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Jiang C, Kasai H, Mino S, Romalde JL, Sawabe T. The pan‐genome of Splendidus clade species in the family
Vibrionaceae
: insights into evolution, adaptation, and pathogenicity. Environ Microbiol 2022; 24:4587-4606. [DOI: 10.1111/1462-2920.16209] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2022] [Accepted: 09/13/2022] [Indexed: 11/29/2022]
Affiliation(s)
- Chunqi Jiang
- Laboratory of Microbiology, Faculty of Fisheries Sciences Hokkaido University Hakodate Japan
| | - Hisae Kasai
- Laboratory of Marine Biotechnology and Microbiology, Faculty of Fisheries Sciences Hokkaido University Hakodate Japan
| | - Sayaka Mino
- Laboratory of Microbiology, Faculty of Fisheries Sciences Hokkaido University Hakodate Japan
| | - Jesús L. Romalde
- Departamento de Microbiología y Parasitología, CRETUS & CIBUS‐Facultad de Biología. Universidade de Santiago de Compostela Spain
| | - Tomoo Sawabe
- Laboratory of Microbiology, Faculty of Fisheries Sciences Hokkaido University Hakodate Japan
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Liu Y, Zhu HH. Diaphorobacter polyhydroxybutyrativorans Qiu et al. 2015 is a later heterotypic synonym of Diaphorobacter nitroreducens Khan and Hiraishi 2003. Int J Syst Evol Microbiol 2019; 69:2954-2957. [PMID: 31282854 DOI: 10.1099/ijsem.0.003582] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Comparative analyses of Diaphorobacter polyhydroxybutyrativorans SL-205T and Diaphorobacter nitroreducens NA10BT were conducted for clarifying their taxonomic relationship. The sequences of the 16S rRNA gene and nine housekeeping genes of SL-205T and NA10BT shared high similarities, above 98.8 %. Whole-genomic comparison between the two strains revealed a digital DNA-DNA hybridization estimate of 85.1 % and an average nucleotide identity of 98.3 % that were well above respective recognized thresholds for bacterial species delineation, strongly indicating that they represent the same genomospecies. The metabolic, physiological and chemotaxonomic features of SL-205T were also shown to be congruent with those of NA10BT. Therefore, we conclude that Diaphorobacter polyhydroxybutyrativoransQiu et al. 2015 is a later heterotypic synonym of Diaphorobacter nitroreducens Khan and Hiraishi 2003.
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Affiliation(s)
- Yang Liu
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Open Laboratory of Applied Microbiology, Guangdong Microbial Culture Collection Center (GDMCC), Guangdong Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, PR China
| | - Hong-Hui Zhu
- State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangdong Open Laboratory of Applied Microbiology, Guangdong Microbial Culture Collection Center (GDMCC), Guangdong Institute of Microbiology, Guangdong Academy of Sciences, Guangzhou 510070, PR China
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Poli A, Romano I, Mastascusa V, Buono L, Orlando P, Nicolaus B, Leone L, Hong KW, Chan KG, Goh KM, Pascual J. Vibrio coralliirubri sp. nov., a new species isolated from mucus of red coral (Corallium rubrum) collected at Procida island, Italy. Antonie van Leeuwenhoek 2018; 111:1105-1115. [PMID: 29299771 DOI: 10.1007/s10482-017-1013-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2017] [Accepted: 12/26/2017] [Indexed: 10/18/2022]
Abstract
Strain Corallo1T was isolated from mucus of red coral (Corallium rubrum) at Punta Pizzaco (Procida island, Naples, Italy). It was characterised as a Gram-stain negative, motile, rod-shaped bacterium. Strain Corallo1T was found to show positive responses for cytochrome-c oxidase, catalase, reduction of nitrate and nitrite, β-galactosidase activity and hydrolysis of starch, xylan, peptone, Tween 40, Tween 80 and casein. Strain Corallo1T was found to be mesophilic, neutrophilic to alkalophilic and slightly halophilic. According to analysis of the almost-complete 16S rRNA gene, strain Corallo1T is closely related to Vibrio celticus (100% sequence similarity), Vibrio gigantis (100%), Vibrio crassostreae (99.7%), Vibrio artabrorum (99.7%) and Vibrio pomeroyi (99.6%). MLSA of five housekeeping genes (atpA, pyrH, recA, rpoA and rpoD) was performed to refine the phylogenetic relationships of strain Corallo1T. A draft genome sequence of strain Corallo1T was obtained. The DNA G+C content of this strain was determined to be 44.5 mol %. The major cellular fatty acids of strain Corallo1T are C16:1, n-C16:0 and C18:1, and the major isoprenoid ubiquinone is Q8. ANI indexes, in silico estimations of DDH values and wet lab DDH values demonstrated that strain Corallo1T represents an independent genomospecies. Based on a polyphasic taxonomic characterisation, strain Corallo1T is concluded to represent a novel species of the genus Vibrio, for which the name Vibrio coralliirubri sp. nov. is proposed. The type strain is Corallo1T (= DSM 27495T = CIP 110630T).
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Affiliation(s)
- Annarita Poli
- Consiglio Nazionale delle Ricerche (C.N.R.), Institute of Biomolecular Chemistry (I.C.B.), via Campi Flegrei 34, 80078, Pozzuoli, Naples, Italy
| | - Ida Romano
- Consiglio Nazionale delle Ricerche (C.N.R.), Institute of Biomolecular Chemistry (I.C.B.), via Campi Flegrei 34, 80078, Pozzuoli, Naples, Italy
| | - Vincenza Mastascusa
- Consiglio Nazionale delle Ricerche (C.N.R.), Institute of Biomolecular Chemistry (I.C.B.), via Campi Flegrei 34, 80078, Pozzuoli, Naples, Italy
| | - Lorena Buono
- Consiglio Nazionale delle Ricerche (C.N.R.), Institute of Biomolecular Chemistry (I.C.B.), via Campi Flegrei 34, 80078, Pozzuoli, Naples, Italy
| | - Pierangelo Orlando
- Consiglio Nazionale delle Ricerche (C.N.R.), Institute of Applied Science and Intelligent Systems (I.S.A.S.I.-C.N.R.), via Campi Flegrei 34, 80078, Pozzuoli, Naples, Italy
| | - Barbara Nicolaus
- Consiglio Nazionale delle Ricerche (C.N.R.), Institute of Biomolecular Chemistry (I.C.B.), via Campi Flegrei 34, 80078, Pozzuoli, Naples, Italy
| | - Luigi Leone
- Consiglio Nazionale delle Ricerche (C.N.R.), Institute of Biomolecular Chemistry (I.C.B.), via Campi Flegrei 34, 80078, Pozzuoli, Naples, Italy
| | - Kar Wai Hong
- Division of Genetics and Molecular Biology, Institute of Biological Sciences, Faculty of Science, University of Malaya, 50603, Kuala Lumpur, Malaysia
| | - Kok-Gan Chan
- Division of Genetics and Molecular Biology, Institute of Biological Sciences, Faculty of Science, University of Malaya, 50603, Kuala Lumpur, Malaysia
| | - Kian Mau Goh
- Faculty of Biosciences and Medical Engineering, Universiti Teknologi Malaysia, 81310, Skudai, Johor, Malaysia
| | - Javier Pascual
- Department of Microbial Ecology and Diversity Research, Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Brunswick, Germany.
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