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Yan C, Hao H, Wang Z, Sha S, Zhang Y, Wang Q, Kang Z, Huang L, Wang L, Feng H. Prediction of Suitable Habitat Distribution of Cryptosphaeria pullmanensis in the World and China under Climate Change. J Fungi (Basel) 2023; 9:739. [PMID: 37504728 PMCID: PMC10381404 DOI: 10.3390/jof9070739] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Revised: 07/04/2023] [Accepted: 07/07/2023] [Indexed: 07/29/2023] Open
Abstract
Years of outbreaks of woody canker (Cryptosphaeria pullmanensis) in the United States, Iran, and China have resulted in massive economic losses to biological forests and fruit trees. However, only limited information is available on their distribution, and their habitat requirements have not been well evaluated due to a lack of research. In recent years, scientists have utilized the MaxEnt model to estimate the effect of global temperature and specific environmental conditions on species distribution. Using occurrence and high resolution ecological data, we predicted the spatiotemporal distribution of C. pullmanensis under twelve climate change scenarios by applying the MaxEnt model. We identified climatic factors, geography, soil, and land cover that shape their distribution range and determined shifts in their habitat range. Then, we measured the suitable habitat area, the ratio of change in the area of suitable habitat, the expansion and shrinkage of maps under climate change, the direction and distance of range changes from the present to the end of the twenty-first century, and the effect of environmental variables. C. pullmanensis is mostly widespread in high-suitability regions in northwestern China, the majority of Iran, Afghanistan, and Turkey, northern Chile, southwestern Argentina, and the west coast of California in the United States. Under future climatic conditions, climate changes of varied intensities favored the expansion of suitable habitats for C. pullmanensis in China. However, appropriate land areas are diminishing globally. The trend in migration is toward latitudes and elevations that are higher. The estimated area of possible suitability shifted eastward in China. The results of the present study are valuable not only for countries such as Morocco, Spain, Chile, Turkey, Kazakhstan, etc., where the infection has not yet fully spread or been established, but also for nations where the species has been discovered. Authorities should take steps to reduce greenhouse gas emissions in order to restrict the spread of C. pullmanensis. Countries with highly appropriate locations should increase their surveillance, risk assessment, and response capabilities.
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Affiliation(s)
- Chengcai Yan
- Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar 843300, China
- Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture, College of Agronomy, Tarim University, Alar 843300, China
- The National and Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology of Characteristic Fruit Trees in Southern Xinjiang, Alar 843300, China
| | - Haiting Hao
- Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar 843300, China
- Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture, College of Agronomy, Tarim University, Alar 843300, China
- The National and Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology of Characteristic Fruit Trees in Southern Xinjiang, Alar 843300, China
| | - Zhe Wang
- Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar 843300, China
- Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture, College of Agronomy, Tarim University, Alar 843300, China
- The National and Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology of Characteristic Fruit Trees in Southern Xinjiang, Alar 843300, China
| | - Shuaishuai Sha
- Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar 843300, China
- Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture, College of Agronomy, Tarim University, Alar 843300, China
- The National and Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology of Characteristic Fruit Trees in Southern Xinjiang, Alar 843300, China
| | - Yiwen Zhang
- Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar 843300, China
- Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture, College of Agronomy, Tarim University, Alar 843300, China
- The National and Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology of Characteristic Fruit Trees in Southern Xinjiang, Alar 843300, China
| | - Qingpeng Wang
- Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar 843300, China
- Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture, College of Agronomy, Tarim University, Alar 843300, China
| | - Zhensheng Kang
- Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar 843300, China
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling 712100, China
- Yangling Seed Industry Innovation Center, Northwest A&F University, Yangling 712100, China
| | - Lili Huang
- Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar 843300, China
- State Key Laboratory of Crop Stress Biology for Arid Areas, Northwest A&F University, Yangling 712100, China
- Yangling Seed Industry Innovation Center, Northwest A&F University, Yangling 712100, China
| | - Lan Wang
- Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar 843300, China
- Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture, College of Agronomy, Tarim University, Alar 843300, China
- The National and Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology of Characteristic Fruit Trees in Southern Xinjiang, Alar 843300, China
| | - Hongzu Feng
- Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang, College of Agronomy, Tarim University, Alar 843300, China
- Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture, College of Agronomy, Tarim University, Alar 843300, China
- The National and Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology of Characteristic Fruit Trees in Southern Xinjiang, Alar 843300, China
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Yan C, Hao H, Feng H, Wang Z, Sha S, Li M, Wang L, Kang Z. Whole genome sequence of Cryptosphaeria pullmanensis, an important pathogenic fungus potentially threatening crop and forestry production. Genomics 2023; 115:110576. [PMID: 36758876 DOI: 10.1016/j.ygeno.2023.110576] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2022] [Revised: 02/02/2023] [Accepted: 02/05/2023] [Indexed: 02/10/2023]
Abstract
Many fungal members of the Diatrypaceae family are pathogenic towards plants and are widely distributed globally. Cryptosphaeria pullmanensis is a pathogenic fungus that infects populus and walnut trees, causing their death. We sequenced the genome of C. pullmanensis based on a combination of Nanopore PromethION and Illumina NovaSeq PE150 platforms, and functionally annotated the sequences using a number of open-access databases. This is the first report of the genome-scale assembly and annotation for C. pullmanensis, the first species of the genus Cryptosphaeria to be sequenced. We obtained 13 contigs with an N50 contig size of 7,095,780 bp, a GC content ratio of 43.23% and a genome size of 56.72 Mb with 10,474 putative coding genes. Comparative genomic analysis against the genomes of seven Ascomycetes fungal strains was performed. Among the seven species tested, the Eutypa lata genome displayed the highest similarity to the C. pullmanensis genome in terms of collinearity and homologous gene content. This study has provided a genetic resource that offers extensive information and a framework for future investigations into the transcriptome, proteome, and metabonome of C. pullmanensis to understand its molecular pathogenesis.
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Affiliation(s)
- Chengcai Yan
- Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang/ Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture/ The National and Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology of Characteristic Fruit Trees in Southern Xinjiang, College of Agronomy, Tarim University, Alar, Xinjiang 843300, China
| | - Haiting Hao
- Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang/ Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture/ The National and Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology of Characteristic Fruit Trees in Southern Xinjiang, College of Agronomy, Tarim University, Alar, Xinjiang 843300, China
| | - Hongzu Feng
- Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang/ Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture/ The National and Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology of Characteristic Fruit Trees in Southern Xinjiang, College of Agronomy, Tarim University, Alar, Xinjiang 843300, China
| | - Zhe Wang
- Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang/ Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture/ The National and Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology of Characteristic Fruit Trees in Southern Xinjiang, College of Agronomy, Tarim University, Alar, Xinjiang 843300, China
| | - Shuaishuai Sha
- Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang/ Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture/ The National and Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology of Characteristic Fruit Trees in Southern Xinjiang, College of Agronomy, Tarim University, Alar, Xinjiang 843300, China
| | - Meng Li
- Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang/ Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture/ The National and Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology of Characteristic Fruit Trees in Southern Xinjiang, College of Agronomy, Tarim University, Alar, Xinjiang 843300, China
| | - Lan Wang
- Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang/ Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture/ The National and Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology of Characteristic Fruit Trees in Southern Xinjiang, College of Agronomy, Tarim University, Alar, Xinjiang 843300, China.
| | - Zhensheng Kang
- Key Laboratory of Integrated Pest Management (IPM) of Xinjiang Production and Construction Corps in Southern Xinjiang/ Scientific Observing and Experimental Station of Crop Pests in Alar, Ministry of Agriculture/ The National and Local Joint Engineering Laboratory of High Efficiency and Superior-Quality Cultivation and Fruit Deep Processing Technology of Characteristic Fruit Trees in Southern Xinjiang, College of Agronomy, Tarim University, Alar, Xinjiang 843300, China; State Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest A&F University, Yangling, Shaanxi 712100, China, Tarim University, Xinjiang, China.
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Lawrence DP, Peduto Hand F, Gubler WD, Trouillas FP. Botryosphaeriaceae species associated with dieback and canker disease of bay laurel in northern California with the description of Dothiorella californica sp. nov. Fungal Biol 2016; 121:347-360. [PMID: 28317539 DOI: 10.1016/j.funbio.2016.09.005] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2016] [Revised: 09/13/2016] [Accepted: 09/16/2016] [Indexed: 10/21/2022]
Abstract
Members of the Botryosphaeriaceae are cosmopolitan fungi that may exist as seemingly innocuous endophytes or as destructive pathogens of numerous woody hosts, including fruit and nut crops, urban ornamental trees and shrubs, and forest trees. Surveys of bay laurel in northern California have revealed symptoms of dieback and branch canker of unknown aetiology. The goals of this study were to identify and clarify the species of Botryosphaeriaceae associated with these symptoms and to confirm their pathogenicity. To understand the role of members of the Botryosphaeriaceae in the dieback and canker disease of bay laurel, 23 isolates were isolated from symptomatic wood. Phylogenetic analyses of ITS, translation elongation factor 1-α, and beta-tubulin revealed three species: Botryosphaeria dothidea, Neofusicoccum nonquaesitum, and the newly described and typified species Dothiorella californica sp. nov. When select isolates were inoculated to 2- to 3-year-old branches of Umbellularia californica in a natural forest, both B. dothidea and N. nonquaesitum were pathogenic with N. nonquaesitum producing the largest lesions at 12- and 18-months post inoculation, respectively, while Do. californica did not cause wood lesions significantly greater than the mock-inoculated controls. This study represents the first attempt to identify and test the pathogenicity of Botryosphaeriaceae species associated with dieback and canker disease of bay laurel in a northern California forest.
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Affiliation(s)
- Daniel P Lawrence
- Department of Plant Pathology, University of California, One Shields Avenue, Davis, CA 95616, USA
| | - Francesca Peduto Hand
- Department of Plant Pathology, The Ohio State University, 2021 Coffey Road, Columbus, OH 43210, USA
| | - W Douglas Gubler
- Department of Plant Pathology, University of California, One Shields Avenue, Davis, CA 95616, USA
| | - Florent P Trouillas
- Department of Plant Pathology, University of California, One Shields Avenue, Davis, CA 95616, USA.
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