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Paunovic Pantic J, Vucevic D, Radosavljevic T, Corridon PR, Valjarevic S, Cumic J, Bojic L, Pantic I. Machine learning approaches to detect hepatocyte chromatin alterations from iron oxide nanoparticle exposure. Sci Rep 2024; 14:19595. [PMID: 39179629 PMCID: PMC11344034 DOI: 10.1038/s41598-024-70559-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Accepted: 08/19/2024] [Indexed: 08/26/2024] Open
Abstract
This study focuses on developing machine learning models to detect subtle alterations in hepatocyte chromatin organization due to Iron (II, III) oxide nanoparticle exposure, hypothesizing that exposure will significantly alter chromatin texture. A total of 2000 hepatocyte nuclear regions of interest (ROIs) from mouse liver tissue were analyzed, and for each ROI, 5 different parameters were calculated: Long Run Emphasis, Short Run Emphasis, Run Length Nonuniformity, and 2 wavelet coefficient energies obtained after the discrete wavelet transform. These parameters served as input for supervised machine learning models, specifically random forest and gradient boosting classifiers. The models demonstrated relatively robust performance in distinguishing hepatocyte chromatin structures belonging to the group exposed to IONPs from the controls. The study's findings suggest that iron oxide nanoparticles induce substantial changes in hepatocyte chromatin distribution and underscore the potential of AI techniques in advancing hepatocyte evaluation in physiological and pathological conditions.
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Affiliation(s)
- Jovana Paunovic Pantic
- Department of Pathophysiology, Faculty of Medicine, University of Belgrade, Dr. Subotica 9, 11129, Belgrade, Serbia
| | - Danijela Vucevic
- Department of Pathophysiology, Faculty of Medicine, University of Belgrade, Dr. Subotica 9, 11129, Belgrade, Serbia
| | - Tatjana Radosavljevic
- Department of Pathophysiology, Faculty of Medicine, University of Belgrade, Dr. Subotica 9, 11129, Belgrade, Serbia
| | - Peter R Corridon
- Department of Immunology and Physiology, College of Medicine and Health Sciences, Khalifa University of Science and Technology, PO Box 127788, Abu Dhabi, UAE.
- Department of Biomedical Engineering, Healthcare Engineering Innovation Center, Khalifa University of Science and Technology, PO Box 127788, Abu Dhabi, UAE.
- Center for Biotechnology, Khalifa University of Science and Technology, PO Box 127788, Abu Dhabi, UAE.
- Department of Biomedical Engineering and Biotechnology, College of Medicine and Health Sciences, Khalifa University of Science and Technology, PO Box 127788, Abu Dhabi, UAE.
| | - Svetlana Valjarevic
- Faculty of Medicine, Clinical Hospital Center Zemun, University of Belgrade, Vukova 9, 11000, Belgrade, Serbia
| | - Jelena Cumic
- Faculty of Medicine, University of Belgrade, University Clinical Centre of Serbia, Dr. Koste Todorovića 8, 11129, Belgrade, Serbia
| | - Ljubisa Bojic
- Institute for Artificial Intelligence Research and Development of Serbia, Fruškogorska 1, 21000, Novi Sad, Serbia
| | - Igor Pantic
- Department of Medical Physiology, Faculty of Medicine, University of Belgrade, Visegradska 26/II, 11129, Belgrade, Serbia.
- University of Haifa, 199 Abba Hushi Blvd, Mount Carmel, 3498838, Haifa, Israel.
- Department of Physiology and Cell Biology, Faculty of Health Sciences, Ben-Gurion University of the Negev, 84105, Be'er Sheva, Israel.
- Department of Pharmacology, College of Medicine and Health Sciences, Khalifa University of Science and Technology, PO Box 127788, Abu Dhabi, UAE.
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