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Morimoto Y, Lu YJ, Zuo H, Aibibula Z, Tohya M, Kirikae T, Hiramatsu K, Daida H, Baba T. Pseudomonas allokribbensis sp. nov. and Pseudomonas gozinkensis sp. nov., Two New Species Isolated from a Volcanic Island, Izu Oshima, Japan. Curr Microbiol 2021; 78:1670-1677. [PMID: 33660045 DOI: 10.1007/s00284-021-02409-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Accepted: 02/10/2021] [Indexed: 12/22/2022]
Abstract
The genomes of two Pseudomonas strains, IzPS23T and IzPS32dT isolated from soil samples of Izu Oshima were compared to Pseudomonas type strains. Whole-genome sequence analysis revealed both belong to the Pseudomonas fluorescens lineage. The average nucleotide identity values of the whole-genome sequences of IzPS23T and IzPS32dT compared with other type strains showed high correlations with Pseudomonas kribbensis (93.1%) and Pseudomonas glycinae (93.5%), respectively. Genome-to-genome distances between the whole-genome sequences of IzPS23T and IzPS32dT showed correlations with Pseudomonas kribbensis (51.0%) and Pseudomonas glycinae (53.2%), respectively. Genotypic and phenotypic analysis indicated the two strains were novel species, and were named Pseudomonas allokribbensis (IzPS23T = CECT 9961T, = LMG 31525T) and Pseudomonas gozinkensis (IzPS32dT = CECT 9962T, = LMG 31526T), respectively.
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Affiliation(s)
- Yuh Morimoto
- Department of Microbiology, Faculty of Medicine, Juntendo University, Tokyo, Japan.,Faculty of Health Science, Juntendo University, Tokyo, Japan
| | - Yu Jie Lu
- Center of Excellence for Infection Control Science, Graduate School of Medicine, Juntendo University, Tokyo, Japan
| | - Hui Zuo
- Department of Microbiology, Faculty of Medicine, Juntendo University, Tokyo, Japan.,Atopy (Allergy) Research Center, Juntendo University Graduate School of Medicine, Tokyo, Japan
| | - Zulipiya Aibibula
- Atopy (Allergy) Research Center, Juntendo University Graduate School of Medicine, Tokyo, Japan
| | - Mari Tohya
- Department of Microbiology, Faculty of Medicine, Juntendo University, Tokyo, Japan
| | - Teruo Kirikae
- Department of Microbiology, Faculty of Medicine, Juntendo University, Tokyo, Japan
| | - Keiichi Hiramatsu
- Department of Microbiology, Faculty of Medicine, Juntendo University, Tokyo, Japan.,Center of Excellence for Infection Control Science, Graduate School of Medicine, Juntendo University, Tokyo, Japan
| | - Hiroyuki Daida
- Faculty of Health Science, Juntendo University, Tokyo, Japan
| | - Tadashi Baba
- Department of Microbiology, Faculty of Medicine, Juntendo University, Tokyo, Japan. .,Department of Microbiology, Juntendo University Graduate School of Medicine, 2-1-1 Hongo, Bunkyo-ku, Tokyo, 113-8421, Japan.
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