A Real-Time PCR Assay for Early Detection of Eastern Filbert Blight

Pest categorisation of Anisogramma anomala

Following a request from the European Commission, the EFSA Plant Health (PLH) Panel performed a pest categorisation of Anisogramma anomala, a well-defined and distinguishable fungal species of the family Valsaceae. The pathogen is regulated in Annex IIAI of Council Directive 2000/29/EC as a harmful organism whose introduction into the EU is banned on plants of Corylus L., intended for planting, other than seeds, originating in Canada and the USA. The fungus is native to eastern North America and causes eastern filbert blight on cultivated hazel, Corylus avellana, as well as on wild hazel (Corylus spp.). In the 1960s, the disease spread on infected plant material to Oregon, where it then threatened US hazelnut production in the Willamette Valley. The pest could enter the EU via plants for planting. Hosts and favourable climatic conditions are common in the EU, thus facilitating establishment. The pest would be able to spread following establishment through infected plants for planting and ascospore dispersal. A. anomala leads to canopy and yield loss and can cause death of Corylus trees. Should the pathogen be introduced into the EU, impacts can be expected not just on hazel as a crop and as an ornamental but also in coppices and woodlands, where Corylus species provide an important habitat. In Oregon, scouting for cankers, therapeutic pruning and copious fungicide applications are reported to be necessary (but costly measures) to continue hazelnut production in the presence of the disease. Breeding for resistance led to the selection of resistant cultivars. The main knowledge gaps concern (i) the role of deadwood and cut branches as potential entry pathways and means of spread and (ii) the susceptibility of C. avellana cultivars and of Corylus spp. in the wild in the EU. The criteria assessed by the Panel for consideration as a potential quarantine pest are met. For regulated non-quarantine pests, the criterion on the pest presence in the EU is not met.

Evaluation of a Multilocus Indel DNA Region for the Detection of the Wheat Tan Spot Pathogen Pyrenophora tritici-repentis

Tan spot or yellow (leaf) spot disease of wheat (Triticum spp.) is caused by Pyrenophora tritici-repentis, a necrotrophic fungal pathogen that is widespread throughout the main wheat-growing regions in the world. This disease is currently the single most economically important crop disease in Australia. In this study, a real-time quantitative polymerase chain reaction (qPCR) assay was developed as a diagnostic tool to detect the pathogen on wheat foliar tissue. A multicopy locus (PtrMulti) present in the P. tritici-repentis genome was assessed for its suitability as a qPCR probe. The primer pair PtrMulti_F/R that targets the region was evaluated with respect to species specificity and sensitivity. A PtrMulti SYBR qPCR assay was developed and proved to be suitable for the identification and relative quantification of P. tritici-repentis with a detection limit of DNA levels at <0.1 pg. Variation of the PtrMulti copy number between the geographical representatives of P. tritici-repentis strains examined was minimal, with the range of 63 to 85 copies per genome. For naturally infected wheat field samples, the incidence of P. tritici-repentis DNA on leaves quantified by qPCR varied up to 1,000-fold difference in the concentration, with a higher incidence of DNA occurring on the lower canopy for most of the growth stages examined. At the early growth stages, qPCR assay was able to detect P. tritici-repentis DNA on the younger leaves in the absence of visible tan spot lesions. These results demonstrate the potential of PtrMulti probe to be used for early detection and rapid screening of tan spot disease on wheat plants.

Powerful qPCR assays for the early detection of latent invaders: interdisciplinary approaches in clinical cancer research and plant pathology

Latent invaders represent the first step of disease before symptoms occur in the host. Based on recent findings, tumors are considered to be ecosystems in which cancer cells act as invasive species that interact with the native host cell species. Analogously, in plants latent fungal pathogens coevolve within symptomless host tissues. For these reasons, similar detection approaches can be used for an early diagnosis of the invasion process in both plants and humans to prevent or reduce the spread of the disease. Molecular tools based on the evaluation of nucleic acids have been developed for the specific, rapid, and early detection of human diseases. During the last decades, these techniques to assess and quantify the proliferation of latent invaders in host cells have been transferred from the medical field to different areas of scientific research, such as plant pathology. An improvement in molecular biology protocols (especially referring to qPCR assays) specifically designed and optimized for detection in host plants is therefore advisable. This work is a cross-disciplinary review discussing the use of a methodological approach that is employed within both medical and plant sciences. It provides an overview of the principal qPCR tools for the detection of latent invaders, focusing on comparisons between clinical cancer research and plant pathology, and recent advances in the early detection of latent invaders to improve prevention and control strategies.