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Alvarez P, El Mouss M, Calka M, Belme A, Berillon G, Brige P, Payan Y, Perrier P, Vialet A. Predicting primate tongue morphology based on geometrical skull matching. A first step towards an application on fossil hominins. PLoS Comput Biol 2024; 20:e1011808. [PMID: 38252664 PMCID: PMC10833839 DOI: 10.1371/journal.pcbi.1011808] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 02/01/2024] [Accepted: 01/08/2024] [Indexed: 01/24/2024] Open
Abstract
As part of a long-term research project aiming at generating a biomechanical model of a fossil human tongue from a carefully designed 3D Finite Element mesh of a living human tongue, we present a computer-based method that optimally registers 3D CT images of the head and neck of the living human into similar images of another primate. We quantitatively evaluate the method on a baboon. The method generates a geometric deformation field which is used to build up a 3D Finite Element mesh of the baboon tongue. In order to assess the method's ability to generate a realistic tongue from bony structure information alone, as would be the case for fossil humans, its performance is evaluated and compared under two conditions in which different anatomical information is available: (1) combined information from soft-tissue and bony structures; (2) information from bony structures alone. An Uncertainty Quantification method is used to evaluate the sensitivity of the transformation to two crucial parameters, namely the resolution of the transformation grid and the weight of a smoothness constraint applied to the transformation, and to determine the best possible meshes. In both conditions the baboon tongue morphology is realistically predicted, evidencing that bony structures alone provide enough relevant information to generate soft tissue.
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Affiliation(s)
- Pablo Alvarez
- Sorbonne Université, Institut des Sciences du Calcul et des Données, Paris, France
- Univ. Grenoble Alpes, CNRS, Grenoble INP, TIMC, Grenoble, France
| | - Marouane El Mouss
- Sorbonne Université, Institut des Sciences du Calcul et des Données, Paris, France
| | - Maxime Calka
- Sorbonne Université, Institut des Sciences du Calcul et des Données, Paris, France
| | - Anca Belme
- Sorbonne Université, Institut des Sciences du Calcul et des Données, Paris, France
- Sorbonne Université, Institute Jean Le Rond d’Alembert, UMR 7190, Paris, France
| | - Gilles Berillon
- Muséum national d’Histoire naturelle, UMR 7194 - Histoire naturelle de l’Homme préhistorique, Paris, France
| | - Pauline Brige
- Laboratoire d’Imagerie Interventionnelle Expérimentale, CERIMED, Marseille, France
| | - Yohan Payan
- Univ. Grenoble Alpes, CNRS, Grenoble INP, TIMC, Grenoble, France
| | - Pascal Perrier
- Univ. Grenoble Alpes, CNRS, Grenoble INP, GIPSA-lab, Grenoble, France
| | - Amélie Vialet
- Sorbonne Université, Institut des Sciences du Calcul et des Données, Paris, France
- Muséum national d’Histoire naturelle, UMR 7194 - Histoire naturelle de l’Homme préhistorique, Paris, France
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Bruner E, Beaudet A. The brain of Homo habilis: Three decades of paleoneurology. J Hum Evol 2023; 174:103281. [PMID: 36455402 DOI: 10.1016/j.jhevol.2022.103281] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Revised: 10/14/2022] [Accepted: 10/14/2022] [Indexed: 11/29/2022]
Abstract
In 1987, Phillip Tobias published a comprehensive anatomical analysis of the endocasts attributed to Homo habilis, discussing issues dealing with brain size, sulcal patterns, and vascular traces. He suggested that the neuroanatomy of this species evidenced a clear change toward many cerebral traits associated with our genus, mostly when concerning the morphology of the frontal and parietal cortex. After more than 30 years, the fossil record associated with this taxon has not grown that much, but we have much more information on cranial and brain biology, and we are using a larger array of digital methods to investigate the paleoneurological variation observed in the human genus. Brain volume, the size of the frontal lobe, or the gross hemispheric asymmetries are still relevant issues, but they are considered to be less central than before. More attention is instead being paid to the cortical organization, the relationships with the cranial architecture, and the influence of molecular or ecological factors. Although the field of paleoneurology can currently count on a larger range of tools and principles, there is still a general lack of anatomical information on many endocranial traits. This aspect is probably crucial for the agenda of paleoneurology. More importantly, the whole science is undergoing a delicate change, because of the growing influence of the social environment. In this sense, the disciplines working with fossils (and, in particular, with brain evolution) should take particular care to maintain a healthy professional situation, avoiding an excess of speculation and overstatement.
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Affiliation(s)
- Emiliano Bruner
- Centro Nacional de Investigación sobre la Evolución Humana, Paseo Sierra de Atapuerca 3, 09002 Burgos, Spain.
| | - Amélie Beaudet
- University of Cambridge, Henry Wellcome Building, Fitzwilliam St, Cambridge CB2 1QH, UK; School of Geography, Archaeology and Environmental Studies, University of the Witwatersrand, Private Bag 3, WITS 2050, South Africa; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Carrer de l'Escola Industrial, 23, 08201 Sabadell, Cerdanyola del Vallès, Barcelona, Spain
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Penar W, Magiera A, Klocek C. Applications of bioacoustics in animal ecology. ECOLOGICAL COMPLEXITY 2020. [DOI: 10.1016/j.ecocom.2020.100847] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Boë LJ, Sawallis TR, Fagot J, Badin P, Barbier G, Captier G, Ménard L, Heim JL, Schwartz JL. Which way to the dawn of speech?: Reanalyzing half a century of debates and data in light of speech science. SCIENCE ADVANCES 2019; 5:eaaw3916. [PMID: 32076631 PMCID: PMC7000245 DOI: 10.1126/sciadv.aaw3916] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/16/2018] [Accepted: 10/10/2019] [Indexed: 06/10/2023]
Abstract
Recent articles on primate articulatory abilities are revolutionary regarding speech emergence, a crucial aspect of language evolution, by revealing a human-like system of proto-vowels in nonhuman primates and implicitly throughout our hominid ancestry. This article presents both a schematic history and the state of the art in primate vocalization research and its importance for speech emergence. Recent speech research advances allow more incisive comparison of phylogeny and ontogeny and also an illuminating reinterpretation of vintage primate vocalization data. This review produces three major findings. First, even among primates, laryngeal descent is not uniquely human. Second, laryngeal descent is not required to produce contrasting formant patterns in vocalizations. Third, living nonhuman primates produce vocalizations with contrasting formant patterns. Thus, evidence now overwhelmingly refutes the long-standing laryngeal descent theory, which pushes back "the dawn of speech" beyond ~200 ka ago to over ~20 Ma ago, a difference of two orders of magnitude.
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Affiliation(s)
- Louis-Jean Boë
- Université Grenoble Alpes, CNRS, Grenoble INP, Institute of Engineering Univ. Grenoble Alpes, GIPSA-lab, Grenoble, France
| | | | - Joël Fagot
- Brain and Language Research Institute, Aix-Marseille University, Aix-en-Provence, France
- Cognitive Psychology Laboratory, Centre National de la Recherche Scientifique and Aix-Marseille University, Marseille, France
| | - Pierre Badin
- Université Grenoble Alpes, CNRS, Grenoble INP, Institute of Engineering Univ. Grenoble Alpes, GIPSA-lab, Grenoble, France
| | - Guillaume Barbier
- Université Grenoble Alpes, CNRS, Grenoble INP, Institute of Engineering Univ. Grenoble Alpes, GIPSA-lab, Grenoble, France
- School of Speech Pathology and Audiology, Université de Montréal, Montréal, Québec, Canada
| | | | - Lucie Ménard
- Laboratoire de Phonétique, Université du Québec à Montréal, Montréal, Québec, Canada
- Center for Research on Brain, Language, and Music, Montréal, Québec, Canada
| | - Jean-Louis Heim
- Muséum National d'Histoire Naturelle, Paris, France
- Institut de Paléontologie Humaine, Paris, France
| | - Jean-Luc Schwartz
- Université Grenoble Alpes, CNRS, Grenoble INP, Institute of Engineering Univ. Grenoble Alpes, GIPSA-lab, Grenoble, France
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Sherwood CC, Bradley BJ. Brain Evolution: Mapping the Inner Neandertal. Curr Biol 2019; 29:R95-R97. [DOI: 10.1016/j.cub.2018.12.024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Triplet-Based Codon Organization Optimizes the Impact of Synonymous Mutation on Nucleic Acid Molecular Dynamics. J Mol Evol 2018; 86:91-102. [PMID: 29344693 PMCID: PMC5846835 DOI: 10.1007/s00239-018-9828-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2017] [Accepted: 01/06/2018] [Indexed: 11/22/2022]
Abstract
Since the elucidation of the genetic code almost 50 years ago, many nonrandom aspects of its codon organization remain only partly resolved. Here, we investigate the recent hypothesis of ‘dual-use’ codons which proposes that in addition to allowing adjustment of codon optimization to tRNA abundance, the degeneracy in the triplet-based genetic code also multiplexes information regarding DNA’s helical shape and protein-binding dynamics while avoiding interference with other protein-level characteristics determined by amino acid properties. How such structural optimization of the code within eukaryotic chromatin could have arisen from an RNA world is a mystery, but would imply some preadaptation in an RNA context. We analyzed synonymous (protein-silent) and nonsynonymous (protein-altering) mutational impacts on molecular dynamics in 13823 identically degenerate alternative codon reorganizations, defined by codon transitions in 7680 GPU-accelerated molecular dynamic simulations of implicitly and explicitly solvated double-stranded aRNA and bDNA structures. When compared to all possible alternative codon assignments, the standard genetic code minimized the impact of synonymous mutations on the random atomic fluctuations and correlations of carbon backbone vector trajectories while facilitating the specific movements that contribute to DNA polymer flexibility. This trend was notably stronger in the context of RNA supporting the idea that dual-use codon optimization and informational multiplexing in DNA resulted from the preadaptation of the RNA duplex to resist changes to thermostability. The nonrandom and divergent molecular dynamics of synonymous mutations also imply that the triplet-based code may have resulted from adaptive functional expansion enabling a primordial doublet code to multiplex gene regulatory information via the shape and charge of the minor groove.
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Abstract
Recent studies of the evolution of religion have revealed the cognitive underpinnings of belief in supernatural agents, the role of ritual in promoting cooperation, and the contribution of morally punishing high gods to the growth and stabilization of human society. The universality of religion across human society points to a deep evolutionary past. However, specific traits of nascent religiosity, and the sequence in which they emerged, have remained unknown. Here we reconstruct the evolution of religious beliefs and behaviors in early modern humans using a global sample of hunter-gatherers and seven traits describing hunter-gatherer religiosity: animism, belief in an afterlife, shamanism, ancestor worship, high gods, and worship of ancestors or high gods who are active in human affairs. We reconstruct ancestral character states using a time-calibrated supertree based on published phylogenetic trees and linguistic classification and then test for correlated evolution between the characters and for the direction of cultural change. Results indicate that the oldest trait of religion, present in the most recent common ancestor of present-day hunter-gatherers, was animism, in agreement with long-standing beliefs about the fundamental role of this trait. Belief in an afterlife emerged, followed by shamanism and ancestor worship. Ancestor spirits or high gods who are active in human affairs were absent in early humans, suggesting a deep history for the egalitarian nature of hunter-gatherer societies. There is a significant positive relationship between most characters investigated, but the trait “high gods” stands apart, suggesting that belief in a single creator deity can emerge in a society regardless of other aspects of its religion.
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Fitch WT, de Boer B, Mathur N, Ghazanfar AA. Monkey vocal tracts are speech-ready. SCIENCE ADVANCES 2016; 2:e1600723. [PMID: 27957536 PMCID: PMC5148209 DOI: 10.1126/sciadv.1600723] [Citation(s) in RCA: 112] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2016] [Accepted: 11/08/2016] [Indexed: 05/21/2023]
Abstract
For four decades, the inability of nonhuman primates to produce human speech sounds has been claimed to stem from limitations in their vocal tract anatomy, a conclusion based on plaster casts made from the vocal tract of a monkey cadaver. We used x-ray videos to quantify vocal tract dynamics in living macaques during vocalization, facial displays, and feeding. We demonstrate that the macaque vocal tract could easily produce an adequate range of speech sounds to support spoken language, showing that previous techniques based on postmortem samples drastically underestimated primate vocal capabilities. Our findings imply that the evolution of human speech capabilities required neural changes rather than modifications of vocal anatomy. Macaques have a speech-ready vocal tract but lack a speech-ready brain to control it.
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Affiliation(s)
- W. Tecumseh Fitch
- Department of Cognitive Biology, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria
- Haidlhof Research Station, University of Vienna/University of Veterinary Medicine Vienna, Bad Vöslau, Austria
- Corresponding author. (W.T.F.); (A.A.G.)
| | - Bart de Boer
- Artificial Intelligence Laboratory, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium
| | - Neil Mathur
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ 08544, USA
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA
| | - Asif A. Ghazanfar
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ 08544, USA
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA
- Department of Psychology, Princeton University, Princeton, NJ 08544, USA
- Corresponding author. (W.T.F.); (A.A.G.)
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Steele J, Clegg M, Martelli S. Comparative morphology of the hominin and African ape hyoid bone, a possible marker of the evolution of speech. Hum Biol 2015; 85:639-72. [PMID: 25078953 DOI: 10.3378/027.085.0501] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/30/2013] [Indexed: 11/05/2022]
Abstract
This study examines the morphology of the hyoid in three closely related species, Homo sapiens, Pan troglodytes, and Gorilla gorilla. Differences and similarities between the hyoids of these species are characterized and used to interpret the morphology and affi nities of the Dikika A. afarensis, Kebara 2 Neanderthal, and other fossil hominin hyoid bones. Humans and African apes are found to have distinct hyoid morphologies. In humans the maximum width across the distal tips of the articulated greater horns is usually slightly greater than the maximum length (distal greater horn tip to most anterior point of the hyoid body in the midline). A different pattern is usually found in the African ape hyoids, which have much greater maximum lengths. In humans, the hyoid body is also much more anteroposteriorly shallow in proportion to its height and width, and this is true for all age classes. The Dikika australopithecine hyoid body proportions are chimpanzeelike. A discriminant function analysis, using a larger subadult sample from the three extant species than that reported by Alemseged et al. (2006), confirms this finding. The Kebara hyoid dimensions (body alone, and articulated body and greater horns) are almost all within the observed range for human hyoids. Discriminant functions clearly distinguish human from African ape hyoids and classify the Kebara 2 hyoid as human (confirming the finding of Arensburg et al. 1989). Our virtual dissection of a chimpanzee air sac system shows its subhyoid extension into the dorsal hyoid body. Following Alemseged et al. (2006), the expanded bulla characteristic of the African ape and australopithecine hyoid body is therefore interpreted as refl ecting the presence of such a laryngeal air sac extension. Its absence in the human, Neanderthal, and H. heidelbergensis (Atapuerca SH) hyoids implicates the loss of the laryngeal air sacs as a derived Neanderthal and modern human trait, which evolved no later than the middle Pleistocene. If, as has been argued by de Boer (2012), the loss of the air sac helped to enhance perceptual discrimination of speech sounds, then this derived hyoid morphology can be added to the list of fossil markers of the capacity for speech.
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Rodríguez-Vázquez JF, Verdugo-López S, Abe H, Murakami G. The Origin of the Variations of the Hyoid Apparatus in Human. Anat Rec (Hoboken) 2015; 298:1395-407. [PMID: 25926274 DOI: 10.1002/ar.23166] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2014] [Revised: 02/09/2015] [Accepted: 03/18/2015] [Indexed: 11/09/2022]
Abstract
Currently, theories based on acquired calcification of the stylohyoid ligament are believed to be a pathogenesis of syndromes associated with the hyoid apparatus (HA) and its variations. We studied the development of the HA from Reichert´s cartilage using serial sections of 25 human embryos and 45 fetuses. We ensured a fact that, at the initial stage, the HA appeared as two independent cartilage segments, that is, the cranial or styloid segment and the caudal or hyoid segment of Reichert's cartilage, those are connected by a mesenchymal structure. However, between 8 and 10 weeks of development, the mesenchymal connection was lost. We hypothesize that this disconnection is likely to be one of the major factors to make a descent of the hyoid bone in evolution. The stylohyoid ligament was not observed. The variations of the HA, should be considered variations of the development of Reicherts cartilage. If these variations are maintained in the adult, are likely to explain a major symptom associated with Eagle's syndrome.
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Affiliation(s)
- José Francisco Rodríguez-Vázquez
- Departament of Anatomy and Human Embryology, Institute of Embryology, Faculty of Medicine, Complutense University, Madrid, Spain
| | - Samuel Verdugo-López
- Departament of Anatomy and Human Embryology, Institute of Embryology, Faculty of Medicine, Complutense University, Madrid, Spain
| | - Hiroshi Abe
- Department of Anatomy, Akita University School of Medicine, Akita, Japan
| | - Gen Murakami
- Division of Internal Medicine, Iwamizawa Kojin-Kai Hospital, Iwamizawa, Japan
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Neubauer S. Endocasts: possibilities and limitations for the interpretation of human brain evolution. BRAIN, BEHAVIOR AND EVOLUTION 2014; 84:117-34. [PMID: 25247826 DOI: 10.1159/000365276] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
Brains are not preserved in the fossil record but endocranial casts are. These are casts of the internal bony braincase, revealing approximate brain size and shape, and they are also informative about brain surface morphology. Endocasts are the only direct evidence of human brain evolution, but they provide only limited data ('paleoneurology'). This review discusses some new fossil endocasts and recent methodological advances that have allowed novel analyses of old endocasts, leading to intriguing findings and hypotheses. The interpretation of paleoneurological data always relies on comparative information from living species whose brains and behavior can be directly investigated. It is therefore important that future studies attempt to better integrate different approaches. Only then will we be able to gain a better understanding about hominin brain evolution. © 2014 S. Karger AG, Basel.
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Affiliation(s)
- Simon Neubauer
- Department of Human Evolution, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
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Brain mechanisms of acoustic communication in humans and nonhuman primates: An evolutionary perspective. Behav Brain Sci 2014; 37:529-46. [DOI: 10.1017/s0140525x13003099] [Citation(s) in RCA: 147] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
AbstractAny account of “what is special about the human brain” (Passingham 2008) must specify the neural basis of our unique ability to produce speech and delineate how these remarkable motor capabilities could have emerged in our hominin ancestors. Clinical data suggest that the basal ganglia provide a platform for the integration of primate-general mechanisms of acoustic communication with the faculty of articulate speech in humans. Furthermore, neurobiological and paleoanthropological data point at a two-stage model of the phylogenetic evolution of this crucial prerequisite of spoken language: (i) monosynaptic refinement of the projections of motor cortex to the brainstem nuclei that steer laryngeal muscles, presumably, as part of a “phylogenetic trend” associated with increasing brain size during hominin evolution; (ii) subsequent vocal-laryngeal elaboration of cortico-basal ganglia circuitries, driven by human-specificFOXP2mutations.;>This concept implies vocal continuity of spoken language evolution at the motor level, elucidating the deep entrenchment of articulate speech into a “nonverbal matrix” (Ingold 1994), which is not accounted for by gestural-origin theories. Moreover, it provides a solution to the question for the adaptive value of the “first word” (Bickerton 2009) since even the earliest and most simple verbal utterances must have increased the versatility of vocal displays afforded by the preceding elaboration of monosynaptic corticobulbar tracts, giving rise to enhanced social cooperation and prestige. At the ontogenetic level, the proposed model assumes age-dependent interactions between the basal ganglia and their cortical targets, similar to vocal learning in some songbirds. In this view, the emergence of articulate speech builds on the “renaissance” of an ancient organizational principle and, hence, may represent an example of “evolutionary tinkering” (Jacob 1977).
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Steele J, Ferrari PF, Fogassi L. From action to language: comparative perspectives on primate tool use, gesture and the evolution of human language. Philos Trans R Soc Lond B Biol Sci 2012; 367:4-9. [PMID: 22106422 DOI: 10.1098/rstb.2011.0295] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
The papers in this Special Issue examine tool use and manual gestures in primates as a window on the evolution of the human capacity for language. Neurophysiological research has supported the hypothesis of a close association between some aspects of human action organization and of language representation, in both phonology and semantics. Tool use provides an excellent experimental context to investigate analogies between action organization and linguistic syntax. Contributors report and contextualize experimental evidence from monkeys, great apes, humans and fossil hominins, and consider the nature and the extent of overlaps between the neural representations of tool use, manual gestures and linguistic processes.
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Affiliation(s)
- James Steele
- AHRC Centre for the Evolution of Cultural Diversity, Institute of Archaeology, University College London, 31-34 Gordon Square, London WC1H 0PY, UK.
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