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Ji S, Bozovic D, Bruinsma R. Amphibian sacculus and the forced Kuramoto model with intrinsic noise and frequency dispersion. Phys Rev E 2018; 97:042411. [PMID: 29758728 DOI: 10.1103/physreve.97.042411] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2017] [Indexed: 06/08/2023]
Abstract
The amphibian sacculus (AS) is an end organ that specializes in the detection of low-frequency auditory and vestibular signals. In this paper, we propose a model for the AS in the form of an array of phase oscillators with long-range coupling, subject to a steady load that suppresses spontaneous oscillations. The array is exposed to significant levels of frequency dispersion and intrinsic noise. We show that such an array can be a sensitive and robust subthreshold detector of low-frequency stimuli, though without significant frequency selectivity. The effects of intrinsic noise and frequency dispersion are contrasted. Intermediate levels of intrinsic noise greatly enhance the sensitivity through stochastic resonance. Frequency dispersion, on the other hand, only degrades detection sensitivity. However, frequency dispersion can play a useful role in terms of the suppression of spontaneous activity. As a model for the AS, the array parameters are such that the system is poised near a saddle-node bifurcation on an invariant circle. However, by a change of array parameters, the same system also can be poised near an emergent Andronov-Hopf bifurcation and thereby function as a frequency-selective detector.
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Affiliation(s)
- Seung Ji
- Department of Physical Science, Los Angeles Mission College, Sylmar, California, USA
| | - Dolores Bozovic
- Department of Physics & Astronomy, University of California, Los Angeles, California, USA and California NanoSystems Institute, University of California, Los Angeles, California, USA
| | - Robijn Bruinsma
- Department of Physics, University of California, Los Angeles, California, USA and Department of Chemistry and Biochemistry, University of California, Los Angeles, California, USA
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Jörg DJ. Stochastic Kuramoto oscillators with discrete phase states. Phys Rev E 2017; 96:032201. [PMID: 29346898 DOI: 10.1103/physreve.96.032201] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2017] [Indexed: 11/07/2022]
Abstract
We present a generalization of the Kuramoto phase oscillator model in which phases advance in discrete phase increments through Poisson processes, rendering both intrinsic oscillations and coupling inherently stochastic. We study the effects of phase discretization on the synchronization and precision properties of the coupled system both analytically and numerically. Remarkably, many key observables such as the steady-state synchrony and the quality of oscillations show distinct extrema while converging to the classical Kuramoto model in the limit of a continuous phase. The phase-discretized model provides a general framework for coupled oscillations in a Markov chain setting.
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Affiliation(s)
- David J Jörg
- Theory of Condensed Matter Group, Cavendish Laboratory, University of Cambridge, JJ Thomson Avenue, Cambridge CB3 0HE, United Kingdom and Wellcome Trust/Cancer Research UK Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, United Kingdom
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Salvi JD, Ó Maoiléidigh D, Hudspeth AJ. Identification of Bifurcations from Observations of Noisy Biological Oscillators. Biophys J 2017; 111:798-812. [PMID: 27558723 PMCID: PMC5002087 DOI: 10.1016/j.bpj.2016.07.027] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2016] [Revised: 07/20/2016] [Accepted: 07/22/2016] [Indexed: 01/06/2023] Open
Abstract
Hair bundles are biological oscillators that actively transduce mechanical stimuli into electrical signals in the auditory, vestibular, and lateral-line systems of vertebrates. A bundle’s function can be explained in part by its operation near a particular type of bifurcation, a qualitative change in behavior. By operating near different varieties of bifurcation, the bundle responds best to disparate classes of stimuli. We show how to determine the identity of and proximity to distinct bifurcations despite the presence of substantial environmental noise. Using an improved mechanical-load clamp to coerce a hair bundle to traverse different bifurcations, we find that a bundle operates within at least two functional regimes. When coupled to a high-stiffness load, a bundle functions near a supercritical Hopf bifurcation, in which case it responds best to sinusoidal stimuli such as those detected by an auditory organ. When the load stiffness is low, a bundle instead resides close to a subcritical Hopf bifurcation and achieves a graded frequency response—a continuous change in the rate, but not the amplitude, of spiking in response to changes in the offset force—a behavior that is useful in a vestibular organ. The mechanical load in vivo might therefore control a hair bundle’s responsiveness for effective operation in a particular receptor organ. Our results provide direct experimental evidence for the existence of distinct bifurcations associated with a noisy biological oscillator, and demonstrate a general strategy for bifurcation analysis based on observations of any noisy system.
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Affiliation(s)
- Joshua D Salvi
- Laboratory of Sensory Neuroscience, The Rockefeller University, New York, New York
| | | | - A J Hudspeth
- Laboratory of Sensory Neuroscience, The Rockefeller University, New York, New York; Howard Hughes Medical Institute, The Rockefeller University, New York, New York.
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Levy M, Molzon A, Lee JH, Kim JW, Cheon J, Bozovic D. High-order synchronization of hair cell bundles. Sci Rep 2016; 6:39116. [PMID: 27974743 PMCID: PMC5156917 DOI: 10.1038/srep39116] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2016] [Accepted: 11/17/2016] [Indexed: 11/09/2022] Open
Abstract
Auditory and vestibular hair cell bundles exhibit active mechanical oscillations at natural frequencies that are typically lower than the detection range of the corresponding end organs. We explore how these noisy nonlinear oscillators mode-lock to frequencies higher than their internal clocks. A nanomagnetic technique is used to stimulate the bundles without an imposed mechanical load. The evoked response shows regimes of high-order mode-locking. Exploring a broad range of stimulus frequencies and intensities, we observe regions of high-order synchronization, analogous to Arnold Tongues in dynamical systems literature. Significant areas of overlap occur between synchronization regimes, with the bundle intermittently flickering between different winding numbers. We demonstrate how an ensemble of these noisy spontaneous oscillators could be entrained to efficiently detect signals significantly above the characteristic frequencies of the individual cells.
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Affiliation(s)
- Michael Levy
- Department of Physics and Astronomy, California NanoSystems Institute, University of California, Los Angeles, California 90095, United States
| | - Adrian Molzon
- Department of Physics and Astronomy, California NanoSystems Institute, University of California, Los Angeles, California 90095, United States
| | - Jae-Hyun Lee
- Center for Nanomedicine, Institute for Basic Science (IBS), Seoul 03722, Republic of Korea.,Yonsei-IBS Institute, Yonsei University, Seoul 03722, Republic of Korea.,Department of Chemistry, Yonsei University, Seoul 03722, Republic of Korea
| | - Ji-Wook Kim
- Center for Nanomedicine, Institute for Basic Science (IBS), Seoul 03722, Republic of Korea.,Yonsei-IBS Institute, Yonsei University, Seoul 03722, Republic of Korea.,Department of Chemistry, Yonsei University, Seoul 03722, Republic of Korea
| | - Jinwoo Cheon
- Center for Nanomedicine, Institute for Basic Science (IBS), Seoul 03722, Republic of Korea.,Yonsei-IBS Institute, Yonsei University, Seoul 03722, Republic of Korea.,Department of Chemistry, Yonsei University, Seoul 03722, Republic of Korea
| | - Dolores Bozovic
- Department of Physics and Astronomy, California NanoSystems Institute, University of California, Los Angeles, California 90095, United States
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Roongthumskul Y, Bozovic D. Mechanical amplification exhibited by quiescent saccular hair bundles. Biophys J 2015; 108:53-61. [PMID: 25564852 PMCID: PMC4286608 DOI: 10.1016/j.bpj.2014.11.009] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2014] [Revised: 11/04/2014] [Accepted: 11/06/2014] [Indexed: 12/02/2022] Open
Abstract
Spontaneous oscillations exhibited by free-standing hair bundles from the Bullfrog sacculus suggest the existence of an active process that might underlie the exquisite sensitivity of the sacculus to mechanical stimulation. However, this spontaneous activity is suppressed by coupling to an overlying membrane, which applies a large mechanical load on the bundle. How a quiescent hair bundle utilizes its active process is still unknown. We studied the dynamics of motion of individual hair bundles under different offsets in the bundle position, and observed the occurrence of spikes in hair-bundle motion, associated with the generation of active work. These mechanical spikes can be evoked by a sinusoidal stimulus, leading to an amplified movement of the bundle with respect to the passive response. Amplitude gain reached as high as 100-fold at small stimulus amplitudes. Amplification of motion decreased with increasing amplitude of stimulation, ceasing at ∼6–12 pN stimuli. Results from numerical simulations suggest that the adaptation process, mediated by myosin 1c, is not required for the production of mechanical spikes.
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Affiliation(s)
- Yuttana Roongthumskul
- Department of Physics and Astronomy, University of California, Los Angeles, Los Angeles, California
| | - Dolores Bozovic
- Department of Physics and Astronomy, University of California, Los Angeles, Los Angeles, California; California NanoSystems Institute, University of California, Los Angeles, Los Angeles, California.
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Jülicher F. Theme Issue in memory of Tom Duke. Interface Focus 2014. [DOI: 10.1098/rsfs.2014.0072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- Frank Jülicher
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzerstrasse 38, Dresden 01187, Germany
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