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Camacho M, Medina C, Rodríguez-Navarro DN, Temprano Vera F. Biodiversity of rhizobia present in plant nodules of Biserrula pelecinus across Southwest Spain. Syst Appl Microbiol 2019; 42:415-421. [PMID: 30952451 DOI: 10.1016/j.syapm.2019.03.005] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2018] [Revised: 03/14/2019] [Accepted: 03/18/2019] [Indexed: 11/29/2022]
Abstract
Biodiversity studies of native Mesorhizobium spp. strains able to nodulate the annual herbaceous legume Biserrula pelecinus L. in soils from Southwest Spain have been carried out. One or two isolates per plant, 30 in total, were randomly selected for further characterization. There was no association between the presence of mesorhizobia nodulating-B. pelecinus and the chemical or textural properties of the soils. The isolates were tested for their symbiotic effectiveness on this forage legume under greenhouse conditions and characterized on the basis of physiological parameters: carbon source utilisation (API 50CH), 16S rRNA sequencing and ERIC-PCR, lipopolysaccharide, protein and plasmid profiles. Our results show that in spite of the great diversity found among the native isolates, most of them belong to the genus Mesorhizobium, the exception being strain B24 which sequence matches 97.52% with Neorhizobium huautlense; this is the first description of a Neorhizobium strain effectively nodulating-biserrula plants. Results of a field trial indicated that some of these isolates could be recommended as inoculants for this legume. B24=DSM 28743=CECT 8815; ENA (HF955513) 16S rRNA sequences of isolates B13, B18, B26, B30 and B1 are deposited at ENA under numbers LS999402 to LS999406, respectively.
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Affiliation(s)
- María Camacho
- IFAPA Centro Las Torres Tomejil, Ctra Sevilla-Cazalla Km 12, 2. 41200 Seville, Spain.
| | - Carlos Medina
- Department of Microbiology, Faculty of Biology, University of Seville, Avda. Reina Mercedes 6, 41012 Seville, Spain
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Andrews M, Andrews ME. Specificity in Legume-Rhizobia Symbioses. Int J Mol Sci 2017; 18:E705. [PMID: 28346361 PMCID: PMC5412291 DOI: 10.3390/ijms18040705] [Citation(s) in RCA: 136] [Impact Index Per Article: 19.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2017] [Revised: 03/19/2017] [Accepted: 03/21/2017] [Indexed: 11/24/2022] Open
Abstract
Most species in the Leguminosae (legume family) can fix atmospheric nitrogen (N₂) via symbiotic bacteria (rhizobia) in root nodules. Here, the literature on legume-rhizobia symbioses in field soils was reviewed and genotypically characterised rhizobia related to the taxonomy of the legumes from which they were isolated. The Leguminosae was divided into three sub-families, the Caesalpinioideae, Mimosoideae and Papilionoideae. Bradyrhizobium spp. were the exclusive rhizobial symbionts of species in the Caesalpinioideae, but data are limited. Generally, a range of rhizobia genera nodulated legume species across the two Mimosoideae tribes Ingeae and Mimoseae, but Mimosa spp. show specificity towards Burkholderia in central and southern Brazil, Rhizobium/Ensifer in central Mexico and Cupriavidus in southern Uruguay. These specific symbioses are likely to be at least in part related to the relative occurrence of the potential symbionts in soils of the different regions. Generally, Papilionoideae species were promiscuous in relation to rhizobial symbionts, but specificity for rhizobial genus appears to hold at the tribe level for the Fabeae (Rhizobium), the genus level for Cytisus (Bradyrhizobium), Lupinus (Bradyrhizobium) and the New Zealand native Sophora spp. (Mesorhizobium) and species level for Cicer arietinum (Mesorhizobium), Listia bainesii (Methylobacterium) and Listia angolensis (Microvirga). Specificity for rhizobial species/symbiovar appears to hold for Galega officinalis (Neorhizobium galegeae sv. officinalis), Galega orientalis (Neorhizobium galegeae sv. orientalis), Hedysarum coronarium (Rhizobium sullae), Medicago laciniata (Ensifer meliloti sv. medicaginis), Medicago rigiduloides (Ensifer meliloti sv. rigiduloides) and Trifolium ambiguum (Rhizobium leguminosarum sv. trifolii). Lateral gene transfer of specific symbiosis genes within rhizobial genera is an important mechanism allowing legumes to form symbioses with rhizobia adapted to particular soils. Strain-specific legume rhizobia symbioses can develop in particular habitats.
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Affiliation(s)
- Mitchell Andrews
- Faculty of Agriculture and Life Sciences, Lincoln University, PO Box 84, Lincoln 7647, New Zealand.
| | - Morag E Andrews
- Faculty of Agriculture and Life Sciences, Lincoln University, PO Box 84, Lincoln 7647, New Zealand.
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Complete Genome Sequence of Mesorhizobium ciceri bv. biserrulae Strain WSM1284, an Efficient Nitrogen-Fixing Microsymbiont of the Pasture Legume Biserrula pelecinus. GENOME ANNOUNCEMENTS 2016; 4:4/3/e00514-16. [PMID: 27284134 PMCID: PMC4901225 DOI: 10.1128/genomea.00514-16] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
We report the complete genome sequence of Mesorhizobium ciceri bv. biserrulae strain WSM1284, a nitrogen-fixing microsymbiont of the pasture legume Biserrula pelecinus The genome consists of 6.88 Mb distributed between a single chromosome (6.33 Mb) and a single plasmid (0.55 Mb).
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Nandasena KG, O'Hara GW, Tiwari RP, Willems A, Howieson JG. Mesorhizobium australicum sp. nov. and Mesorhizobium opportunistum sp. nov., isolated from Biserrula pelecinus L. in Australia. Int J Syst Evol Microbiol 2009; 59:2140-7. [DOI: 10.1099/ijs.0.005728-0] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
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Muresu R, Polone E, Sulas L, Baldan B, Tondello A, Delogu G, Cappuccinelli P, Alberghini S, Benhizia Y, Benhizia H, Benguedouar A, Mori B, Calamassi R, Dazzo FB, Squartini A. Coexistence of predominantly nonculturable rhizobia with diverse, endophytic bacterial taxa within nodules of wild legumes. FEMS Microbiol Ecol 2008; 63:383-400. [DOI: 10.1111/j.1574-6941.2007.00424.x] [Citation(s) in RCA: 142] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
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Nandasena KG, O'Hara GW, Tiwari RP, Sezmiş E, Howieson JG. In situ lateral transfer of symbiosis islands results in rapid evolution of diverse competitive strains of mesorhizobia suboptimal in symbiotic nitrogen fixation on the pasture legume Biserrula pelecinus L. Environ Microbiol 2007; 9:2496-511. [PMID: 17803775 DOI: 10.1111/j.1462-2920.2007.01368.x] [Citation(s) in RCA: 97] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The multi-billion dollar asset attributed to symbiotic nitrogen fixation is often threatened by the nodulation of legumes by rhizobia that are ineffective or poorly effective in N(2) fixation. This study investigated the development of rhizobial diversity for the pasture legume Biserrula pelecinus L., 6 years after its introduction, and inoculation with Mesorhizobium ciceri bv. biserrulae strain WSM1271, to Western Australia. Molecular fingerprinting of 88 nodule isolates indicated seven were distinctive. Two of these were ineffective while five were poorly effective in N(2) fixation on B. pelecinus. Three novel isolates had wider host ranges for nodulation than WSM1271, and four had distinct carbon utilization patterns. Novel isolates were identified as Mesorhizobium sp. using 16S rRNA, dnaK and GSII phylogenies. In a second study, a large number of nodules were collected from commercially grown B. pelecinus from a broader geographical area. These plants were originally inoculated with M. c bv. biserrulae WSM1497 5-6 years prior to isolation of strains for this study. Nearly 50% of isolates from these nodules had distinct molecular fingerprints. At two sites diverse strains dominated nodule occupancy indicating recently evolved strains are highly competitive. All isolates tested were less effective and six were ineffective in N(2) fixation. Twelve randomly selected diverse isolates clustered together, based on dnaK sequences, within Mesorhizobium and distantly to M. c bv. biserrulae. All 12 had identical sequences for the symbiosis island insertion region with WSM1497. This study shows the rapid evolution of competitive, yet suboptimal strains for N(2) fixation on B. pelecinus following the lateral transfer of a symbiosis island from inoculants to other soil bacteria.
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Nandasena KG, O'Hara GW, Tiwari RP, Willlems A, Howieson JG. Mesorhizobium ciceri biovar biserrulae, a novel biovar nodulating the pasture legume Biserrula pelecinus L. Int J Syst Evol Microbiol 2007; 57:1041-1045. [PMID: 17473255 DOI: 10.1099/ijs.0.64891-0] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Biserrula pelecinus L. is a pasture legume species that forms a highly specific nitrogen-fixing symbiotic interaction with a group of bacteria that belong to Mesorhizobium. These mesorhizobia have >98.8 % sequence similarity to Mesorhizobium ciceri and Mesorhizobium loti for the 16S rRNA gene (1440 bp) and >99.3 % sequence similarity to M. ciceri for the dnaK gene (300 bp), and strain WSM1271 has 100 % sequence similarity to M. ciceri for GSII (600 bp). Strain WSM1271 had 85 % relatedness to M. ciceri LMG 14989(T) and 50 % relatedness to M. loti LMG 6125(T) when DNA-DNA hybridization was performed. WSM1271 also had a similar cellular fatty acid profile to M. ciceri. These results are strong evidence that the Biserrula mesorhizobia and M. ciceri belong to the same group of bacteria. Significant differences were revealed between the Biserrula mesorhizobia and M. ciceri in growth conditions, antibiotic resistance and carbon source utilization. The G+C content of the DNA of WSM1271 was 62.7 mol%, compared to 63-64 mol% for M. ciceri. The Biserrula mesorhizobia contained a plasmid ( approximately 500 bp), but the symbiotic genes were detected on a mobile symbiosis island and considerable variation was present in the symbiotic genes of Biserrula mesorhizobia and M. ciceri. There was <78.6 % sequence similarity for nodA and <66.9 % for nifH between Biserrula mesorhizobia and M. ciceri. Moreover, the Biserrula mesorhizobia did not nodulate the legume host of M. ciceri, Cicer arietinum, and M. ciceri did not nodulate B. pelecinus. These significant differences observed between Biserrula mesorhizobia and M. ciceri warrant the proposal of a novel biovar for Biserrula mesorhizobia within M. ciceri. The name Mesorhizobium ciceri biovar biserrulae is proposed, with strain WSM1271 (=LMG 23838=HAMBI 2942) as the reference strain.
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MESH Headings
- Acyltransferases/genetics
- Alphaproteobacteria/classification
- Alphaproteobacteria/genetics
- Alphaproteobacteria/physiology
- Bacterial Proteins/genetics
- Bacterial Typing Techniques
- Base Composition
- Carbohydrate Metabolism
- DNA, Bacterial/chemistry
- DNA, Bacterial/genetics
- DNA, Ribosomal/chemistry
- DNA, Ribosomal/genetics
- Drug Resistance, Bacterial
- Fabaceae/microbiology
- Fabaceae/physiology
- Fatty Acids/analysis
- Genes, rRNA
- Genomic Islands/genetics
- Molecular Sequence Data
- Nucleic Acid Hybridization
- Oxidoreductases/genetics
- Phylogeny
- Plasmids/genetics
- RNA, Bacterial/genetics
- RNA, Ribosomal, 16S/genetics
- Sequence Analysis, DNA
- Sequence Homology, Nucleic Acid
- Symbiosis/genetics
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Affiliation(s)
- Kemanthi G Nandasena
- Centre for Rhizobium Studies, Murdoch University, Murdoch, Western Australia 6150, Australia
| | - Graham W O'Hara
- Centre for Rhizobium Studies, Murdoch University, Murdoch, Western Australia 6150, Australia
| | - Ravi P Tiwari
- Centre for Rhizobium Studies, Murdoch University, Murdoch, Western Australia 6150, Australia
| | - Anne Willlems
- Laboratory of Microbiology, Faculty of Sciences, Ghent University, B-9000 Ghent, Belgium
| | - John G Howieson
- Centre for Rhizobium Studies, Murdoch University, Murdoch, Western Australia 6150, Australia
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Nandasena KG, O'hara GW, Tiwari RP, Howieson JG. Rapid in situ evolution of nodulating strains for Biserrula pelecinus L. through lateral transfer of a symbiosis island from the original mesorhizobial inoculant. Appl Environ Microbiol 2006; 72:7365-7. [PMID: 16936054 PMCID: PMC1636192 DOI: 10.1128/aem.00889-06] [Citation(s) in RCA: 71] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Diverse rhizobia able to nodulate Biserrula pelecinus evolved following in situ transfer of nodA and nifH from an inoculant to soil bacteria. Transfer of these chromosomal genes and the presence of an identical integrase gene adjacent to a Phe tRNA gene in both the inoculant and recipients indicate that there was lateral transfer of a symbiosis island.
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Affiliation(s)
- Kemanthi G Nandasena
- Centre for Rhizobium Studies, Murdoch University, Murdoch, Perth 6150, Western Australia, Australia.
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Loi A, Howieson JG, Nutt BJ, Carr SJ. A second generation of annual pasture legumes and their potential for inclusion in Mediterranean-type farming systems. ACTA ACUST UNITED AC 2005. [DOI: 10.1071/ea03134] [Citation(s) in RCA: 90] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
A second generation of annual pasture legumes and their root-nodule bacteria has been released to agriculture in Mediterranean-type environments. These new species emanate from selection activity focussed upon ‘alternative legumes’. In 1992, in response to changing constraints upon production, a program was initiated which sought species with different ideotypic traits to the traditional annual medics and clovers used in agriculture in southern Australia. Traits sought in the new species were deeper root systems, improved persistence from higher hardseed levels, acid tolerant symbioses, tolerance to pests and diseases and ease of harvesting with conventional cereal harvesters. Several cultivars of species new to Australian agriculture such as biserrula (Biserrula pelecinus), French serradella (Ornithopus sativus), gland clover (Trifolium glanduliferum) and improved varieties of arrowleaf clover (Trifolium vesiculosum) and yellow serradella (Ornithopus compressus) were developed and have had rapid adoption and impact in southern Australian ley- and phase-farming systems. This paper reviews the importance of ley farming for Australian agriculture, the shortcomings of the traditional medics and clovers and the imperatives for a second generation of annual pasture legume species to be developed. In addition to enhancing ley farming, the commercial availability of a second generation of annual pasture legume species has provided a much needed impetus for the development of more flexible and sustainable farming systems.
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Davies SR, Howieson JG, Yates RJ, Lane PA. Selection and evaluation of root nodule bacteria for Dorycnium spp. ACTA ACUST UNITED AC 2005. [DOI: 10.1071/ea03127] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Dorycnium spp. are perennial legumes that have the ability to produce a source of forage in low fertility soils under low rainfall conditions. The inoculation of Dorycnium spp. is currently with the commercial Lotus corniculatus inoculant SU343, which until now had not been trialed against a range of alternative inoculants for Dorycnium spp. A glasshouse trial in sterile sand culture was conducted with 3 species of Dorycnium spp. along with 6 important pasture legumes to evaluate nitrogen-fixing performance, and host and rhizobia interactions. Several inoculants were selected from this trial to undergo evaluation under Tasmanian field conditions. The dry matter production of Dorycnium spp. in the glasshouse and field indicated that SU343 is a suitable inoculant for this genus. A Tasmanian isolate (WSM2338) was identified as a complimentary strain for the inoculation of Dorycnium spp., however, negative interactions with important pasture legumes require further investigation.
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