainly responsible for the transportation of water and other small molecules such as CO2 and H2O2, and they perform diverse functions in plant growth, in development, and under stress conditions. They are also active participants in cell signal transduction in plants. However, little is known about AQP diversity, biological functions, and protein characteristics in papaya. To better understand the structure and function of CpAQPs in papaya, a total of 29 CpAQPs were identified and classified into five subfamilies. Analysis of gene structure and conserved motifs revealed that CpAQPs exhibited a degree of conservation, with some differentiation among subfamilies. The predicted interaction network showed that the PIP subfamily had the strongest protein interactions within the subfamily, while the SIP subfamily showed extensive interaction with members of the PIP, TIP, NIP, and XIP subfamilies. Furthermore, the analysis of CpAQPs' promoters revealed a large number of cis-elements participating in light, hormone, and stress responses. CpAQPs exhibited different expression patterns in various tissues and under different stress conditions. Collectively, these results provided a foundation for further functional investigations of CpAQPs in ripening, as well as leaf, flower, fruit, and seed development. They also shed light on the potential roles of CpAQP genes in response to environmental factors, offering valuable insights into their biological functions in papaya.
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Affiliation(s)
- Qiuxia Zeng
- Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Q.Z.); (H.J.); (Y.M.); (L.X.)
- College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Haifeng Jia
- Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Q.Z.); (H.J.); (Y.M.); (L.X.)
- College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Yaying Ma
- Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Q.Z.); (H.J.); (Y.M.); (L.X.)
- College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Liangwei Xu
- Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Q.Z.); (H.J.); (Y.M.); (L.X.)
- College of Life Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Ray Ming
- Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Q.Z.); (H.J.); (Y.M.); (L.X.)
| | - Jingjing Yue
- Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Q.Z.); (H.J.); (Y.M.); (L.X.)
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