Genome analysis reveals that the correct name of type strain Adlercreutzia caecicola DSM 22242T is Parvibacter caecicola Clavel et al. 2013

Adlercreutzia hattorii sp. nov., an equol non-producing bacterium isolated from human faeces

Two obligately anaerobic, Gram-stain-positive, rod-shaped bacteria were isolated from faecal samples of healthy humans in Japan. 16S rRNA gene sequence analysis indicated that these two strains (8CFCBH1^T and 9CBH6) belonged to the genus Adlercreutzia, which is known as an equol-producing bacterium. The closest neighbours of strain 8CFCBH1^T were Adlercreutzia equolifaciens subsp. equolifaciens DSM 19450^T (98.6%), Adlercreutzia equolifaciens subsp. celatus do03^T (98.4%), Adlercreutzia muris WCA-131-CoC-2^T (96.6%), Parvibacter caecicola NR06^T (96.4%), Adlercreutzia caecimuris B7^T (95.3%) and Adlercreutzia mucosicola Mt1B8^T (95.3%). The closest relatives to strain 9CBH6 were A. equolifaciens subsp. equolifaciens DSM 19450^T (99.8%), A. equolifaciens subsp. celatus do03^T (99.6%) and A. muris WCA-131-CoC-2^T (96.8%). Strain 8CFCBH1^T showed 22.3-53.5% digital DNA-DNA hybridization (dDDH) values with its related species. In addition, the average nucleotide identity (ANI) values between strain 8CFCBH1^T and its related species ranged from 75.4 to 93.3%. On the other hand, strain 9CBH6 was considered as A. equolifaciens based on the dDDH and ANI values (>70% dDDH and >95-96% ANI). Strain 9CBH6 showed daidzein-converting activity, as expected from the result of genome analysis. The genome of strain 8CFCBH1^T lacked four genes involved in equol production. Growing cells of strain 8CFCBH1^T were not capable of converting daidzein. Based on the collected data, strain 8CFCBH1^T represents a novel species in the genus Adlercreutzia, for which the name Adlercreutzia hattorii sp. nov. is proposed. The type strain of A. hattorii is 8CFCBH1^T (=JCM 34083^T=DSM 112284^T).

Adlercreutzia rubneri sp. nov., a resveratrol-metabolizing bacterium isolated from human faeces and emended description of the genus Adlercreutzia

The novel, anaerobic, Gram-positive, rod-shaped bacterial strain, ResAG-91^T, was isolated from a faecal sample of a male human volunteer. Analysis of the 16S rRNA gene sequence revealed that strain ResAG-91^T showed high similarity to the type strains of Adlercreutzia equolifaciens subsp. equolifaciens and Adlercreutzia equolifaciens subsp. celatus. Analysis of the whole draft genome sequences, i.e. digital DNA–DNA hybridization (dDDH) and average nucleotide identity (ANI), of strain ResAG-91^T and the type strains of Adlercreutzia species revealed that strain ResAG-91^T represents a novel species of the genus Adlercreutzia. The genome size of strain ResAG-91^T is 2.8 Mbp and the G+C content is 63.3 mol%. The major respiratory quinone of strain ResAG-91^T was MMK-5 (methylmenaquinone). Major cellular fatty acids were C15 : 0 anteiso, C14 : 0 iso and C14 : 0 2-OH. Galactose and ribose were detected as major whole cell sugars. Furthermore, the peptidoglycan type of strain ResAG-91^T was A1γ with meso-diaminopimelic acid. The polar lipids were phosphatidylglycerol, diphosphatidylglycerol, one unidentified lipid, three unidentified phospholipids and five unidentified glycolipids. Strain ResAG-91^T was able to metabolize the stilbene resveratrol into dihydroresveratrol. On the basis of this polyphasic approach, including phenotypical, molecular (16S rRNA gene and whole genome sequencing) and biochemical (fatty acids, quinones, polar lipids, peptidoglycan, whole cell sugars, Rapid ID32A and API20A) analyses, we propose the novel species Adlercreutzia rubneri sp. nov. with the type and only strain ResAG-91^T (=DSM 111416^T=JCM 34176^T=LMG 31897^T).