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Zhao S, Sun Y, Su L, Yan L, Lin X, Long Y, Zhang A, Zhao Q. Significant Enrichment of Potential Pathogenic Fungi in Soil Mediated by Flavonoids, Phenolic Acids, and Organic Acids. J Fungi (Basel) 2025; 11:154. [PMID: 39997448 PMCID: PMC11856650 DOI: 10.3390/jof11020154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2025] [Revised: 02/10/2025] [Accepted: 02/11/2025] [Indexed: 02/26/2025] Open
Abstract
It is well established that root exudates play a crucial role in shaping the assembly of plant rhizosphere microbial communities. Nonetheless, our understanding of how different types of exudates influence the abundance of potential pathogens in soil remains insufficient. Investigating the effects of root exudates on soil-dwelling pathogenic fungi is imperative for a comprehensive understanding of plant-fungal interactions within soil ecosystems and for maintaining soil health. This study aimed to elucidate the effects of the principal components of root exudates-flavonoids (FLA), phenolic acids (PA), and organic acids (OA)-on soil microbial communities and soil properties, as well as to investigate their mechanisms of action on soil potential pathogenic fungi. The results demonstrated that the addition of these components significantly modified the composition and diversity of soil microbial communities, with OA treatment notably altering the composition of dominant microbial taxa. Furthermore, the introduction of these substances facilitated the proliferation of saprophytic fungi. Additionally, the incorporation of flavonoids, phenolic acids, and organic acids led to an increased abundance of potential pathogenic fungi in the soil, particularly in the FLA and PA treatments. It was observed that the addition of these substances enhanced soil fertility, pH, and antioxidant enzyme activity. Specifically, FLA and PA treatments reduced the abundance of dominant microbial taxa, whereas OA treatment altered the composition of these taxa. These findings suggest that the inclusion of flavonoids, phenolic acids, and organic acids could potentially augment the enrichment of soil potential pathogenic fungi by modulating soil properties and enzymatic activities. These results offer valuable insights into the interactions between plants and fungal communities in soil ecosystems and provide a scientific foundation for the management and maintenance of soil health.
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Affiliation(s)
- Shaoguan Zhao
- Spice and Beverage Research Institute, Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Genetic Resources Utilization of Aromatic Beverage Crops, Ministry of Agriculture and Rural Affairs/Hainan Key Laboratory of Genetic Improvement and Quality Control of Tropical Sweet and Spicy Beverage Crops, Wanning 571533, China; (S.Z.)
| | - Yan Sun
- Spice and Beverage Research Institute, Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Genetic Resources Utilization of Aromatic Beverage Crops, Ministry of Agriculture and Rural Affairs/Hainan Key Laboratory of Genetic Improvement and Quality Control of Tropical Sweet and Spicy Beverage Crops, Wanning 571533, China; (S.Z.)
| | - Lanxi Su
- Spice and Beverage Research Institute, Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Genetic Resources Utilization of Aromatic Beverage Crops, Ministry of Agriculture and Rural Affairs/Hainan Key Laboratory of Genetic Improvement and Quality Control of Tropical Sweet and Spicy Beverage Crops, Wanning 571533, China; (S.Z.)
| | - Lin Yan
- Spice and Beverage Research Institute, Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Genetic Resources Utilization of Aromatic Beverage Crops, Ministry of Agriculture and Rural Affairs/Hainan Key Laboratory of Genetic Improvement and Quality Control of Tropical Sweet and Spicy Beverage Crops, Wanning 571533, China; (S.Z.)
| | - Xingjun Lin
- Spice and Beverage Research Institute, Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Genetic Resources Utilization of Aromatic Beverage Crops, Ministry of Agriculture and Rural Affairs/Hainan Key Laboratory of Genetic Improvement and Quality Control of Tropical Sweet and Spicy Beverage Crops, Wanning 571533, China; (S.Z.)
| | - Yuzhou Long
- Spice and Beverage Research Institute, Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Genetic Resources Utilization of Aromatic Beverage Crops, Ministry of Agriculture and Rural Affairs/Hainan Key Laboratory of Genetic Improvement and Quality Control of Tropical Sweet and Spicy Beverage Crops, Wanning 571533, China; (S.Z.)
- Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya 572025, China
| | - Ang Zhang
- Spice and Beverage Research Institute, Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Genetic Resources Utilization of Aromatic Beverage Crops, Ministry of Agriculture and Rural Affairs/Hainan Key Laboratory of Genetic Improvement and Quality Control of Tropical Sweet and Spicy Beverage Crops, Wanning 571533, China; (S.Z.)
| | - Qingyun Zhao
- Spice and Beverage Research Institute, Chinese Academy of Tropical Agricultural Sciences/Key Laboratory of Genetic Resources Utilization of Aromatic Beverage Crops, Ministry of Agriculture and Rural Affairs/Hainan Key Laboratory of Genetic Improvement and Quality Control of Tropical Sweet and Spicy Beverage Crops, Wanning 571533, China; (S.Z.)
- Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya 572025, China
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Wang Y, Xu B, Fang L, Jiang Z, Zeng W, Tang X, Liu L, Liu P, Jia B. High-Quality Genome Resource of Gilbertella persicaria Causing Peach Soft Rot. PLANT DISEASE 2023; 107:908-910. [PMID: 36265153 DOI: 10.1094/pdis-04-22-0897-a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Peach soft rot caused by Gilbertella persicaria is an economically important disease. Here, we report a high-quality complete and annotated genome sequence of G. persicaria strain TFLB-J, isolated from peach fruit in Yuanyang county of Henan Province, China. The assembly consists of 91 scaffolds with an estimated genome size of 33.59 Mb and N50 length of 0.92 Mb, encoding 13,296 predicted protein-coding genes. The whole-genome sequence could provide gene resources for further study of pathogenic effectors and comparative genomics of peach soft rot pathogens.
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Affiliation(s)
- Youyu Wang
- Anhui Engineering Laboratory for Horticultural Crop Breeding, College of Horticulture, Anhui Agricultural University, Hefei, China
| | - Bo Xu
- Anhui Engineering Laboratory for Horticultural Crop Breeding, College of Horticulture, Anhui Agricultural University, Hefei, China
| | - Lemin Fang
- Anhui Engineering Laboratory for Horticultural Crop Breeding, College of Horticulture, Anhui Agricultural University, Hefei, China
| | - Zhenghua Jiang
- Anhui Engineering Laboratory for Horticultural Crop Breeding, College of Horticulture, Anhui Agricultural University, Hefei, China
| | - Wenfang Zeng
- Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences/National Peach & Grape Improvement Center, Zhengzhou 450009, Henan, China
| | - Xiaomei Tang
- Anhui Engineering Laboratory for Horticultural Crop Breeding, College of Horticulture, Anhui Agricultural University, Hefei, China
| | - Lun Liu
- Anhui Engineering Laboratory for Horticultural Crop Breeding, College of Horticulture, Anhui Agricultural University, Hefei, China
| | - Pu Liu
- Anhui Engineering Laboratory for Horticultural Crop Breeding, College of Horticulture, Anhui Agricultural University, Hefei, China
| | - Bing Jia
- Anhui Engineering Laboratory for Horticultural Crop Breeding, College of Horticulture, Anhui Agricultural University, Hefei, China
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Matrose NA, Obikeze K, Belay ZA, Caleb OJ. Plant extracts and other natural compounds as alternatives for post-harvest management of fruit fungal pathogens: A review. FOOD BIOSCI 2021. [DOI: 10.1016/j.fbio.2020.100840] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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Cheng Y, Lin Y, Cao H, Li Z. Citrus Postharvest Green Mold: Recent Advances in Fungal Pathogenicity and Fruit Resistance. Microorganisms 2020; 8:E449. [PMID: 32209982 PMCID: PMC7143998 DOI: 10.3390/microorganisms8030449] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2020] [Revised: 03/10/2020] [Accepted: 03/21/2020] [Indexed: 01/04/2023] Open
Abstract
As the major postharvest disease of citrus fruit, postharvest green mold is caused by the necrotrophic fungus Penicillium digitatum (Pd), which leads to huge economic losses worldwide. Fungicides are still the main method currently used to control postharvest green mold in citrus fruit storage. Investigating molecular mechanisms of plant-pathogen interactions, including pathogenicity and plant resistance, is crucial for developing novel and safer strategies for effectively controlling plant diseases. Despite fruit-pathogen interactions remaining relatively unexplored compared with well-studied leaf-pathogen interactions, progress has occurred in the citrus fruit-Pd interaction in recent years, mainly due to their genome sequencing and establishment or optimization of their genetic transformation systems. Recent advances in Pd pathogenicity on citrus fruit and fruit resistance against Pd infection are summarized in this review.
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Affiliation(s)
- Yulin Cheng
- Key Laboratory of Plant Hormones and Development Regulation of Chongqing, School of Life Sciences, Chongqing University, Chongqing 401331, China (H.C.)
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing 401331, China
| | - Yunlong Lin
- Key Laboratory of Plant Hormones and Development Regulation of Chongqing, School of Life Sciences, Chongqing University, Chongqing 401331, China (H.C.)
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing 401331, China
| | - Haohao Cao
- Key Laboratory of Plant Hormones and Development Regulation of Chongqing, School of Life Sciences, Chongqing University, Chongqing 401331, China (H.C.)
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing 401331, China
| | - Zhengguo Li
- Key Laboratory of Plant Hormones and Development Regulation of Chongqing, School of Life Sciences, Chongqing University, Chongqing 401331, China (H.C.)
- Center of Plant Functional Genomics, Institute of Advanced Interdisciplinary Studies, Chongqing University, Chongqing 401331, China
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