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Camardo Leggieri M, Arciuolo R, Chiusa G, Castello G, Spigolon N, Battilani P. DEFHAZ: A Mechanistic Weather-Driven Predictive Model for Diaporthe eres Infection and Defective Hazelnut Outbreaks. PLANTS (BASEL, SWITZERLAND) 2022; 11:3553. [PMID: 36559665 PMCID: PMC9784339 DOI: 10.3390/plants11243553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Revised: 12/09/2022] [Accepted: 12/13/2022] [Indexed: 06/17/2023]
Abstract
The browning of the internal tissues of hazelnut kernels, which are visible when the nuts are cut in half, as well as the discolouration and brown spots on the kernel surface, are important defects that are mainly attributed to Diaporthe eres. The knowledge regarding the Diaporthe eres infection cycle and its interaction with hazelnut crops is incomplete. Nevertheless, we developed a mechanistic model called DEFHAZ. We considered georeferenced data on the occurrence of hazelnut defects from 2013 to 2020 from orchards in the Caucasus region and Turkey, supported by meteorological data, to run and validate the model. The predictive model inputs are the hourly meteorological data (air temperature, relative humidity, and rainfall), and the model output is the cumulative index (Dh-I), which we computed daily during the growing season till ripening/harvest time. We established the probability function, with a threshold of 1% of defective hazelnuts, to define the defect occurrence risk. We compared the predictions at early and full ripening with the observed data at the corresponding crop growth stages. In addition, we compared the predictions at early ripening with the defects observed at full ripening. Overall, the correct predictions were >80%, with <16% false negatives, which confirmed the model accuracy in predicting hazelnut defects, even in advance of the harvest. The DEFHAZ model could become a valuable support for hazelnut stakeholders.
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Affiliation(s)
- Marco Camardo Leggieri
- Department of Sustainable Crop Production, Università Cattolica del Sacro Cuore, 29121 Piacenza, PC, Italy
| | - Roberta Arciuolo
- Department of Sustainable Crop Production, Università Cattolica del Sacro Cuore, 29121 Piacenza, PC, Italy
| | - Giorgio Chiusa
- Department of Sustainable Crop Production, Università Cattolica del Sacro Cuore, 29121 Piacenza, PC, Italy
| | - Giuseppe Castello
- Soremartec Italia S.r.l., Piazzale Pietro Ferrero 1, 12051 Alba, CN, Italy
| | - Nicola Spigolon
- Soremartec Italia S.r.l., Piazzale Pietro Ferrero 1, 12051 Alba, CN, Italy
| | - Paola Battilani
- Department of Sustainable Crop Production, Università Cattolica del Sacro Cuore, 29121 Piacenza, PC, Italy
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Fungal Grapevine Trunk Diseases in Romanian Vineyards in the Context of the International Situation. Pathogens 2022; 11:pathogens11091006. [PMID: 36145437 PMCID: PMC9503734 DOI: 10.3390/pathogens11091006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2022] [Revised: 08/29/2022] [Accepted: 08/30/2022] [Indexed: 11/17/2022] Open
Abstract
Vitis vinifera, known as the common grape vine, represents one of the most important fruit crops in the world. Romania is a wine-producing country with a rich and long tradition in viticulture. In the last decade, increasing reports of damage caused by grapevine trunk diseases (GTDs) have raised concerns in all wine producing countries. Up to now, no study was performed regarding the GTDs situation in Romania, an important grapevine grower in Europe. In this study, we aim, after a comprehensive presentation of the fungal GTDs worldwide, to review the scientific information related to these diseases in Romania in order to open a national platform in an international framework. In order to achieve this, we consulted over 500 references from different scientific databases and cited 309 of them. Our review concludes that, in Romania, there is little amount of available literature on this matter. Three out of six fungal GTDs are reported and well documented in all of the Romanian viticultural zones (except for viticultural zone 4). These are Eutypa dieback, Phomopsis dieback, and Esca disease. Of the fungal pathogens considered responsible Eutypa lata, Phomopsis viticola and Stereum hirsutum are the most studied and well documented in Romania. Management measures are quite limited, and they mostly include preventive measures to stop the GTDs spread and the removal of affected grapevines.
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Crandall SG, Spychalla J, Crouch UT, Acevedo FE, Naegele RP, Miles TD. Rotting Grapes Don't Improve with Age: Cluster Rot Disease Complexes, Management, and Future Prospects. PLANT DISEASE 2022; 106:2013-2025. [PMID: 35108071 DOI: 10.1094/pdis-04-21-0695-fe] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Cluster rots can be devastating to grape production around the world. There are several late-season rots that can affect grape berries, including Botrytis bunch rot, sour rot, black rot, Phomopsis fruit rot, bitter rot, and ripe rot. Tight-clustered varieties such as 'Pinot gris', 'Pinot noir', and 'Vignoles' are particularly susceptible to cluster rots. Symptoms or signs for these rots range from discolored berries or gray-brown sporulation in Botrytis bunch rot to sour rot, which smells distinctly of vinegar due to the presence of acetic acid bacteria. This review discusses the common symptoms and disease cycles of these different cluster rots. It also includes useful updates on disease diagnostics and management practices, including cultural practices in commercial vineyards and future prospects for disease management. By understanding what drives the development of different cluster rots, researchers will be able to identify new avenues for research to control these critical pathogens.
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Affiliation(s)
- Sharifa G Crandall
- Pennsylvania State University, Department of Plant Pathology & Environmental Microbiology, University Park, PA 16802
| | - Jamie Spychalla
- Pennsylvania State University, Department of Plant Pathology & Environmental Microbiology, University Park, PA 16802
| | - Uma T Crouch
- Pennsylvania State University, Department of Plant Pathology & Environmental Microbiology, University Park, PA 16802
| | - Flor E Acevedo
- Pennsylvania State University, Department of Entomology, University Park, PA 16802
| | - Rachel P Naegele
- United States Department of Agriculture-Agricultural Research Station, Parlier, CA 93648
| | - Timothy D Miles
- Michigan State University, Department of Plant, Soil and Microbial Sciences, East Lansing, MI 48824
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Gonzalez-Dominguez E, Caffi T, Paolini A, Mugnai L, Latinović N, Latinović J, Languasco L, Rossi V. Development and Validation of a Mechanistic Model That Predicts Infection by Diaporthe ampelina, the Causal Agent of Phomopsis Cane and Leaf Spot of Grapevines. FRONTIERS IN PLANT SCIENCE 2022; 13:872333. [PMID: 35463401 PMCID: PMC9021785 DOI: 10.3389/fpls.2022.872333] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Accepted: 03/23/2022] [Indexed: 05/29/2023]
Abstract
Phomopsis cane and leaf spot (PCLS), known in Europe as "excoriose," is an important fungal disease of grapevines caused by Diaporthe spp., and most often by Diaporthe ampelina (synonym Phomopsis viticola). PCLS is re-emerging worldwide, likely due to climate change, changes in the management of downy mildew from calendar- to risk-based criteria that eliminate early-season (unnecessary) sprays, and the progressive reduction in the application of broad-spectrum fungicides. In this study, a mechanistic model for D. ampelina infection was developed based on published information. The model accounts for the following processes: (i) overwintering and maturation of pycnidia on affected canes; (ii) dispersal of alpha conidia to shoots and leaves; (iii) infection; and (iv) onset of disease symptoms. The model uses weather and host phenology to predict infection periods and disease progress during the season. Model output was validated against 11 independent PCLS epidemics that occurred in Italy (4 vineyards in 2019 and 2020) and Montenegro (3 vineyards in 2020). The model accurately predicted PCLS disease progress, with a concordance correlation coefficient (CCC) = 0.925 between observed and predicted data. A ROC analysis (AUROC>0.7) confirmed the ability of the model to predict the infection periods leading to an increase in PCLS severity in the field, indicating that growers could use the model to perform risk-based fungicide applications.
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Affiliation(s)
| | - Tito Caffi
- Department of Sustainable Crop Production (DI.PRO.VES.), Università Cattolica del Sacro Cuore, Piacenza, Italy
| | - Aurora Paolini
- Department of Agricultural, Food, Environmental and Forestry Science and Technology (DAGRI), Plant Pathology and Entomology Section, University of Florence, Firenze, Italy
| | - Laura Mugnai
- Department of Agricultural, Food, Environmental and Forestry Science and Technology (DAGRI), Plant Pathology and Entomology Section, University of Florence, Firenze, Italy
| | | | - Jelena Latinović
- Biotechnical Faculty, University of Montenegro, Podgorica, Montenegro
| | - Luca Languasco
- Department of Sustainable Crop Production (DI.PRO.VES.), Università Cattolica del Sacro Cuore, Piacenza, Italy
| | - Vittorio Rossi
- Department of Sustainable Crop Production (DI.PRO.VES.), Università Cattolica del Sacro Cuore, Piacenza, Italy
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Valeriano T, Fischer K, Ginaldi F, Giustarini L, Castello G, Bregaglio S. Rotten Hazelnuts Prediction via Simulation Modeling-A Case Study on the Turkish Hazelnut Sector. FRONTIERS IN PLANT SCIENCE 2022; 13:766493. [PMID: 35444678 PMCID: PMC9014268 DOI: 10.3389/fpls.2022.766493] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/29/2021] [Accepted: 02/21/2022] [Indexed: 06/14/2023]
Abstract
The quality defects of hazelnut fruits comprise changes in morphology and taste, and their intensity mainly depends on seasonal environmental conditions. The strongest off-flavor of hazelnuts is known as rotten defect, whose candidate causal agents are a complex of fungal pathogens, with Diaporthe as the dominant genus. Timely indications on the expected incidence of rotten defect would be essential for buyers to identify areas where hazelnut quality will be superior, other than being useful for farmers to have the timely indications of the risk of pathogens infection. Here, we propose a rotten defect forecasting model, and we apply it in the seven main hazelnut producing municipalities in Turkey. We modulate plant susceptibility to fungal infection according to simulated hazelnut phenology, and we reproduce the key components of the Diaporthe spp. epidemiological cycle via a process-based simulation model. A model sensitivity analysis has been performed under contrasting weather conditions to select most relevant parameters for calibration, which relied on weekly phenological observations and the post-harvest analyses of rotten incidence in the period 2016-2019, conducted in 22 orchards. The rotten simulation model reproduced rotten incidence data in calibration and validation datasets with a mean absolute error below 1.8%. The dataset used for model validation (321 additional sampling locations) has been characterized by large variability of rotten incidence, in turn contributing to decrease the correlation between reference and simulated data (R 2 = 0.4 and 0.21 in West and East Black Sea region, respectively). This denotes the key effect of other environmental and agronomic factors on rotten incidence, which are not yet taken into account by the predictive workflow and will be considered in further improvements. When applied in spatially distributed simulations, the model differentiated the rotten incidence across municipalities, and reproduced the interannual variability of rotten incidence. Our results confirmed that the rotten defect is strictly dependent on precipitation amount and timing, and that plant susceptibility is crucial to trigger fungal infections. Future steps will envisage the application of the rotten simulation model to other hazelnut producing regions, before being operationally used for in-season forecasting activities.
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Affiliation(s)
- Taynara Valeriano
- Council for Agricultural Research and Economics (CREA), Research Centre for Agriculture and Environment, Bologna, Italy
- Ferrero Hazelnut Company, Ferrero Trading Lux S.A., Senningerberg, Luxembourg
| | - Kim Fischer
- Ferrero Hazelnut Company, Ferrero Trading Lux S.A., Senningerberg, Luxembourg
| | - Fabrizio Ginaldi
- Council for Agricultural Research and Economics (CREA), Research Centre for Agriculture and Environment, Bologna, Italy
| | | | | | - Simone Bregaglio
- Council for Agricultural Research and Economics (CREA), Research Centre for Agriculture and Environment, Bologna, Italy
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6
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González-Domínguez E, Caffi T, Languasco L, Latinovic N, Latinovic J, Rossi V. Dynamics of Diaporthe ampelina Conidia Released from Grape Canes that Overwintered in the Vineyard. PLANT DISEASE 2021; 105:3092-3100. [PMID: 33755509 DOI: 10.1094/pdis-12-20-2639-re] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Phomopsis cane and leaf spot (PCLS) is an important disease of grapevines that is mainly caused by Diaporthe ampelina. Dispersal dynamics of D. ampelina spores were investigated in two vineyards, one in northern Italy and one in Montenegro, by using spore samplers that collected α- and β-conidia from rain water running off from PCLS-affected canes. The canes were collected from each vineyard, deployed, and overwintered in the corresponding vineyards. In each of three years (2016, 2017, and 2018), conidial dispersal was investigated during one (Montenegro) or two (Italy) growing seasons following the deployment of the PCLS-affected canes. In the first growing season following cane deployment in both vineyards, α-conidia were mostly found in runoff water after grapevine bud break, especially in April and May, and β-conidia were regularly found in numbers comparable to those of α-conidia, most frequently from June to September. In Italy, high numbers of α- and β-conidia were also collected during the second growing season following cane deployment. The dispersal dynamics of α-conidia over time were described by a Gompertz equation using hydrothermal time (i.e., the accumulated effect of temperature on the maturation rate of pycnidia on days in which the number of hours of wetness was ≥6 or 9 h), with R2 and concordance correlation coefficient >0.9. Rain (≥0.2 mm) was a good predictor of conidial dispersal, with an overall accuracy of 0.97. These results increase our understanding of D. ampelina spore dispersal and should be integrated into warning systems for PCLS management.
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Affiliation(s)
| | - Tito Caffi
- Department of Sustainable Crop Production (DI.PRO.VES.), Università Cattolica del Sacro Cuore, 29122 Piacenza, Italy
| | - Luca Languasco
- Department of Sustainable Crop Production (DI.PRO.VES.), Università Cattolica del Sacro Cuore, 29122 Piacenza, Italy
| | - Nedeljko Latinovic
- Biotechnical Faculty, University of Montenegro, Biotechnical Faculty, 81000 Podgorica, Montenegro
| | - Jelena Latinovic
- Biotechnical Faculty, University of Montenegro, Biotechnical Faculty, 81000 Podgorica, Montenegro
| | - Vittorio Rossi
- Department of Sustainable Crop Production (DI.PRO.VES.), Università Cattolica del Sacro Cuore, 29122 Piacenza, Italy
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7
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Adapting Models to Warn Fungal Diseases in Vineyards Using In-Field Internet of Things (IoT) Nodes. SUSTAINABILITY 2019. [DOI: 10.3390/su11020416] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Weather conditions are one of the main threats that can lead to diseases in crops. Unfavourable conditions, such as rain or high humidity, can produce a risk of fungal diseases. Meteorological monitoring is vital to have some indication of a possible infection. The literature contains a wide variety of models for warning for this type of disease.These are capable of warning when an infection may be present. Devices (weather stations) able to measure weather conditions in real-time are needed to know precisely when an infection occurs in a smallholding. Besides, such models cannot be executed at the same time in which the observations are collected; in fact, these models are usually executed in batches at a rate of one per day. Therefore, these models need to be adapted to run at the same frequency as that at which observations are collected so that a possible disease can be dealt with as early as possible. The primary aim of this work is to adapt disease warning models to run in (near) real-time over meteorological variables generated by Internet of Things (IoT) devices, in order to inform farmers as quickly as possible if their crop is in danger of being infected by diseases, and to enable them to tackle the infection with the appropriate treatments. The work is centered on vineyards and has been tested in four different smallholdings in the province of Castellón (Spain).
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8
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Barba P, Lillis J, Luce RS, Travadon R, Osier M, Baumgartner K, Wilcox WF, Reisch BI, Cadle-Davidson L. Two dominant loci determine resistance to Phomopsis cane lesions in F 1 families of hybrid grapevines. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2018; 131:1173-1189. [PMID: 29468460 PMCID: PMC5895676 DOI: 10.1007/s00122-018-3070-1] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2017] [Accepted: 02/15/2018] [Indexed: 05/20/2023]
Abstract
KEY MESSAGE Rapid characterization of novel NB-LRR-associated resistance to Phomopsis cane spot on grapevine using high-throughput sampling and low-coverage sequencing for genotyping, locus mapping and transcriptome analysis provides insights into genetic resistance to a hemibiotrophic fungus. Phomopsis cane and leaf spot, caused by the hemibiotrophic fungus Diaporthe ampelina (syn = Phomopsis viticola), reduces the productivity in grapevines. Host resistance was studied on three F1 families derived from crosses involving resistant genotypes 'Horizon', Illinois 547-1, Vitis cinerea B9 and V. vinifera 'Chardonnay'. All families had progeny with extremely susceptible phenotypes, developing lesions on both dormant canes and maturing fruit clusters. Segregation of symptoms was observed under natural levels of inoculum in the field, while phenotypes on green shoots were confirmed under controlled inoculations in greenhouse. High-density genetic maps were used to localize novel qualitative resistance loci named Rda1 and Rda2 from V. cinerea B9 and 'Horizon', respectively. Co-linearity between reference genetic and physical maps allowed localization of Rda2 locus between 1.5 and 2.4 Mbp on chromosome 7, and Rda1 locus between 19.3 and 19.6 Mbp of chromosome 15, which spans a cluster of five NB-LRR genes. Further dissection of this locus was obtained by QTL mapping of gene expression values 14 h after inoculation across a subset of the 'Chardonnay' × V. cinerea B9 progeny. This provided evidence for the association between transcript levels of two of these NB-LRR genes with Rda1, with increased NB-LRR expression among susceptible progeny. In resistant parent V. cinerea B9, inoculation with D. ampelina was characterized by up-regulation of SA-associated genes and down-regulation of ethylene pathways, suggesting an R-gene-mediated response. With dominant effects associated with disease-free berries and minimal symptoms on canes, Rda1 and Rda2 are promising loci for grapevine genetic improvement.
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Affiliation(s)
- Paola Barba
- Plant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA.
- Instituto de Investigaciones Agropecuarias, INIA La Platina, Santa Rosa, 11610, Santiago, Chile.
| | | | - R Stephen Luce
- Horticulture Section, School of Integrative Plant Science, New York State Agricultural Experiment Station, Cornell University, Geneva, NY, 14456, USA
| | - Renaud Travadon
- Department of Plant Pathology, University of California, Davis, CA, 95616, USA
| | - Michael Osier
- Thomas H. Gosnell School of Life Sciences, Rochester Institute of Technology, Rochester, NY, 14623, USA
| | - Kendra Baumgartner
- USDA-Agricultural Research Service, Crops Pathology and Genetics Research Unit, Davis, CA, 95616, USA
| | - Wayne F Wilcox
- Plant Pathology Section, School of Integrative Plant Science, New York State Agricultural Experiment Station, Cornell University, Geneva, NY, 14456, USA
| | - Bruce I Reisch
- Horticulture Section, School of Integrative Plant Science, New York State Agricultural Experiment Station, Cornell University, Geneva, NY, 14456, USA
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9
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Morphological and molecular characterisation of Diaporthe species associated with grapevine trunk disease in China. Fungal Biol 2014; 119:283-94. [PMID: 25937058 DOI: 10.1016/j.funbio.2014.11.003] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2014] [Revised: 10/30/2014] [Accepted: 11/09/2014] [Indexed: 10/24/2022]
Abstract
Trunk diseases in grapevine (Vitis spp.) are major problems in the wine and table-grape industries reducing the productivity, quality and longevity of vineyards. Species of Diaporthe are important fungal pathogens of grapevine trunk disease worldwide. A survey of 14 grape vineyards located in different provinces of China was yielded Diaporthe isolates associated with symptomatic grapevine wood. These isolates were identified based on morphology and a combined data matrix of rDNA ITS, partial sequences of translation elongation factor 1-α (EF 1-α), β-tubulin (TUB) and calmodulin (CAL) gene regions. Four species of Diaporthe were identified, which included Diaporthe eres, Diaporthe hongkongensis, Diaporthe phaseolorum and Diaporthe sojae. All isolates of Diaporthe caused disease on detached grape shoots in pathogenicity experiments but differed in virulence. The incidence in local vineyards and the pathogenicity results indicate that D. eres is an important pathogen of grapevine in Chinese vineyards, where it may significantly limit grape production. This is the first detailed report of Diaporthe species associated with grapevine trunk diseases in China with morphology, pathogenicity and molecular data.
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10
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Úrbez-Torres JR, Peduto F, Smith RJ, Gubler WD. Phomopsis Dieback: A Grapevine Trunk Disease Caused by Phomopsis viticola in California. PLANT DISEASE 2013; 97:1571-1579. [PMID: 30716818 DOI: 10.1094/pdis-11-12-1072-re] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Field surveys recently conducted in California and in other grape-growing regions in the United States showed Phomopsis viticola to be one of the most prevalent fungi isolated from grapevine perennial cankers in declining vines. The current study has not only confirmed the presence of P. viticola from grapevine cankers in California but also has for the first time revealed the occurrence of Diaporthe ambigua, D. eres, and D. neotheicola in symptomatic grapevine wood in California by means of morphological studies and multi-gene sequence analysis. Pathogenicity trials conducted on mature cordons of Vitis vinifera 'Syrah' and 'Red Globe', as well as on lignified Syrah dormant canes, showed P. viticola isolates from California to be capable of causing perennial cankers. Lengths of vascular discoloration caused by P. viticola were similar to those caused by Eutypa lata and several Botryosphaeriaceae spp., which are well-known grapevine trunk disease pathogens. Additionally, a lack of spring growth was commonly observed in dormant canes inoculated with P. viticola spore suspensions in two pathogenicity trials. As part of this study, V. vinifera 'Cabernet Sauvignon' and 'Zinfandel' wood was shown to be more susceptible to infection by P. viticola than 'Barbera', 'Chardonnay', 'Merlot', and 'Thompson Seedless' wood. After more than 40 years overlooking P. viticola as a grapevine wood pathogen, this study provides strong evidence of the role of P. viticola as a canker-causing organism, and suggests its addition to the fungi involved in the grapevine trunk disease complex. Results from this study suggest D. ambigua and D. neotheicola to be saprophytes or weak pathogens on grapevine wood.
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Affiliation(s)
- J R Úrbez-Torres
- Department of Plant Pathology, University of California, Davis, CA 95616
| | - F Peduto
- Department of Plant Pathology, University of California, Davis, CA 95616
| | - R J Smith
- University of California Cooperative Extension, Sonoma County, Santa Rosa, CA 95403
| | - W D Gubler
- Department of Plant Pathology, University of California Davis, Davis, CA 95616
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11
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Baumgartner K, Fujiyoshi PT, Travadon R, Castlebury LA, Wilcox WF, Rolshausen PE. Characterization of Species of Diaporthe from Wood Cankers of Grape in Eastern North American Vineyards. PLANT DISEASE 2013; 97:912-920. [PMID: 30722541 DOI: 10.1094/pdis-04-12-0357-re] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
In eastern North America, Phomopsis cane and leaf spot, caused by Phomopsis viticola, is a foliar disease of grape but, in the Mediterranean climate of western North America, P. viticola is primarily associated with wood cankers, along with other Diaporthe spp. To determine the identity of wood-infecting Diaporthe spp. in eastern North America, 65 isolates were cultured from 190 wood-canker samples from 23 vineyards with a history of Phomopsis cane and leaf spot. Identification of 29 representative isolates was based initially on morphology, followed by phylogenetic analyses of DNA sequences of the ribosomal DNA internal transcribed spacer region, elongation factor subunit 1-α, and actin in comparison with those of type specimens. Three species were identified: P. viticola, P. fukushii, and Diaporthe eres. Inoculations onto woody stems of potted Vitis labruscana 'Concord' and V. vinifera 'Chardonnay' showed that D. eres and P. fukushii were pathogenic (mean lesion lengths of 7.4 and 7.1 mm, respectively, compared with 3.5 mm for noninoculated controls) but significantly less so than wood-canker and leaf-spot isolates of P. viticola (13.5 mm). All three species infected pruning wounds of Concord and Chardonnay in the field. Our finding of pathogenic, wood-infecting Diaporthe spp. in all 23 vineyards suggests a frequent co-occurrence of the foliar symptoms of Phomopsis cane and leaf spot and wood cankers, although the latter are not always due to P. viticola.
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Affiliation(s)
- Kendra Baumgartner
- Crops Pathology and Genetics Research Unit, United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Davis, CA 95616
| | - Phillip T Fujiyoshi
- Crops Pathology and Genetics Research Unit, United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Davis, CA 95616
| | - Renaud Travadon
- Department of Plant Pathology, University of California, Davis
| | - Lisa A Castlebury
- Systematic Mycology and Microbiology Laboratory, USDA-ARS, Beltsville, MD 20705
| | - Wayne F Wilcox
- Department of Plant Pathology and Plant Microbe Biology, Cornell University, Geneva, NY 14853
| | - Philippe E Rolshausen
- Department of Plant Pathology and Microbiology, University of California, Riverside 92521
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12
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Anco DJ, Madden LV, Ellis MA. Effects of Temperature and Wetness Duration on the Sporulation Rate of Phomopsis viticola on Infected Grape Canes. PLANT DISEASE 2013; 97:579-589. [PMID: 30722187 DOI: 10.1094/pdis-07-12-0666-re] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Controlled-environment studies were conducted to examine effects of temperature (T) and wetness duration (W) on the sporulation rate of Phomopsis viticola on infected grape canes and to determine effects of interrupted wetness duration (IWD) on sporulation. A split-plot design was used to determine T and W effects, with T (5, 12, 15, 18, 20, 22, 25, 28, and 35°C) as the whole-plot and W (11, 23, 35, 47, and 71 h) as the subplot. Linear and nonlinear mixed models were fitted to the data. Lower and upper limits of sporulation were estimated to be 4 and 36°C, respectively, based on the modeling results, optimum sporulation was near 21°C, and sporulation increased monotonically with increasing wetness duration. Of the examined models, a generalization of the Analytis Beta model fit the data best, based on a collection of goodness-of-fit statistical criteria. To determine effects of IWD, a split-plot was used, with T (12, 15, and 20°C) as the whole-plot and IWD (0, 2, 4, 8, 12, and 24 h) as the subplot. Generally, sporulation declined with increasing IWD. An IWD of 8 h or more resulted in significantly and substantially less sporulation compared to the control (0 h IWD) (P < 0.01). Temporal patterns of spore density in the field were determined using a repeated-measures design, in which spore density and environmental data were measured in the vineyard during and following individual rain events over 3 years. The developed model from the controlled-environment study, coupled with a time-of-season weight function and a dispersal index (based on total rain per rain episode), predicted the trend in spore density over time reasonably well, although the total magnitude of spore density could not be predicted because the density of lesions was not known. Results can be used for improving the accuracy of a disease warning system that currently only considers infection of grapes by P. viticola.
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Affiliation(s)
- D J Anco
- The Ohio State University, Department of Plant Pathology, Ohio Agricultural Research and Development Center, 1680 Madison Avenue, Wooster, Ohio 44691
| | - L V Madden
- The Ohio State University, Department of Plant Pathology, Ohio Agricultural Research and Development Center, 1680 Madison Avenue, Wooster, Ohio 44691
| | - M A Ellis
- The Ohio State University, Department of Plant Pathology, Ohio Agricultural Research and Development Center, 1680 Madison Avenue, Wooster, Ohio 44691
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Anco DJ, Madden LV, Ellis MA. Temporal Patterns of Sporulation Potential of Phomopsis viticola on Infected Grape Shoots, Canes, and Rachises. PLANT DISEASE 2012; 96:1297-1302. [PMID: 30727149 DOI: 10.1094/pdis-09-11-0806-re] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Phomopsis cane and leaf spot on Vitis spp. (grape) is currently understood to be monocyclic, with primary inoculum only being produced early in the growing season. However, of the few published studies pertaining to sporulation of Phomopsis viticola, none specifically examined rachises, and none were designed to determine when infected tissues become capable of sporulation. The objective of these studies was to determine when grape shoots, canes, and rachises infected with P. viticola develop the capacity to sporulate, and to determine the time period during which those tissues remain capable of sporulation. Starting in 2009 and 2010, infected first-year shoots and rachises were collected biweekly throughout the growing season, into the dormant season, and into the following growing season. Tissues were collected from 'Catawba,' 'Concord,' and 'Reliance' vineyards. Samples were observed for sporulation after 48 h of incubation in a moist chamber at 23°C; the magnitude of the conidia production under these optimal conditions was considered the sporulation potential. For infections that occurred in 2009 and 2010, the production of conidia was not observed until after harvest. In the year following infection, sporulation potential was found from about bud break until shortly after the end of bloom. There was a generally consistent temporal pattern to relative sporulation potential across sampled vineyards, years, and grape tissues (rachises and canes), described by a modified β model, with peak sporulation potential occurring around 16 May. These results confirmed that Phomopsis cane and leaf spot is a monocyclic disease and support control recommendations for use of fungicides in spring.
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Affiliation(s)
- D J Anco
- The Ohio State University, Department of Plant Pathology, Ohio Agricultural Research and Development Center, Wooster 44691
| | - L V Madden
- The Ohio State University, Department of Plant Pathology, Ohio Agricultural Research and Development Center, Wooster 44691
| | - M A Ellis
- The Ohio State University, Department of Plant Pathology, Ohio Agricultural Research and Development Center, Wooster 44691
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Anco DJ, Kim S, Mitchell TK, Madden LV, Ellis MA. Transformation of Phomopsis viticola with the green fluorescent protein. Mycologia 2009; 101:853-8. [PMID: 19927750 DOI: 10.3852/09-007] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Phomopsis viticola is the causal agent of Phomopsis cane and leaf spot on Vitis spp., a persistent and economically important disease in temperate regions. Here we describe the transformation of this fungus with two different constructs (pBHt2_sGFP and pIGPAPA) containing the green fluorescent protein (GFP) and the hygromycin B resistance gene (hph). Protoplast-mediated transformation yielded mitotically stable transformants with no change in virulence on grape internodes and leaves in comparison to the wild type. These transformants will be critical tools for elucidating fungal penetration of host plants, invasive growth and the nature of its host association.
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Affiliation(s)
- Daniel J Anco
- Ohio State University, Department of Plant Pathology, 1680 Madison Avenue, Wooster, Ohio 44691, USA
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Furuya H, Takanashi H, Fuji SI, Nagai Y, Naito H. Modeling infection of spring onion by Puccinia allii in response to temperature and leaf wetness. PHYTOPATHOLOGY 2009; 99:951-956. [PMID: 19594314 DOI: 10.1094/phyto-99-8-0951] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
The influence of temperature and leaf wetness duration on infection of spring onion (Japanese bunching onion) leaves by Puccinia allii was examined in controlled-environment experiments. Leaves of potted spring onion plants (Allium fistulosum cv. Yoshikura) were inoculated with urediniospores and exposed to 6.5, 10, 15, 22, or 27 h of wetness at 5, 10, 15, 20, or 25 degrees C. The lesion that developed increased in density with increasing wetness duration. Relative infection was modeled as a function of both temperature and wetness duration using the modified version of Weibull's cumulative distribution function (R(2) = 0.9369). Infection occurred between 6.5 and 27 h of leaf wetness duration at 10, 15, 20, and 25 degrees C and between 10 and 27 h at 5 degrees C, and increased rapidly between 6.5 and 15 h of wetness at 10, 15, and 20 degrees C. At 25 degrees C, few uredinia developed regardless of the wetness duration. Parameter H, one of eight parameters used in the equation and which controls the asymmetry in the response curve, varied markedly according to the temperature, so that the model could be improved by representing H as a function of wetness duration (R(2) = 0.9501).
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Affiliation(s)
- Hiromitsu Furuya
- Faculty of Biological Resources, Akita Prefectural University, Shimoshinjo, Akita, Japan.
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Nita M, Ellis MA, Madden LV. Variation in Disease Incidence of Phomopsis Cane and Leaf Spot of Grape in Commercial Vineyards in Ohio. PLANT DISEASE 2008; 92:1053-1061. [PMID: 30769539 DOI: 10.1094/pdis-92-7-1053] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
A statewide survey for incidence of Phomopsis cane and leaf spot of grape (caused by Phomopsis viticola) was conducted during the 2002 to 2004 growing seasons. Over the 3 years, disease was observed in all surveyed vineyards, and mean disease incidence for leaves and internodes was 42 and 50%, respectively. A hierarchical linear mixed model was used to evaluate effects of region, farm within region, vineyard within farm, sampling site (i.e., vine) within vineyard, and shoot (i.e., cane) within vine on disease incidence. Region of the state did not have a significant effect on incidence but there was significant variation at all other levels of the hierarchy (P < 0.05); the greatest variation was at the lowest scale (shoots within vines). The potential effects of weather and management practices on disease risk at the vineyard scale were determined by using nonparametric correlation and binary logistic analyses after first classifying mean incidence per vineyard as being below or above 20% (D20 = 0,1) and 40% (D40 = 0,1). Overall results indicated that variables for predicted number of moderate infection events (DM; based on ambient temperature and hours when either there was measured rainfall or relative humidity above 90%), the extent of fungicide application (C) during early- and mid-May (M1 and M2, respectively), and the use of a dormant-period application of fungicide (DOR) were the key factors in predicting disease risk (for either D20 or D40). Accuracy (percentage of high and low disease vineyards correctly predicted) and area under the receiver operating characteristic curve (an overall measure of the accuracy of a model) for a generic model combining these predictor variables were 74 and 0.84, respectively, for D40 and 87 and 0.97, respectively, for D20. Models based on management practices were as accurate as those that incorporated weather variables. Although the degree of control of this disease is inadequate in Ohio, based on the survey results for incidence, the results from the risk-model analysis showed that improved management might be obtained by applying fungicide early during the growing season.
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Affiliation(s)
- M Nita
- Kansas State University, Manhattan 66506
| | - M A Ellis
- The Ohio State University, Ohio Agricultural Research and Development Center, Wooster 44691
| | - L V Madden
- The Ohio State University, Ohio Agricultural Research and Development Center, Wooster 44691
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Nita M, Ellis MA, Wilson LL, Madden LV. Evaluation of a Disease Warning System for Phomopsis Cane and Leaf Spot of Grape: A Field Study. PLANT DISEASE 2006; 90:1239-1246. [PMID: 30781108 DOI: 10.1094/pd-90-1239] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
A field evaluation of a warning system for Phomopsis cane and leaf spot of grape (Vitis spp.), caused by Phomopsis viticola, was conducted in Ohio over 3 years (2002 to 2004) by applying fungicides and fungicide-adjuvant combinations based on predicted infection events. Three different criteria for risk-light, moderate, and high-were evaluated with the warning system. The warning system is based on measured weather conditions (temperature and wetness duration following rain) and a model for risk of leaf and internode infection. Vines were sprayed with fungicides based on either the warning system or a calendar-based 7-day protectant program, from 2.5-cm shoot growth (Eichhorn-Lorenz [E-L] stage 7) to the end of the broom (E-L stage 27). Fungicides were tested with or without an adjuvant (JMS Stylet-Oil or Regulaid). In the controls, the mean percentage of leaves and internodes with infections ranged from 36 to 100%, the number of lesions per leaf ranged from 1 to 28, and percentage of internodes covered by lesions ranged from 1 to 12%. Both the calendar-based protectant treatment (based on use of mancozeb) and the warning system treatment based on spraying in response to light or moderate predicted infection events (especially with mancozeb + Regulaid) resulted in significantly less disease incidence and severity compared with the controls. The mean percent control (relative difference in disease between a treatment and the control) was higher for the protectant schedule (˜55% and ˜80% for incidence and severity, respectively, based on application of mancozeb) than for the warning system (˜36% and ˜60% for incidence and severity, respectively, based on application of mancozeb + Regulaid), but there were two to three times more fungicide applications with the protectant schedule than with the warning system.
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Affiliation(s)
- M Nita
- The Ohio State University, Ohio Agricultural Research and Development Center, 1680 Madison Ave., Wooster, OH 44691
| | - M A Ellis
- The Ohio State University, Ohio Agricultural Research and Development Center, 1680 Madison Ave., Wooster, OH 44691
| | - L L Wilson
- The Ohio State University, Ohio Agricultural Research and Development Center, 1680 Madison Ave., Wooster, OH 44691
| | - L V Madden
- The Ohio State University, Ohio Agricultural Research and Development Center, 1680 Madison Ave., Wooster, OH 44691
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Magarey RD, Sutton TB, Thayer CL. A simple generic infection model for foliar fungal plant pathogens. PHYTOPATHOLOGY 2005; 95:92-100. [PMID: 18943841 DOI: 10.1094/phyto-95-0092] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
ABSTRACT In this study, a simple generic infection model was developed for predicting infection periods by fungal foliar pathogens. The model is designed primarily for use in forecasting pathogens that do not have extensive epidemiological data. Most existing infection models require a background epidemiological data set, usually including laboratory estimates of infection at multiple temperature and wetness combinations. The model developed in this study can use inputs based on subjective estimates of the cardinal temperatures and the wetness duration requirement. These inputs are available for many pathogens or may be estimated from related pathogens. The model uses a temperature response function which is scaled to the minimum and optimum values of the surface wetness duration requirement. The minimum wetness duration requirement (W(min)) is the number of hours required to produce 20% disease incidence or 5% disease severity on inoculated plant parts at a given temperature. The model was validated with published data from 53 controlled laboratory studies, each with at least four combinations of temperature and wetness. Validation yielded an average correlation coefficient of 0.83 and a root mean square error of 4.9 h, but there was uncertainty about the value of the input parameters for some pathogens. The value of W(min) varied from 1 to 48 h and was relatively uniform for species in the genera Cercospora, Alternaria, and Puccinia but less so for species of Phytophthora, Venturia, and Colletotrichum. Operationally, infection models may use hourly or daily weather inputs. In the case of the former, information also is required to estimate the critical dry-period interruption value, defined as the duration of a dry period at relative humidities <95% that will result in a 50% reduction in disease compared with a continuous wetness period. Pathogens were classified into three groups based on their critical dry-period interruption value. The infection model is being used to create risk maps of exotic pests for the U.S. Department of Agriculture's Animal Plant Health and Inspection Service.
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