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Hayashi M, Yonetamari J, Muto Y, Tanaka K. Complete genome sequence of Parvimonas parva: first isolate of a human clinical specimen from Japan. Microbiol Resour Announc 2025; 14:e0125224. [PMID: 39918336 PMCID: PMC11895464 DOI: 10.1128/mra.01252-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2024] [Accepted: 01/13/2025] [Indexed: 03/12/2025] Open
Abstract
Parvimonas parva is a bacterium belonging to the Peptoniphilaceae family, which was first classified in 2021. Herein, we report the complete genome sequence of P. parva (GAI15033) isolated from a clinical sample in Japan. The genome comprises a 1,447,534 bp circular chromosome.
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Affiliation(s)
- Masahiro Hayashi
- Institute for Glyco-core Research iGCORE, Gifu University, Gifu City, Gifu, Japan
- Division of Anaerobe Research, Life Science Research Center, Gifu University, Gifu City, Gifu, Japan
- Gifu University Center for Conservation of Microbial Genetic Resource, Gifu City, Gifu, Japan
| | - Jun Yonetamari
- Division of Anaerobe Research, Life Science Research Center, Gifu University, Gifu City, Gifu, Japan
- Division of Clinical Laboratory, Gifu University Hospital, Gifu City, Gifu, Japan
- United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University, Gifu City, Gifu, Japan
| | - Yoshinori Muto
- Division of Anaerobe Research, Life Science Research Center, Gifu University, Gifu City, Gifu, Japan
| | - Kaori Tanaka
- Institute for Glyco-core Research iGCORE, Gifu University, Gifu City, Gifu, Japan
- Division of Anaerobe Research, Life Science Research Center, Gifu University, Gifu City, Gifu, Japan
- Gifu University Center for Conservation of Microbial Genetic Resource, Gifu City, Gifu, Japan
- United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University, Gifu City, Gifu, Japan
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Munson E, Carroll KC. Update on Accepted Novel Bacterial Isolates Derived from Human Clinical Specimens and Taxonomic Revisions Published in 2020 and 2021. J Clin Microbiol 2023; 61:e0028222. [PMID: 36533910 PMCID: PMC9879126 DOI: 10.1128/jcm.00282-22] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
A number of factors, including microbiome analyses and the increased utilization of whole-genome sequencing in the clinical microbiology laboratory, has contributed to the explosion of novel prokaryotic species discovery, as well as bacterial taxonomy revision. This review attempts to summarize such changes relative to human clinical specimens that occurred in 2020 and 2021, per primary publication in the International Journal of Systematic and Evolutionary Microbiology or acceptance on Validation Lists published by the International Journal of Systematic and Evolutionary Microbiology. Of particular significance among valid and effectively published taxa within the past 2 years were novel Corynebacterium spp., coagulase-positive staphylococci, Pandoraea spp., and members of family Yersiniaceae. Noteworthy taxonomic revisions include those within the Bacillus and Lactobacillus genera, family Staphylococcaceae (including unifications of subspecies designations to species level taxa), Elizabethkingia spp., and former members of Clostridium spp. and Bacteroides spp. Revisions within the Brucella genus have the potential to cause deleterious effects unless the relevance of such changes is properly communicated by microbiologists to stakeholders in clinical practice, infection prevention, and public health.
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Affiliation(s)
- Erik Munson
- Department of Medical Laboratory Science, Marquette University, Milwaukee, Wisconsin, USA
| | - Karen C. Carroll
- Division of Medical Microbiology, Department of Pathology, The Johns Hopkins University School of Medicine, Baltimore, Maryland, USA
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