Three novel Actinoplanes species isolated by using polyaspartic acid as a water-retaining agent for the enrichment in situ

Three novel actinomycete strains, designated TRM66264-DLM^T, TRM88002^T and TRM88003^T, were isolated by using polyaspartic acid as a water-retaining agent for the enrichment in situ. The 16S rRNA gene sequence and phylogenetic analyses of three strains indicated that they belonged to the genus Actinoplanes. The phylogenetically closest strains of TRM66264-DLM^T, TRM88002^T and TRM88003^T were Actinoplanes bogorensis LIPI11-2-Ac043^T (98.4 %), Actinoplanes abujensis A4029^T (98.0 %) and Actinoplanes ferrugineus IFO15555^T (98.1 %), respectively. The major polar lipids of strains TRM66264-DLM^T and TRM88002^T were phosphatidylethanolamine and disphosphatidylglycerol, while strain TRM88003^T only had phosphatidylethanolamine. The predominant menaquinones of strain TRM66264-DLM^T were identified as MK-9(H₄) and MK-9 (H₆). Strains TRM88002^T and TRM88003^T had MK-9(H₄). The cell-wall peptidoglycan of three strains contained meso-diaminopimelic acid. The whole-cell sugars of strain TRM66264-DLM^T were identified as arabinose, glucose, galactose and xylose. Strains TRM88002^T and TRM88003^T mainly had arabinose and glucose. The DNA G+C content of strains TRM66264-DLM^T, TRM88002^T and TRM88003^T were 70.48, 70.46 and 70.64 mol%, respectively. Genotypic and phenotypic analysis confirmed that all three strains sre new members of the genus Acinoplanes. Therefore, it is proposed that strains TRM66264-DLM^T, TRM88002^T and TRM88003^T represent three novel species of the genus Actinoplanes, for which the names Actinoplanes polyasparticus sp. nov. (type strain TRM66264-DLM^T=CCTCC AA 2021015^T=LMG 32389^T), Actinoplanes hotanensis sp. nov. (type strain TRM88002^T=CCTCC AA 2021036^T=LMG 32621^T) and Actinoplanes aksuensis sp. nov. (type strain TRM88003^T=CCTCC AA 2021037 ^T=LMG 32622^T) are proposed.

Actinoplanes lichenicola sp. nov. and Actinoplanes ovalisporus sp. nov., isolated from lichen in Thailand

Two actinobacteria, designated as strain LDG1-01^T and LDG1-06^T, were isolated from lichen samples collected in Thailand. Results of morphological characterization, chemotaxonomic studies and 16S rRNA gene analysis indicated that both strains were members of the genus Actinoplanes. MK-9(H₄) was found as the major menaquinone. The major fatty acids were anteiso-C_15 : 0, iso-C_15 : 0, iso-C_16 : 0 and anteiso-C_17 : 0. Phosphatidylglycerol, diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylinositol were observed as the polar lipids, but differences in minor unidentified polar lipids were found between the strains. Results of comparative genome analysis based on average nucleotide identity and digital DNA-DNA hybridization calculations revealed that both strains showed values below 95 and 70 %, respectively, from each other and closely related Actinoplanes type strains. Based on data from this polyphasic study, strains LDG1-01^T and LDG1-06^T represent novel species of the genus Actinoplanes. The names proposed are Actinoplanes lichenicola sp. nov. (type strain, LDG1-01^T (=JCM 33066^T=TISTR 2982^T) and Actinoplanes ovalisporus sp. nov. (type strain, LDG1-06^T=JCM 33067^T=TISTR 2983^T).