Assessment of Resistance of Tubers of Potato Cultivars to Phytophthora erythroseptica and Pythium ultimum

Transcriptional regulation of wound suberin deposition in potato cultivars with differential wound healing capacity

Wounding during mechanical harvesting and post-harvest handling results in tuber desiccation and provides an entry point for pathogens resulting in substantial post​-harvest crop losses. Poor wound healing is a major culprit of these losses. Wound tissue in potato (Solanum tuberosum) tubers, and all higher plants, is composed of a large proportion of suberin that is deposited in a specialized tissue called the wound periderm. However, the genetic regulatory pathway controlling wound-induced suberization remains unknown. Here, we implicate two potato transcription factors, StMYB102 (PGSC0003DMG400011250) and StMYB74 (PGSC0003DMG400022399), as regulators of wound suberin biosynthesis and deposition. Using targeted metabolomics and transcript profiling from the wound healing tissues of two commercial potato cultivars, as well as heterologous expression, we provide evidence for the molecular-genetic basis of the differential wound suberization capacities of different potato cultivars. Our results suggest that (i) the export of suberin from the cytosol to the apoplast and ligno-suberin deposition may be limiting factors for wound suberization, (ii) StMYB74 and StMYB102 are important regulators of the wound suberization process in tubers, and (iii) polymorphisms in StMYB102 may influence cultivar-specific wound suberization capacity. These results represent an important step in understanding the regulated biosynthesis and deposition of wound suberin and provide a practical foundation for targeted breeding approaches aimed at improving potato tuber storage life.

Feasibility of Volatile Biomarker-Based Detection of Pythium Leak in Postharvest Stored Potato Tubers Using Field Asymmetric Ion Mobility Spectrometry

The study evaluates the suitability of a field asymmetric ion mobility spectrometry (FAIMS) system for early detection of the Pythium leak disease in potato tubers simulating bulk storage conditions. Tubers of Ranger Russet (RR) and Russet Burbank (RB) cultivars were inoculated with Pythium ultimum, the causal agent of Pythium leak (with negative control samples as well) and placed in glass jars. The headspace in sampling jars was scanned using the FAIMS system at regular intervals (in days up to 14 and 31 days for the tubers stored at 25 °C and 4 °C, respectively) to acquire ion mobility current profiles representing the volatile organic compounds (VOCs). Principal component analysis plots revealed that VOCs ion peak profiles specific to Pythium ultimum were detected for the cultivars as early as one day after inoculation (DAI) at room temperature storage condition, while delayed detection was observed for tubers stored at 4 °C (RR: 5th DAI and RB: 10th DAI), possibly due to a slower disease progression at a lower temperature. There was also some overlap between control and inoculated samples at a lower temperature, which could be because of the limited volatile release. Additionally, data suggested that the RB cultivar might be less susceptible to Pythium ultimum under reduced temperature storage conditions. Disease symptom-specific critical compensation voltage (CV) and dispersion field (DF) from FAIMS responses were in the ranges of −0.58 to −2.97 V and 30–84% for the tubers stored at room temperature, and −0.31 to −2.97 V and 28–90% for reduced temperature, respectively. The ion current intensities at −1.31 V CV and 74% DF showed distinctive temporal progression associated with healthy control and infected tuber samples.

Beta Regression Model for Predicting the Development of Pink Rot in Potato Tubers During Storage

Pink rot is an important disease of potato with worldwide distribution. Severe yield and quality losses have been reported at harvest and in postharvest storage. Under conditions favoring disease development, pink rot severity can continue to increase from the field to storage and from storage to transit, causing further losses. Prediction of pink rot disease development in storage has great potential for growers to intervene at an earlier stage of disease development to minimize economic losses. Pink rot disease is estimated as percent rot confined on the interval (0 or 1, corresponding to 0% as no disease and 100% as maximum disease). In this study, beta regression is considered over the traditional ordinary least squares regression (linear regression) for fitting continuous response variables bounded on the unit interval (0,1). This method is considered a good alternative to data transformation and analysis by linear regression. The percentages of incidence of pink rot in tubers at harvest, yield, and days after harvest were used as study covariates to predict pink rot development from 32 to 78 days postharvest. Results demonstrate that the interaction between percentage of pink rot at harvest and yield is a significant predictor (P < 0.0001) of the beta regression model. A linear regression model was also designed to compare the results with the proposed beta regression model. Linear predictors observed in diagnostic plots with linear regression model was found to not be constant and an adjusted R² (0.49) was obtained. The pseudo R² (0.56) and constant variance for this study suggests that the beta regression function is adequate for predicting the development of pink rot during storage. The use of the beta prediction model could help growers decide whether to apply a fungicide to tubers going into storage or to market their crop before significant storage losses are incurred.

Tuber Rot of Potato Caused by Phytophthora nicotianae: Isolate Aggressiveness and Cultivar Susceptibility

A study was undertaken in 2008 and 2009 to examine potato (Solanum tuberosum) cultivar susceptibility, the potential of other host species to act as sources of inoculum for potato infections, and other aspects of potato-Phytophthora nicotianae interactions. Twelve isolates of P. nicotianae collected from five leaf, one petiole, and six tuber infections of potato from five states, as well as isolates from a variety of other host species, were evaluated for ability to cause tuber rot of potato via inoculation studies. Additionally, the susceptibility of 27 potato cultivars commonly grown in the United States to tuber infection by P. nicotianae was determined. Eighty-three percent of the isolates recovered from potato were highly aggressive, infecting tubers at nearly four times greater incidences than isolates originating from nonpotato hosts. With the exception of two tobacco isolates, zoospores of all isolates recovered from nonpotato hosts were able to infect potato tubers. Russet cultivars were significantly less susceptible to P. nicotianae than red and white cultivars in 2008, and red cultivars in 2009. Umatilla Russet was the most resistant cultivar in both years, whereas Red Norland and Dakota Rose were the most susceptible in both years. Results of a survey for P. nicotianae conducted in four states from 2008 through 2010 confirmed previous observations of naturally occurring infections of potato in Missouri, Nebraska, and Texas, as well as infections of potato in Michigan (documented for the first time). All isolates recovered in the survey were sensitive to mefenoxam (EC₅₀ < 1.0 μg/ml).

Effect of Application Method and Rate on Residual Efficacy of Mefenoxam and Phosphorous Acid Fungicides in the Control of Pink Rot of Potato

Experiments were conducted to examine the effectiveness of rate and method of phosphorous acid application for controlling pink rot of potato (Solanum tuberosum) caused by Phytophthora erythroseptica. Replicated small-plot and replicated split commercial field trials were established in commercial production fields in Minnesota from 2006 to 2009. Fungicides were applied in-furrow at planting, or as one, two, or three foliar applications via ground sprayer, irrigation system (chemigation), or fixed-wing aircraft. Phosphorous acid efficacy was compared to mefenoxam, the fungicide commonly utilized to manage pink rot, either by determining natural infections in the field or by inoculating eyes of harvested tubers using a mefenoxam-sensitive and -resistant isolate of P. erythroseptica via postharvest challenge inoculation. In replicated small plot trials, both in-furrow and two foliar applications of mefenoxam controlled tuber rot in the field, and significantly controlled tuber rot in storage. Phosphorous acid also reduced tuber rot in the field when applied two or three times to the foliage. Although phosphorous acid was ineffective when applied in-furrow, one, two, and three foliar applications and a postharvest application of phosphorous acid controlled mefenoxam-sensitive and -resistant isolates of P. erythroseptica during storage for 187 days, while mefenoxam failed to control the resistant isolate. In replicated split commercial field trials, two aerial applications of phosphorous acid were as effective as three applications in reducing pink rot incidence in tubers inoculated postharvest. Three aerial applications were as effective as three chemigation applications in replicated split commercial field trials in 2008, but provided significantly greater protection than chemigation in 2009.

Competitive Parasitic Fitness of Mefenoxam-Sensitive and -Resistant Isolates of Phytophthora erythroseptica under Fungicide Selection Pressure

A 2-year field and laboratory experiment was initiated to study the competitive parasitic fitness of mefenoxam-resistant (50% effective concentration [EC₅₀] > 100 μg ml^-1) and mefenoxam-sensitive (EC₅₀ = 0.07 μg ml^-1) isolates of Phytophthora erythroseptica with equal aggressiveness. The competitive ability of the mefenoxam-resistant and -sensitive isolates was tested under no selection pressure (nonfungicide treated) as well as under the influence of mefenoxam and non-mefenoxam (phosphorous acid) fungicides. P. erythroseptica isolates were combined in four ratios of mefenoxam-resistant (R) to mefenoxam-susceptible (S) (0R:0S, 1R:1S, 3R:1S, and 1R:3S) and subsequently infested into the soil at the time of planting. In-furrow mefenoxam applications were applied to the soil immediately following infestation with P. erythroseptica. Phosphorous acid was applied at tuber initiation and 14 days after tuber initiation. Noninfested, nonfungicide-treated plots served as controls. P. erythroseptica isolates recovered from field-infected pink rot tubers at harvest and 3 to 4 weeks after harvest were tested for mefenoxam sensitivity in vitro. In vivo studies were performed by challenge inoculating a zoospore suspension in the four ratios described above onto potato tubers harvested from nontreated, phosphorous acid-treated, or mefenoxam-treated field plots. These field plots were not infested with P. erythroseptica at planting. Results from both field and in vivo studies demonstrate that mefenoxam-resistant isolates of P. erythroseptica are as fit as sensitive isolates in the absence of selection pressure or in the presence of a phosphorous acid fungicide treatment. Under mefenoxam selection pressure, mefenoxam-resistant P. erythroseptica isolates were more parasitically fit than -sensitive isolates. These studies suggest the lack of an apparent fitness penalty in mefenoxam-resistant P. erythroseptica populations under field conditions and that these isolates could be stable in most agroecological systems. Based on these results, mefenoxam-based fungicides are no longer recommended for the management of pink rot once mefenoxam-resistant P. erythroseptica populations are detected in a specific field.

Selection of Biocontrol Agents of Pink Rot Based on Efficacy and Growth Kinetics Index Rankings

The microbiota of 84 different agricultural soils were transferred to separate samples of a γ irradiation-sterilized field soil enriched with potato periderm, and the resulting soils were assayed for biological suppressiveness to Phytophthora erythroseptica and their effect on zoospore production. The 13 most suppressive soil samples, which reduced zoospore production by 14 to 93% and disease severity on tubers by 6 to 21%, were used to isolate 279 organisms. Fourteen strains that reduce pink rot infections in preliminary tests were selected for further study. Six bacterial strains that reduced the severity of disease (P ≤ 0.05, Fischer's protected least significant difference) in subsequent tests were identified as Bacillus simplex (three strains), Pantoea agglomerans, Pseudomonas koreensis, and P. lini. Relative performance indices (RPIs) for biocontrol efficacy and for each of four kinetic parameters, including total colony-forming units (CFU_max), biomass production values (DW_max), cell production after 8 h (OD₈), and time of recovery from oxygen depletion (DT) were calculated for each strain. Overall RPI_Eff,Kin values for each strain then were calculated using strain RPI values for both efficacy (RPI_Eff) and kinetics (RPI_Kin). Strains with the highest RPI_Eff,Kin possess the best biocontrol efficacy of the strains tested and liquid culture growth characteristics that suggest commercial development potential.

A Foliar Blight and Tuber Rot of Potato Caused by Phytophthora nicotianae: New Occurrences and Characterization of Isolates

Phytophthora spp. are pathogenic to many plant species worldwide, and late blight, caused by Phytophthora infestans, and pink rot, caused by P. erythroseptica, are two important diseases of potato. Another Phytophthora sp., P. nicotianae, was recovered from pink-rot-symptomatic tubers collected from commercial fields in Nebraska, Florida, and Missouri in 2005, 2006, and 2007, respectively. P. nicotianae also was recovered from foliage obtained from commercial potato fields in Nebraska and Texas exhibiting symptoms very similar to those of late blight. Isolates of P. cactorum also were recovered from foliar infections in a commercial potato field in Minnesota in 2005. Natural infection of potato foliage by P. cactorum and infection of wounded potato tuber tissue via inoculation with zoospores of P. capsici are reported here for the first time. Isolates of P. nicotianae, regardless of origin, were primarily of the A1 mating type. All isolates of P. nicotianae and P. cactorum were sensitive to the fungicide mefenoxam. Optimum growth of P. nicotianae, P. erythroseptica, and P. cactorum in vitro occurred at 25°C; however, only P. nicotianae sustained growth at 35°C. Regardless of the tissue of origin, all isolates of P. nicotianae and P. cactorum were capable of infecting potato tubers and leaves. However, isolates of P. nicotianae were less aggressive than P. erythroseptica isolates only when tubers were not wounded prior to inoculation. Pink rot incidence varied significantly among potato cultivars following inoculation of nonwounded tubers with zoospores of P. nicotianae, ranging from 51% in Red Norland to 19% in Atlantic. Phytophthora spp. also differed significantly in their ability to infect potato leaves. Highest infection frequencies were obtained with P. infestans and levels of infection varied significantly among P. nicotianae isolates. The rate of foliar lesion expansion was similar among isolates of P. nicotianae and P. infestans. Whereas P. infestans infections yielded profuse sporulation, no sporulation was observed with foliar infections of P. nicotianae.

In-Furrow Applications of Metalaxyl and Phosphite for Control of Pink Rot (Phytophthora erythroseptica) of Potato in New Brunswick, Canada

The efficacy of metalaxyl-m (Ridomil Gold 480EC) and phosphite (Phostrol) applied at planting in-furrow against pink rot (Phytophthora erythroseptica) of potato (Solanum tuberosum) 'Shepody' and 'Russet Burbank' was evaluated in field trials conducted in 2005 and 2006 in Florenceville, New Brunswick, Canada. Inoculum made from a metalaxyl-m-sensitive isolate of P. erythroseptica from New Brunswick was applied either in-furrow as a vermiculite slurry at planting or as a zoospore drench in soils adjacent to potato plants in late August. After harvest, the number and weight of tubers showing pink rot symptoms were assessed and expressed as percentages of the total tuber number and total weight of tubers. Metalaxyl-m applied in-furrow was significantly more effective against pink rot than phosphite. The mean percentage of diseased tubers as a percentage of total tuber weight was 1.5% (2005) and 1.2% (2006) for metalaxyl-m-treated plots and 9.6% (2005) and 2.8% (2006) for phosphite-treated plots, a percentage similar to that obtained in inoculated control plots with no fungicide treatment. The mean percentage of diseased tubers expressed as a percentage of the total number of tubers was 1.7% (2005) and 1.3% (2006) for metalaxyl-m-treated plots and 10.1% (2005) and 3.1% (2006) for phosphite-treated plots. Disease incidence was significantly higher using the late-season inoculation technique (respective means in 2005 and 2006 were 9.9 and 3.8% diseased tubers, by weight, and 10.6 and 3.9%, by number) than with the in-furrow inoculation method (respective means in 2005 and 2006 were 3.3 and 0.7% by weight, and 3.7 and 1.3%, by number). The potato cv. Shepody was significantly more susceptible to pink rot (9.9 and 3.3% diseased tubers, by weight, in 2005 and 2006, respectively, and 10.6 and 3.9%, by number) than Russet Burbank (respective means in 2005 and 2006 were 3.4,% and 1.2%, by weight, and 3.7,% and 1.2%, by number). Our findings indicate that metalaxyl applied in-furrow at planting is a viable option for control of pink rot caused by metalaxyl-sensitive strains of P. erythroseptica, whereas phosphite was ineffective.

Biological Significance of Mefenoxam Resistance in Phytophthora erythroseptica and Its Implications for the Management of Pink Rot of Potato

Tubers from plants treated with in-furrow and foliar applications of mefenoxam were inoculated with eight isolates of Phytophthora erythroseptica having varying levels of sensitivity to the fungicide. Two isolates with effective concentration causing 50% reduction of mycelial growth (EC₅₀) values of 0.02 and 0.04 μg ml^-1 were categorized as being mefenoxam sensitive. Isolates with EC₅₀ values >1.0 μg ml^-1 were designated as insensitive to mefenoxam and were grouped two each into low intermediate (EC₅₀ = 1.1 and 5.3 μg ml^-1), high intermediate (EC₅₀ = 26 and 74 μg ml^-1), and resistant (EC₅₀ ≥ 100 μg ml^-1). The biological significance of these isolates was examined by quantifying disease control. P. erythroseptica isolates classified in the resistant group infected a significantly greater proportion of untreated tubers than isolates in any other group. Mefenoxam reduced infection frequency of sensitive isolates by as much as 37%. Mefenoxam did not provide disease control of any isolate possessing insensitivity to the fungicide, with the greatest decrease in control observed with the low intermediate group. Aggressiveness indices, representing tuber infection frequency and depth of penetration, were calculated for untreated and mefenoxam-treated tubers. According to these indices, both isolates classified in the resistant group and high intermediate isolate 252-4 were more aggressive than sensitive isolates in the absence of mefenoxam pressure, and significantly so in the presence of mefenoxam. These results suggest that pink rot may become more severe in fields known to contain P. erythroseptica populations with mefenoxam EC₅₀ values >1.0 μg ml^-1 if the fungicide is applied. These factors should be considered when developing strategies to manage pink rot and mefenoxam-resistant populations of P. erythroseptica.

Limited Genetic Diversity in North American Isolates of Phytophthora erythroseptica Pathogenic to Potato Based on RAPD Analysis

Pink rot of potato (Solanum tuberosum), caused by Phytophthora erythroseptica, is found wherever potatoes are grown, and in the last decade, it has reemerged as an economically important disease in Canada and the United States. A selection of isolates of P. erythroseptica from major potato-growing regions in North America, namely Prince Edward Island and New Brunswick, Canada, and Maine and Idaho, U.S.A., was assessed for genetic diversity with randomly chosen decanucleotide primers which were used to amplify regions of DNA to reveal polymorphisms among templates (random amplified polymorphic DNA [RAPD]). The isolates varied in their geographic origin as well as in their sensitivity to mefenoxam, as determined by an in vitro assay. In three separate RAPD screens (I, II, and III) with 23 isolates of P. erythroseptica chosen from a larger collection, 1,410, 369, and 316 robust, scorable bands were amplified, respectively. However, among the bands amplified in screens I, II, and III, only 3, 1, and 3 bands, respectively, were polymorphic. When three primers yielding polymorphisms were used to screen 106 isolates from Prince Edward Island and New Brunswick, or a representative collection of 32 isolates from Prince Edward Island, New Brunswick, Maine, and Idaho, no major variation was discovered. RAPD markers were not correlated with geographic origin or mefenoxam sensitivity of the isolates. From an evolutionary standpoint, the absence of genetic diversity among the isolates of P. erythroseptica we examined may be attributable to the relatively recent introduction of a small founding population of the pathogen in North America.

Control of Potato Tuber Rots Caused by Oomycetes with Foliar Applications of Phosphorous Acid

Phosphorous acid for control of tuber rots caused by Phytophthora infestans, P. erythroseptica, and Pythium ultimum was applied to foliage of potato cultivars at various application timings and rates under growing conditions in the Pacific Northwest at Othello and Mount Vernon, WA, and Bonners Ferry and Aberdeen, ID in 2001 to 2003. Efficacy was assessed by artificially inoculating harvested tubers. Mean incidence and severity of late blight tuber rot in tubers inoculated with US-8 and US-11 isolates of Phytophthora infestans usually were significantly less when the foliage from which the tubers were obtained was treated with phosphorous acid than when it was not treated at all locations. With two applications of phosphorous acid, late blight tuber rot in the tuber-resistant cv. Umatilla Russet was significantly less than for Ranger Russet. For phosphorous acid at a rate of 9.37 kg a.i./ha, late blight tuber rot control achieved with two applications at 2-week intervals was not consistently improved across locations by making an additional application 2 weeks later. In 2003, incidence and severity of late blight tuber rot did not differ significantly between the rates of 7.49 and 9.37 kg a.i./ha at both Othello and Mount Vernon. Late blight tuber rot incidence and severity were significantly less at a rate of 7.49 kg a.i./ha when the application schedule began at initial tuber bulking rather than when the first application was made 4 weeks after initial tuber bulking at Othello, but not Mount Vernon. Incidence of pink rot was significantly less in inoculated tubers from plots treated with three applications of phosphorous acid than in tubers from nontreated control plots at Mount Vernon in 2002 and 2003, Bonners Ferry in 2002, and Aberdeen in 2003. Pink rot severity was reduced significantly by both two and three phosphorous acid applications at Mount Vernon in 2002. Pink rot incidence, but not severity, was reduced significantly at all timings when either 7.49 or 9.37 kg a.i./ha was applied at Mount Vernon in 2003. Control of Pythium spp. by phosphorous acid was not evident in this study. Total tuber yield at harvest did not differ significantly among the phosphorous acid treatments and the nontreated control at Othello and Mount Vernon in 2001 and 2002.

Evaluation of Adapted Wheat Cultivars for Tolerance to Pythium Root Rot

Genetic resistance in wheat (Triticum aestivum) against Pythium species would be an efficient means of control of this major root fungal pathogen, but so far no source has been identified. In addition, no long-term, sustainable options for controlling Pythium root rot are available; therefore, identifying and then incorporating genetic resistance into wheat cultivars would create an ideal method of control for this disease. The objective of this study was to examine the level of tolerance to Pythium root rot among a diverse set of wheat germ plasm collected from all major wheat production regions in the United States. Pythium debaryanum isolate 90136 and P. ultimum isolate 90038, previously identified as the most virulent Pythium isolates on wheat, were used to infest pasteurized soil, which was seeded with wheat genotypes and placed in a growth chamber maintained at a constant 16°C with a 12-h photoperiod and ambient humidity. Length of the first leaf and plant height measurements were recorded, and roots were digitally scanned to create computer files that were analyzed using WinRhizo software for length and number of tips. Significant (P < 0.05) differences in plant variables were detected among wheat genotypes in the presence of both Pythium species, and a significant (P < 0.0001) correlation between plant stunting and root loss was detected. Based on both shoot and root measurements, Caledonia, Chinese Spring, MN97695, and OR942504 appear to be highly susceptible to Pythium root rot, whereas genotypes KS93U161, OH708, and Sunco were the most tolerant to this disease.

Differences in Etiology Affect Mefenoxam Efficacy and the Control of Pink Rot and Leak Tuber Diseases of Potato

Data supplementing a previously published survey of North American isolates of Phytophthora erythroseptica and Pythium ultimum demonstrated that the proportion of the populations sensitive to mefenoxam remains high, 79.6 and 96.9% with EC₅₀ sensitivities ranging from <0.01 to 0.9 µg ml^-1 and <0.01 to 0.8 µg ml^-1, respectively. Mefenoxam should provide control of these pathogens in most potato production areas. Factors affecting the development of pink rot and leak in potato tubers and the efficacy of mefenoxam to control these diseases with different etiologies were examined. Results confirmed that P. erythroseptica is capable of directly infecting potato tubers causing pink rot, whereas Pythium ultimum requires a wound to infect and cause leak. Mefenoxam was applied to replicated field plots as a single in-furrow application at planting, as an in-furrow application at planting followed by an additional sidedress application 3 weeks after planting, as a single foliar application when tubers were 7 to 8 mm in diameter, and as two foliar applications when the tubers were 7 to 8 mm in diameter and 14 days later. The recommended label rate plus two additional lower application rates were used with each method. For tubers challenge-inoculated after harvest, mefenoxam was found to be more effective in controlling pink rot relative to leak over all application methods. The greatest level of pink rot control (89%) was attained with the in-furrow at planting and sidedress application. All rates tested provided similar levels of control with this application method, but this method provided only a modest level of leak control (35%), and leak was not controlled by foliar applications of mefenoxam at any rate tested. In contrast, the foliar applications of mefenoxam resulted in 10 to 50% control of pink rot. Since the isolates of both pathogens were highly sensitive to me-fenoxam, disease-specific control was attributed to differences in disease etiology. Therefore, the use of mefenoxam to control pink rot in the field and storage appears to be well founded.