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You Y, Xiao J, Chen J, Li Y, Li R, Zhang S, Jiang Q, Liu P. Integrated Information for Pathogenicity and Treatment of Spiroplasma. Curr Microbiol 2024; 81:252. [PMID: 38953991 DOI: 10.1007/s00284-024-03730-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2023] [Accepted: 05/05/2024] [Indexed: 07/04/2024]
Abstract
Spiroplasma, belonging to the class Mollicutes, is a small, helical, motile bacterium lacking a cell wall. Its host range includes insects, plants, and aquatic crustaceans. Recently, a few human cases of Spiroplasma infection have been reported. The diseases caused by Spiroplasma have brought about serious economic losses and hindered the healthy development of agriculture. The pathogenesis of Spiroplasma involves the ability to adhere, such as through the terminal structure of Spiroplasma, colonization, and invasive enzymes. However, the exact pathogenic mechanism of Spiroplasma remains a mystery. Therefore, we systematically summarize all the information about Spiroplasma in this review article. This provides a reference for future studies on virulence factors and treatment strategies of Spiroplasma.
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Affiliation(s)
- Yixue You
- Institute of Pathogenic Biology, Basic Medical School, Hengyang Medical School, University of South China, Hengyang, 421001, China
| | - Jianmin Xiao
- Institute of Pathogenic Biology, Basic Medical School, Hengyang Medical School, University of South China, Hengyang, 421001, China
| | - Jiaxin Chen
- Institute of Pathogenic Biology, Basic Medical School, Hengyang Medical School, University of South China, Hengyang, 421001, China
| | - Yuxin Li
- Institute of Pathogenic Biology, Basic Medical School, Hengyang Medical School, University of South China, Hengyang, 421001, China
| | - Rong Li
- Institute of Pathogenic Biology, Basic Medical School, Hengyang Medical School, University of South China, Hengyang, 421001, China
| | - Siyuan Zhang
- Institute of Pathogenic Biology, Basic Medical School, Hengyang Medical School, University of South China, Hengyang, 421001, China
- Freshwater Fisheries Research Institute of Jiangsu Province, Nanjing, 210017, China
| | - Qichen Jiang
- Freshwater Fisheries Research Institute of Jiangsu Province, Nanjing, 210017, China.
| | - Peng Liu
- Institute of Pathogenic Biology, Basic Medical School, Hengyang Medical School, University of South China, Hengyang, 421001, China.
- Hunan Provincial Key Laboratory for Special Pathogens Prevention and Control, Institute of Pathogenic Biology, Hengyang Medical College, University of South China, Hengyang, 421001, Hunan, China.
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2
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Chen X, Xue J, Dong X, Lu P. Uncovering virulence factors in Cronobacter sakazakii: insights from genetic screening and proteomic profiling. Appl Environ Microbiol 2023; 89:e0102823. [PMID: 37750707 PMCID: PMC10617496 DOI: 10.1128/aem.01028-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Accepted: 07/15/2023] [Indexed: 09/27/2023] Open
Abstract
The increasing problem of antibiotic resistance has driven the search for virulence factors in pathogenic bacteria, which can serve as targets for the development of new antibiotics. Although whole-genome Tn5 transposon mutagenesis combined with phenotypic assays has been a widely used approach, its efficiency remains low due to labor-intensive processes. In this study, we aimed to identify specific genes and proteins associated with the virulence of Cronobacter sakazakii, a pathogenic bacterium known for causing severe infections, particularly in infants and immunocompromised individuals. By employing a combination of genetic screening, comparative proteomics, and in vivo validation using zebrafish and rat models, we rapidly screened highly virulent strains and identified two genes, rcsA and treR, as potential regulators of C. sakazakii toxicity toward zebrafish and rats. Proteomic profiling revealed upregulated proteins upon knockout of rcsA and treR, including FabH, GshA, GppA, GcvH, IhfB, RfaC, MsyB, and three unknown proteins. Knockout of their genes significantly weakened bacterial virulence, confirming their role as potential virulence factors. Our findings contribute to understanding the pathogenicity of C. sakazakii and provide insights into the development of targeted interventions and therapies against this bacterium.IMPORTANCEThe emergence of antibiotic resistance in pathogenic bacteria has become a critical global health concern, necessitating the identification of virulence factors as potential targets for the development of new antibiotics. This study addresses the limitations of conventional approaches by employing a combination of genetic screening, comparative proteomics, and in vivo validation to rapidly identify specific genes and proteins associated with the virulence of Cronobacter sakazakii, a highly pathogenic bacterium responsible for severe infections in vulnerable populations. The identification of two genes, rcsA and treR, as potential regulators of C. sakazakii toxicity toward zebrafish and rats and the proteomic profiling upon knockout of rcsA and treR provides novel insights into the mechanisms underlying bacterial virulence. The findings contribute to our understanding of C. sakazakii's pathogenicity, shed light on the regulatory pathways involved in bacterial virulence, and offer potential targets for the development of novel interventions against this highly virulent bacterium.
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Affiliation(s)
- Xi Chen
- Tianjin Eye Hospital, Tianjin Eye Institute,Tianjin Key Laboratory of Ophthalmology and Visual Science, Tianjin, China
| | - Juan Xue
- Institute of Infection and Immunity, Taihe Hospital, Hubei University of Medicine, Shiyan, China
| | - Xiaoli Dong
- Tianjin Eye Hospital, Tianjin Eye Institute,Tianjin Key Laboratory of Ophthalmology and Visual Science, Tianjin, China
| | - Ping Lu
- Tianjin Eye Hospital, Tianjin Eye Institute,Tianjin Key Laboratory of Ophthalmology and Visual Science, Tianjin, China
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3
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Dubrana MP, Béven L, Arricau-Bouvery N, Duret S, Claverol S, Renaudin J, Saillard C. Differential expression of Spiroplasma citri surface protein genes in the plant and insect hosts. BMC Microbiol 2016; 16:53. [PMID: 27005573 PMCID: PMC4804543 DOI: 10.1186/s12866-016-0666-y] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2015] [Accepted: 03/07/2016] [Indexed: 11/10/2022] Open
Abstract
Background Spiroplasma citri is a cell wall-less, plant pathogenic bacteria that colonizes two distinct hosts, the leafhopper vector and the host plant. Given the absence of a cell wall, surface proteins including lipoproteins and transmembrane polypeptides are expected to play key roles in spiroplasma/host interactions. Important functions in spiroplasma/insect interactions have been shown for a few surface proteins such as the major lipoprotein spiralin, the transmembrane S. citri adhesion-related proteins (ScARPs) and the sugar transporter subunit Sc76. S. citri efficient transmission from the insect to the plant is expected to rely on its ability to adapt to the different environments and more specifically to regulate the expression of genes encoding surface-exposed proteins. Results Genes encoding S. citri lipoproteins and ScARPs were investigated for their expression level in axenic medium, in the leafhopper vector Circulifer haematoceps and in the host plant (periwinkle Catharanthus roseus) either insect-infected or graft-inoculated. The vast majority of the lipoprotein genes tested (25/28) differentially responded to the various host environments. Considering their relative expression levels in the different environments, the possible involvement of the targeted genes in spiroplasma host adaptation was discussed. In addition, two S. citri strains differing notably in their ability to express adhesin ScARP2b and pyruvate dehydrogenase E1 component differed in their capacity to multiply in the two hosts, the plant and the leafhopper vector. Conclusions This study provided us with a list of genes differentially expressed in the different hosts, leading to the identification of factors that are thought to be involved in the process of S. citri host adaptation. The identification of such factors is a key step for further understanding of S. citri pathogenesis. Moreover the present work highlights the high capacity of S. citri in tightly regulating the expression level of a large set of surface protein genes, despite the small size of its genome. Electronic supplementary material The online version of this article (doi:10.1186/s12866-016-0666-y) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Marie-Pierre Dubrana
- UMR 1332 Biologie du Fruit et Pathologie, INRA, F-33882, Villenave d'Ornon, France.,UMR 1332 Biologie du Fruit et Pathologie, Université de Bordeaux, F-33882, Villenave d'Ornon, France
| | - Laure Béven
- UMR 1332 Biologie du Fruit et Pathologie, INRA, F-33882, Villenave d'Ornon, France. .,UMR 1332 Biologie du Fruit et Pathologie, Université de Bordeaux, F-33882, Villenave d'Ornon, France.
| | - Nathalie Arricau-Bouvery
- UMR 1332 Biologie du Fruit et Pathologie, INRA, F-33882, Villenave d'Ornon, France.,UMR 1332 Biologie du Fruit et Pathologie, Université de Bordeaux, F-33882, Villenave d'Ornon, France
| | - Sybille Duret
- UMR 1332 Biologie du Fruit et Pathologie, INRA, F-33882, Villenave d'Ornon, France.,UMR 1332 Biologie du Fruit et Pathologie, Université de Bordeaux, F-33882, Villenave d'Ornon, France
| | - Stéphane Claverol
- Plateforme Protéome, CGFB, Université de Bordeaux, F-33076, Bordeaux, France
| | - Joël Renaudin
- UMR 1332 Biologie du Fruit et Pathologie, INRA, F-33882, Villenave d'Ornon, France.,UMR 1332 Biologie du Fruit et Pathologie, Université de Bordeaux, F-33882, Villenave d'Ornon, France
| | - Colette Saillard
- UMR 1332 Biologie du Fruit et Pathologie, INRA, F-33882, Villenave d'Ornon, France.,UMR 1332 Biologie du Fruit et Pathologie, Université de Bordeaux, F-33882, Villenave d'Ornon, France
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Saigo M, Golic A, Alvarez CE, Andreo CS, Hogenhout SA, Mussi MA, Drincovich MF. Metabolic regulation of phytoplasma malic enzyme and phosphotransacetylase supports the use of malate as an energy source in these plant pathogens. MICROBIOLOGY-SGM 2014; 160:2794-2806. [PMID: 25294105 DOI: 10.1099/mic.0.083469-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Phytoplasmas ('Candidatus Phytoplasma') are insect-vectored plant pathogens. The genomes of these bacteria are small with limited metabolic capacities making them dependent on their plant and insect hosts for survival. In contrast to mycoplasmas and other relatives in the class Mollicutes, phytoplasmas encode genes for malate transporters and malic enzyme (ME) for conversion of malate into pyruvate. It was hypothesized that malate is probably a major energy source for phytoplasmas as these bacteria are limited in the uptake and processing of carbohydrates. In this study, we investigated the metabolic capabilities of 'Candidatus (Ca.) phytoplasma' aster yellows witches'-broom (AYWB) malic enzyme (ME). We found that AYWB-ME has malate oxidative decarboxylation activity, being able to convert malate to pyruvate and CO2 with the reduction of either NAD or NADP, and displays distinctive kinetic mechanisms depending on the relative concentration of the substrates. AYWB-ME activity was strictly modulated by the ATP/ADP ratio, a feature which has not been found in other ME isoforms characterized to date. In addition, we found that the 'Ca. Phytoplasma' AYWB PduL-like enzyme (AYWB-PduL) harbours phosphotransacetylase activity, being able to convert acetyl-CoA to acetyl phosphate downstream of pyruvate. ATP also inhibited AYWB-PduL activity, as with AYWB-ME, and the product of the reaction catalysed by AYWB-PduL, acetyl phosphate, stimulated AYWB-ME activity. Overall, our data indicate that AYWB-ME and AYWB-PduL activities are finely coordinated by common metabolic signals, like ATP/ADP ratios and acetyl phosphate, which support their participation in energy (ATP) and reducing power [NAD(P)H] generation from malate in phytoplasmas.
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Affiliation(s)
- Mariana Saigo
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI- CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, 2000 Rosario, Argentina
| | - Adrián Golic
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI- CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, 2000 Rosario, Argentina
| | - Clarisa E Alvarez
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI- CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, 2000 Rosario, Argentina
| | - Carlos S Andreo
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI- CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, 2000 Rosario, Argentina
| | - Saskia A Hogenhout
- Department of Cell and Developmental Biology, The John Innes Centre, Norwich NR4 7UH, UK
| | - María A Mussi
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI- CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, 2000 Rosario, Argentina
| | - María F Drincovich
- Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI- CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, 2000 Rosario, Argentina
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Ku C, Lo WS, Chen LL, Kuo CH. Complete genomes of two dipteran-associated spiroplasmas provided insights into the origin, dynamics, and impacts of viral invasion in spiroplasma. Genome Biol Evol 2013; 5:1151-64. [PMID: 23711669 PMCID: PMC3698928 DOI: 10.1093/gbe/evt084] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Abstract
Spiroplasma is a genus of wall-less, low-GC, Gram-positive bacteria with helical morphology. As commensals or pathogens of plants, insects, ticks, or crustaceans, they are closely related with mycoplasmas and form a monophyletic group (Spiroplasma–Entomoplasmataceae–Mycoides) with Mycoplasma mycoides and its relatives. In this study, we report the complete genome sequences of Spiroplasma chrysopicola and S. syrphidicola from the Chrysopicola clade. These species form the sister group to the Citri clade, which includes several well-known pathogenic spiroplasmas. Surprisingly, these two newly available genomes from the Chrysopicola clade contain no plectroviral genes, which were found to be highly repetitive in the previously sequenced genomes from the Citri clade. Based on the genome alignment and patterns of GC-skew, these two Chrysopicola genomes appear to be relatively stable, rather than being highly rearranged as those from the Citri clade. Phylogenetic analyses suggest that the susceptibility to plectroviral invasion probably originated in the common ancestor of the Citri clade or one of its subclades. This susceptibility may be attributed to the absence of antiviral systems found in the Chrysopicola clade. Using the virus-free genomes of the Chrysopicola clade as references, we inferred the putative viral integration sites in the Citri genomes. Comparisons of syntenic regions suggest that the extensive viral invasion in the Citri clade promoted genome rearrangements and expansions. More importantly, the viral invasion may have facilitated horizontal gene transfers that contributed to adaptation in the Citri clade.
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Affiliation(s)
- Chuan Ku
- Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan
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Kube M, Mitrovic J, Duduk B, Rabus R, Seemüller E. Current view on phytoplasma genomes and encoded metabolism. ScientificWorldJournal 2011; 2012:185942. [PMID: 22550465 PMCID: PMC3322544 DOI: 10.1100/2012/185942] [Citation(s) in RCA: 73] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2011] [Accepted: 11/20/2011] [Indexed: 11/21/2022] Open
Abstract
Phytoplasmas are specialised bacteria that are obligate parasites of plant phloem tissue and insects. These bacteria have resisted all attempts of cell-free cultivation. Genome research is of particular importance to analyse the genetic endowment of such bacteria. Here we review the gene content of the four completely sequenced ‘Candidatus Phytoplasma' genomes that include those of ‘Ca. P. asteris' strains OY-M and AY-WB, ‘Ca. P. australiense,' and ‘Ca. P. mali'. These genomes are characterized by chromosome condensation resulting in sizes below 900 kb and a G + C content of less than 28%. Evolutionary adaption of the phytoplasmas to nutrient-rich environments resulted in losses of genetic modules and increased host dependency highlighted by the transport systems and limited metabolic repertoire. On the other hand, duplication and integration events enlarged the chromosomes and contribute to genome instability. Present differences in the content of membrane and secreted proteins reflect the host adaptation in the phytoplasma strains. General differences are obvious between different phylogenetic subgroups. ‘Ca. P. mali' is separated from the other strains by its deviating chromosome organization, the genetic repertoire for recombination and excision repair of nucleotides or the loss of the complete energy-yielding part of the glycolysis. Apart from these differences, comparative analysis exemplified that all four phytoplasmas are likely to encode an alternative pathway to generate pyruvate and ATP.
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Affiliation(s)
- Michael Kube
- Department of Crop and Animal Sciences, Humboldt-University of Berlin, Lentzeallee 55/57, 14195 Berlin, Germany.
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Breton M, Duret S, Béven L, Dubrana MP, Renaudin J. I-SceI-mediated plasmid deletion and intra-molecular recombination in Spiroplasma citri. J Microbiol Methods 2010; 84:216-22. [PMID: 21129414 DOI: 10.1016/j.mimet.2010.11.020] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2010] [Revised: 11/16/2010] [Accepted: 11/23/2010] [Indexed: 12/27/2022]
Abstract
S. citri wild-type strain GII3 carries six plasmids (pSci1 to -6) that are thought to encode determinants involved in the transmission of the spiroplasma by its leafhopper vector. In this study we report the use of meganuclease I-SceI for plasmid deletion in S. citri. Plasmids pSci1NT-I and pSci6PT-I, pSci1 and pSci6 derivatives that contain the tetM selection marker and a unique I-SceI recognition site were first introduced into S. citri strains 44 (having no plasmid) and GII3 (carrying pSci1-6), respectively. Due to incompatibility of homologous replication regions, propagation of the S. citri GII3 transformant in selective medium resulted in the replacement of the natural pSci6 by pSci6PT-I. The spiroplasmal transformants were further transformed by an oriC plasmid carrying the I-SceI gene under the control of the spiralin gene promoter. In the S. citri 44 transformant, expression of I-SceI resulted in rapid loss of pSciNT-I showing that expression of I-SceI can be used as a counter-selection tool in spiroplasmas. In the case of the S. citri GII3 transformant carrying pSci6PT-I, expression of I-SceI resulted in the deletion of plasmid fragments comprising the I-SceI site and the tetM marker. Delineating the I-SceI generated deletions proved they had occurred though recombination between homologous sequences. To our knowledge this is the first report of I-SceI mediated intra-molecular recombination in mollicutes.
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Affiliation(s)
- Marc Breton
- INRA, Génomique Diversité et Pouvoir Pathogéne, Villenave d'Ornon, France
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8
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Carle P, Saillard C, Carrère N, Carrère S, Duret S, Eveillard S, Gaurivaud P, Gourgues G, Gouzy J, Salar P, Verdin E, Breton M, Blanchard A, Laigret F, Bové JM, Renaudin J, Foissac X. Partial chromosome sequence of Spiroplasma citri reveals extensive viral invasion and important gene decay. Appl Environ Microbiol 2010; 76:3420-6. [PMID: 20363791 PMCID: PMC2876439 DOI: 10.1128/aem.02954-09] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2009] [Accepted: 03/25/2010] [Indexed: 11/20/2022] Open
Abstract
The assembly of 20,000 sequencing reads obtained from shotgun and chromosome-specific libraries of the Spiroplasma citri genome yielded 77 chromosomal contigs totaling 1,674 kbp (92%) of the 1,820-kbp chromosome. The largest chromosomal contigs were positioned on the physical and genetic maps constructed from pulsed-field gel electrophoresis and Southern blot hybridizations. Thirty-eight contigs were annotated, resulting in 1,908 predicted coding sequences (CDS) representing an overall coding density of only 74%. Cellular processes, cell metabolism, and structural-element CDS account for 29% of the coding capacity, CDS of external origin such as viruses and mobile elements account for 24% of the coding capacity, and CDS of unknown function account for 47% of the coding capacity. Among these, 21% of the CDS group into 63 paralog families. The organization of these paralogs into conserved blocks suggests that they represent potential mobile units. Phage-related sequences were particularly abundant and include plectrovirus SpV1 and SVGII3 and lambda-like SpV2 sequences. Sixty-nine copies of transposases belonging to four insertion sequence (IS) families (IS30, IS481, IS3, and ISNCY) were detected. Similarity analyses showed that 21% of chromosomal CDS were truncated compared to their bacterial orthologs. Transmembrane domains, including signal peptides, were predicted for 599 CDS, of which 58 were putative lipoproteins. S. citri has a Sec-dependent protein export pathway. Eighty-four CDS were assigned to transport, such as phosphoenolpyruvate phosphotransferase systems (PTS), the ATP binding cassette (ABC), and other transporters. Besides glycolytic and ATP synthesis pathways, it is noteworthy that S. citri possesses a nearly complete pathway for the biosynthesis of a terpenoid.
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Affiliation(s)
- Patricia Carle
- INRA, UMR1090 Génomique Diversité Pouvoir Pathogène, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France, Université Victor Segalen Bordeaux 2, UMR1090, F-33883 Villenave d'Ornon, France, INRA, CNRS, Laboratoire Interactions Plantes Micro-Organismes UMR441/2594, F-31320 Castanet Tolosan, France, INRA, UR419 Espèces Fruitières, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France
| | - Colette Saillard
- INRA, UMR1090 Génomique Diversité Pouvoir Pathogène, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France, Université Victor Segalen Bordeaux 2, UMR1090, F-33883 Villenave d'Ornon, France, INRA, CNRS, Laboratoire Interactions Plantes Micro-Organismes UMR441/2594, F-31320 Castanet Tolosan, France, INRA, UR419 Espèces Fruitières, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France
| | - Nathalie Carrère
- INRA, UMR1090 Génomique Diversité Pouvoir Pathogène, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France, Université Victor Segalen Bordeaux 2, UMR1090, F-33883 Villenave d'Ornon, France, INRA, CNRS, Laboratoire Interactions Plantes Micro-Organismes UMR441/2594, F-31320 Castanet Tolosan, France, INRA, UR419 Espèces Fruitières, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France
| | - Sébastien Carrère
- INRA, UMR1090 Génomique Diversité Pouvoir Pathogène, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France, Université Victor Segalen Bordeaux 2, UMR1090, F-33883 Villenave d'Ornon, France, INRA, CNRS, Laboratoire Interactions Plantes Micro-Organismes UMR441/2594, F-31320 Castanet Tolosan, France, INRA, UR419 Espèces Fruitières, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France
| | - Sybille Duret
- INRA, UMR1090 Génomique Diversité Pouvoir Pathogène, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France, Université Victor Segalen Bordeaux 2, UMR1090, F-33883 Villenave d'Ornon, France, INRA, CNRS, Laboratoire Interactions Plantes Micro-Organismes UMR441/2594, F-31320 Castanet Tolosan, France, INRA, UR419 Espèces Fruitières, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France
| | - Sandrine Eveillard
- INRA, UMR1090 Génomique Diversité Pouvoir Pathogène, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France, Université Victor Segalen Bordeaux 2, UMR1090, F-33883 Villenave d'Ornon, France, INRA, CNRS, Laboratoire Interactions Plantes Micro-Organismes UMR441/2594, F-31320 Castanet Tolosan, France, INRA, UR419 Espèces Fruitières, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France
| | - Patrice Gaurivaud
- INRA, UMR1090 Génomique Diversité Pouvoir Pathogène, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France, Université Victor Segalen Bordeaux 2, UMR1090, F-33883 Villenave d'Ornon, France, INRA, CNRS, Laboratoire Interactions Plantes Micro-Organismes UMR441/2594, F-31320 Castanet Tolosan, France, INRA, UR419 Espèces Fruitières, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France
| | - Géraldine Gourgues
- INRA, UMR1090 Génomique Diversité Pouvoir Pathogène, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France, Université Victor Segalen Bordeaux 2, UMR1090, F-33883 Villenave d'Ornon, France, INRA, CNRS, Laboratoire Interactions Plantes Micro-Organismes UMR441/2594, F-31320 Castanet Tolosan, France, INRA, UR419 Espèces Fruitières, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France
| | - Jérome Gouzy
- INRA, UMR1090 Génomique Diversité Pouvoir Pathogène, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France, Université Victor Segalen Bordeaux 2, UMR1090, F-33883 Villenave d'Ornon, France, INRA, CNRS, Laboratoire Interactions Plantes Micro-Organismes UMR441/2594, F-31320 Castanet Tolosan, France, INRA, UR419 Espèces Fruitières, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France
| | - Pascal Salar
- INRA, UMR1090 Génomique Diversité Pouvoir Pathogène, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France, Université Victor Segalen Bordeaux 2, UMR1090, F-33883 Villenave d'Ornon, France, INRA, CNRS, Laboratoire Interactions Plantes Micro-Organismes UMR441/2594, F-31320 Castanet Tolosan, France, INRA, UR419 Espèces Fruitières, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France
| | - Eric Verdin
- INRA, UMR1090 Génomique Diversité Pouvoir Pathogène, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France, Université Victor Segalen Bordeaux 2, UMR1090, F-33883 Villenave d'Ornon, France, INRA, CNRS, Laboratoire Interactions Plantes Micro-Organismes UMR441/2594, F-31320 Castanet Tolosan, France, INRA, UR419 Espèces Fruitières, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France
| | - Marc Breton
- INRA, UMR1090 Génomique Diversité Pouvoir Pathogène, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France, Université Victor Segalen Bordeaux 2, UMR1090, F-33883 Villenave d'Ornon, France, INRA, CNRS, Laboratoire Interactions Plantes Micro-Organismes UMR441/2594, F-31320 Castanet Tolosan, France, INRA, UR419 Espèces Fruitières, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France
| | - Alain Blanchard
- INRA, UMR1090 Génomique Diversité Pouvoir Pathogène, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France, Université Victor Segalen Bordeaux 2, UMR1090, F-33883 Villenave d'Ornon, France, INRA, CNRS, Laboratoire Interactions Plantes Micro-Organismes UMR441/2594, F-31320 Castanet Tolosan, France, INRA, UR419 Espèces Fruitières, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France
| | - Frédéric Laigret
- INRA, UMR1090 Génomique Diversité Pouvoir Pathogène, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France, Université Victor Segalen Bordeaux 2, UMR1090, F-33883 Villenave d'Ornon, France, INRA, CNRS, Laboratoire Interactions Plantes Micro-Organismes UMR441/2594, F-31320 Castanet Tolosan, France, INRA, UR419 Espèces Fruitières, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France
| | - Joseph-Marie Bové
- INRA, UMR1090 Génomique Diversité Pouvoir Pathogène, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France, Université Victor Segalen Bordeaux 2, UMR1090, F-33883 Villenave d'Ornon, France, INRA, CNRS, Laboratoire Interactions Plantes Micro-Organismes UMR441/2594, F-31320 Castanet Tolosan, France, INRA, UR419 Espèces Fruitières, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France
| | - Joel Renaudin
- INRA, UMR1090 Génomique Diversité Pouvoir Pathogène, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France, Université Victor Segalen Bordeaux 2, UMR1090, F-33883 Villenave d'Ornon, France, INRA, CNRS, Laboratoire Interactions Plantes Micro-Organismes UMR441/2594, F-31320 Castanet Tolosan, France, INRA, UR419 Espèces Fruitières, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France
| | - Xavier Foissac
- INRA, UMR1090 Génomique Diversité Pouvoir Pathogène, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France, Université Victor Segalen Bordeaux 2, UMR1090, F-33883 Villenave d'Ornon, France, INRA, CNRS, Laboratoire Interactions Plantes Micro-Organismes UMR441/2594, F-31320 Castanet Tolosan, France, INRA, UR419 Espèces Fruitières, 71 Avenue Edouard Bourlaux, BP81, F-33883 Villenave d'Ornon Cedex, France
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9
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Sequences essential for transmission of Spiroplasma citri by its leafhopper vector, Circulifer haematoceps, revealed by plasmid curing and replacement based on incompatibility. Appl Environ Microbiol 2010; 76:3198-205. [PMID: 20305023 DOI: 10.1128/aem.00181-10] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Spiroplasma citri GII3 contains highly related low-copy-number plasmids pSci1 to -6. Despite the strong similarities between their replication regions, these plasmids coexist in the spiroplasma cells, indicating that they are mutually compatible. The pSci1 to -6 plasmids encode the membrane proteins known as S. citri adhesion-related proteins (ScARPs) (pSci1 to -5) and the hydrophilic protein P32 (pSci6), which had been tentatively associated with insect transmission, as they were not detected in non-insect-transmissible strains. With the aim of further investigating the role of plasmid-encoded determinants in insect transmission, we have constructed S. citri mutant strains that differ in their plasmid contents by developing a plasmid curing/replacement strategy based on the incompatibility of plasmids having identical replication regions. Experimental transmission of these S. citri plasmid mutants through injection into the leafhopper vector Circulifer haematoceps revealed that pSci6, more precisely, the pSci6_06 coding sequence, encoding a protein of unknown function, was essential for transmission. In contrast, ScARPs and P32 were dispensable for both acquisition and transmission of the spiroplasmas by the leafhopper vector, even though S. citri mutants lacking pSci1 to -5 (encoding ScARPs) were acquired and transmitted at lower efficiencies than the wild-type strain GII3.
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10
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Breton M, Sagné E, Duret S, Béven L, Citti C, Renaudin J. First report of a tetracycline-inducible gene expression system for mollicutes. MICROBIOLOGY-SGM 2009; 156:198-205. [PMID: 19797362 DOI: 10.1099/mic.0.034074-0] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Inducible promoter systems are powerful tools for studying gene function in prokaryotes but have never been shown to function in mollicutes. In this study we evaluated the efficacy of the tetracycline-inducible promoter Pxyl/tetO(2) from Bacillus subtilis in controlling gene expression in two mollicutes, the plant pathogen Spiroplasma citri and the animal pathogen Mycoplasma agalactiae. An S. citri plasmid carrying the spiralin gene under the control of the xyl/tetO(2) tetracycline-inducible promoter and the TetR repressor gene under the control of a constitutive spiroplasmal promoter was introduced into the spiralin-less S. citri mutant GII3-9a3. In the absence of tetracycline, expression of TetR almost completely abolished expression of spiralin from the xyl/tetO(2) promoter. Adding tetracycline (>50 ng ml(-1)) to the medium induced high-level expression of spiralin. Interestingly, inducible expression of spiralin was also detected in vivo: in S. citri-infected leafhoppers fed on tetracycline-containing medium and in S. citri-infected plants watered with tetracycline. A similar construct was introduced into the M. agalactiae chromosome through transposition. Tetracycline-induced expression of spiralin proved the TetR-Pxyl/tetO(2) system to be functional in the ruminant pathogen, suggesting that this tetracycline-inducible promoter system might be of general use in mollicutes.
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Affiliation(s)
- Marc Breton
- Université de Bordeaux 2, UMR 1090 Génomique Diversité Pouvoir Pathogène, F-33883 Villenave d'Ornon, France.,INRA, UMR 1090 Génomique Diversité et Pouvoir Pathogène, F-33883 Villenave d'Ornon, France
| | - Evelyne Sagné
- Université de Toulouse, ENVT, UMR 1225 Interactions hôtes agents pathogènes, F-31076 Toulouse, France.,INRA, UMR 1225 Interactions hôtes agents pathogènes, F-31076 Toulouse, France
| | - Sybille Duret
- Université de Bordeaux 2, UMR 1090 Génomique Diversité Pouvoir Pathogène, F-33883 Villenave d'Ornon, France.,INRA, UMR 1090 Génomique Diversité et Pouvoir Pathogène, F-33883 Villenave d'Ornon, France
| | - Laure Béven
- Université de Bordeaux 2, UMR 1090 Génomique Diversité Pouvoir Pathogène, F-33883 Villenave d'Ornon, France.,INRA, UMR 1090 Génomique Diversité et Pouvoir Pathogène, F-33883 Villenave d'Ornon, France
| | - Christine Citti
- Université de Toulouse, ENVT, UMR 1225 Interactions hôtes agents pathogènes, F-31076 Toulouse, France.,INRA, UMR 1225 Interactions hôtes agents pathogènes, F-31076 Toulouse, France
| | - Joël Renaudin
- Université de Bordeaux 2, UMR 1090 Génomique Diversité Pouvoir Pathogène, F-33883 Villenave d'Ornon, France.,INRA, UMR 1090 Génomique Diversité et Pouvoir Pathogène, F-33883 Villenave d'Ornon, France
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11
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Breton M, Duret S, Arricau-Bouvery N, Béven L, Renaudin J. Characterizing the replication and stability regions of Spiroplasma citri plasmids identifies a novel replication protein and expands the genetic toolbox for plant-pathogenic spiroplasmas. MICROBIOLOGY-SGM 2008; 154:3232-3244. [PMID: 18832328 DOI: 10.1099/mic.0.2008/019562-0] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Spiroplasma citri strain GII3 contains seven plasmids, pSciA and pSci1-6, that share extensive regions of sequence homology and display a mosaic gene organization. Plasmid pSci2 comprises 12 coding sequences (CDS), three of which encode polypeptides homologous to proteins Soj/ParA, involved in chromosome partitioning, and TrsE and Mob/TraG, implicated in the type IV secretion pathway. One CDS encodes the adhesin-like protein ScARP3d whereas the other eight encode polypeptides with no homology to known proteins. The pSci2 CDS pE and soj have counterparts in all seven plasmids. Through successive deletions, various pSci2 derivatives were constructed and assessed for their ability to replicate by transformation of S. citri 44, a strain which has no plasmid. The smallest functional replicon was found to contain a single CDS (pE) and its flanking intergenic regions. Shuttle (S. citri/Escherichia coli) plasmids, in which CDS pE was disrupted, failed to replicate in S. citri, suggesting that PE is the replication protein of the S. citri plasmids. Successive propagations of pSci2-derived transformed spiroplasmas, in the absence of selection pressure, revealed that only pSci2 derivatives having an intact soj gene were stably maintained, indicating that the soj-encoded polypeptide is most likely involved in plasmid partitioning. Upon transformation, pSci2 derivatives, including shuttle (S. citri/E. coli) plasmids, were shown to replicate in all S. citri strains tested regardless of whether the strain possesses endogenous plasmids, such as strain GII3, or not, such as strain R8A2. In addition, the pSci replicons were introduced efficiently into the plant-pathogenic spiroplasmas Spiroplasma kunkelii and Spiroplasma phoeniceum, the transformation of which had never, to our knowledge, been described before. These studies show that, besides their implications for the biology of S. citri, the pSci plasmids hold considerable promise as vectors of general use for genetic studies of plant-pathogenic spiroplasmas. As an example, a HA-tagged S. citri protein was expressed in S. kunkelii. Detection of pE-hybridizing sequences in various group I spiroplasma species indicated that pE replicating plasmids were not restricted to the three plant-pathogenic spiroplasmas.
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Affiliation(s)
- Marc Breton
- Université de Bordeaux 2, UMR 1090 Génomique Diversité et Pouvoir Pathogène, F-33883 Villenave d'Ornon, France.,INRA, UMR 1090 Génomique Diversité et Pouvoir Pathogène, F-33883 Villenave d'Ornon, France
| | - Sybille Duret
- Université de Bordeaux 2, UMR 1090 Génomique Diversité et Pouvoir Pathogène, F-33883 Villenave d'Ornon, France.,INRA, UMR 1090 Génomique Diversité et Pouvoir Pathogène, F-33883 Villenave d'Ornon, France
| | - Nathalie Arricau-Bouvery
- Université de Bordeaux 2, UMR 1090 Génomique Diversité et Pouvoir Pathogène, F-33883 Villenave d'Ornon, France.,INRA, UMR 1090 Génomique Diversité et Pouvoir Pathogène, F-33883 Villenave d'Ornon, France
| | - Laure Béven
- Université de Bordeaux 2, UMR 1090 Génomique Diversité et Pouvoir Pathogène, F-33883 Villenave d'Ornon, France.,INRA, UMR 1090 Génomique Diversité et Pouvoir Pathogène, F-33883 Villenave d'Ornon, France
| | - Joël Renaudin
- Université de Bordeaux 2, UMR 1090 Génomique Diversité et Pouvoir Pathogène, F-33883 Villenave d'Ornon, France.,INRA, UMR 1090 Génomique Diversité et Pouvoir Pathogène, F-33883 Villenave d'Ornon, France
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12
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Tran-Nguyen LTT, Kube M, Schneider B, Reinhardt R, Gibb KS. Comparative genome analysis of "Candidatus Phytoplasma australiense" (subgroup tuf-Australia I; rp-A) and "Ca. Phytoplasma asteris" Strains OY-M and AY-WB. J Bacteriol 2008; 190:3979-91. [PMID: 18359806 PMCID: PMC2395047 DOI: 10.1128/jb.01301-07] [Citation(s) in RCA: 116] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2007] [Accepted: 03/12/2008] [Indexed: 11/20/2022] Open
Abstract
The chromosome sequence of "Candidatus Phytoplasma australiense" (subgroup tuf-Australia I; rp-A), associated with dieback in papaya, Australian grapevine yellows in grapevine, and several other important plant diseases, was determined. The circular chromosome is represented by 879,324 nucleotides, a GC content of 27%, and 839 protein-coding genes. Five hundred two of these protein-coding genes were functionally assigned, while 337 genes were hypothetical proteins with unknown function. Potential mobile units (PMUs) containing clusters of DNA repeats comprised 12.1% of the genome. These PMUs encoded genes involved in DNA replication, repair, and recombination; nucleotide transport and metabolism; translation; and ribosomal structure. Elements with similarities to phage integrases found in these mobile units were difficult to classify, as they were similar to both insertion sequences and bacteriophages. Comparative analysis of "Ca. Phytoplasma australiense" with "Ca. Phytoplasma asteris" strains OY-M and AY-WB showed that the gene order was more conserved between the closely related "Ca. Phytoplasma asteris" strains than to "Ca. Phytoplasma australiense." Differences observed between "Ca. Phytoplasma australiense" and "Ca. Phytoplasma asteris" strains included the chromosome size (18,693 bp larger than OY-M), a larger number of genes with assigned function, and hypothetical proteins with unknown function.
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Affiliation(s)
- L T T Tran-Nguyen
- Charles Darwin University, School of Environmental and Life Sciences, Darwin, NT, 0909, Australia.
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13
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Halbedel S, Hames C, Stülke J. Regulation of Carbon Metabolism in the Mollicutes and Its Relation to Virulence. J Mol Microbiol Biotechnol 2006; 12:147-54. [PMID: 17183222 DOI: 10.1159/000096470] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Abstract
The mollicutes are cell wall-less bacteria that live in close association with their eukaryotic hosts. Their genomes are strongly reduced and so are their metabolic capabilities. A survey of the available genome sequences reveals that the mollicutes are capable of utilizing sugars as source of carbon and energy via glycolysis. The pentose phosphate pathway is incomplete in these bacteria, and genes encoding enzymes of the tricarboxylic acid cycle are absent from the genomes. Sugars are transported by the phosphotransferase system. As in related bacteria, the phosphotransferase system does also seem to play a regulatory role in the mollicutes as can be concluded from the functionality of the regulatory HPr kinase/phosphorylase. In Mycoplasma pneumoniae, the activity of HPr kinase is triggered in the presence of glycerol. This carbon source may be important for the mollicutes since it is available in epithelial tissues and its metabolism results in the formation of hydrogen peroxide, the major virulence factor of several mollicutes. In plant-pathogenic mollicutes such as Spiroplasma citri, the regulation of carbon metabolism is crucial in the adaptation to life in plant tissues or the insect vectors. Thus, carbon metabolism seems to be intimately linked to pathogenicity in the mollicutes.
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Affiliation(s)
- Sven Halbedel
- Abteilung für Allgemeine Mikrobiologie, Georg-August-Universität Göttingen, Göttingen, Germany
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14
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Berho N, Duret S, Danet JL, Renaudin J. Plasmid pSci6 from Spiroplasma citri GII-3 confers insect transmissibility to the non-transmissible strain S. citri 44. Microbiology (Reading) 2006; 152:2703-2716. [PMID: 16946265 DOI: 10.1099/mic.0.29085-0] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The insect-transmissible strain GII-3 of Spiroplasma citri contains plasmids pSci1–6, five of which (pSci1–5) encode adhesin-like proteins and one (pSci6) encodes protein P32, which has been associated with insect transmissibility. In contrast, S. citri strains ASP-1 and 44, which cannot be transmitted via injection into the leafhopper vector Circulifer haematoceps, lack these proteins and also do not carry plasmids pSci1–6. To further study the apparent relationship between the presence of plasmids and insect transmissibility, plasmids from S. citri GII-3 were introduced into the insect-non-transmissible S. citri strain 44 by electrotransformation using the tetM gene as the selection marker. Tetracycline-resistant transformants were shown to carry one, two or three distinct plasmids. Plasmids pSci1–6 were all detected in the transformants, pSci1 being the most frequently found, alone or together with other plasmids. Selected S. citri 44 transformants having distinct plasmid contents were submitted, separately or in combination, to experimental transmission to periwinkle (Catharanthus roseus) plants via injection into the leafhopper vector. The occurrence of symptomatic plants indicated that, in contrast to S. citri 44, spiroplasmal transformants were transmitted to the host plant, in which they multiplied. Spiroplasma cultures isolated from these infected plants all contained pSci6, leading to the conclusion that, under the experimental conditions used, transformation by pSci6 conferred insect transmissibility to S. citri strain 44. This is believed to be the first report of a phenotypic change associated with transformation of S. citri by natural plasmids.
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Affiliation(s)
- Nathalie Berho
- UMR 1090 Génomique Développement et Pouvoir Pathogène, INRA, Université de Bordeaux 2, Centre INRA de Bordeaux, 71 avenue Edouard Bourlaux, BP 81, 33883 Villenave d'Ornon Cedex, France
| | - Sybille Duret
- UMR 1090 Génomique Développement et Pouvoir Pathogène, INRA, Université de Bordeaux 2, Centre INRA de Bordeaux, 71 avenue Edouard Bourlaux, BP 81, 33883 Villenave d'Ornon Cedex, France
| | - Jean-Luc Danet
- UMR 1090 Génomique Développement et Pouvoir Pathogène, INRA, Université de Bordeaux 2, Centre INRA de Bordeaux, 71 avenue Edouard Bourlaux, BP 81, 33883 Villenave d'Ornon Cedex, France
| | - Joël Renaudin
- UMR 1090 Génomique Développement et Pouvoir Pathogène, INRA, Université de Bordeaux 2, Centre INRA de Bordeaux, 71 avenue Edouard Bourlaux, BP 81, 33883 Villenave d'Ornon Cedex, France
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15
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Bai X, Zhang J, Ewing A, Miller SA, Jancso Radek A, Shevchenko DV, Tsukerman K, Walunas T, Lapidus A, Campbell JW, Hogenhout SA. Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts. J Bacteriol 2006; 188:3682-96. [PMID: 16672622 PMCID: PMC1482866 DOI: 10.1128/jb.188.10.3682-3696.2006] [Citation(s) in RCA: 207] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Phytoplasmas ("Candidatus Phytoplasma," class Mollicutes) cause disease in hundreds of economically important plants and are obligately transmitted by sap-feeding insects of the order Hemiptera, mainly leafhoppers and psyllids. The 706,569-bp chromosome and four plasmids of aster yellows phytoplasma strain witches' broom (AY-WB) were sequenced and compared to the onion yellows phytoplasma strain M (OY-M) genome. The phytoplasmas have small repeat-rich genomes. This comparative analysis revealed that the repeated DNAs are organized into large clusters of potential mobile units (PMUs), which contain tra5 insertion sequences (ISs) and genes for specialized sigma factors and membrane proteins. So far, these PMUs appear to be unique to phytoplasmas. Compared to mycoplasmas, phytoplasmas lack several recombination and DNA modification functions, and therefore, phytoplasmas may use different mechanisms of recombination, likely involving PMUs, for the creation of variability, allowing phytoplasmas to adjust to the diverse environments of plants and insects. The irregular GC skews and the presence of ISs and large repeated sequences in the AY-WB and OY-M genomes are indicative of high genomic plasticity. Nevertheless, segments of approximately 250 kb located between the lplA and glnQ genes are syntenic between the two phytoplasmas and contain the majority of the metabolic genes and no ISs. AY-WB appears to be further along in the reductive evolution process than OY-M. The AY-WB genome is approximately 154 kb smaller than the OY-M genome, primarily as a result of fewer multicopy sequences, including PMUs. Furthermore, AY-WB lacks genes that are truncated and are part of incomplete pathways in OY-M.
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Affiliation(s)
- Xiaodong Bai
- Department of Entomology, The Ohio State University, Ohio Agricultural Research and Development Center, Wooster, 44691, USA
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16
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Duret S, André A, Renaudin J. Specific gene targeting in Spiroplasma citri: improved vectors and production of unmarked mutations using site-specific recombination. MICROBIOLOGY-SGM 2005; 151:2793-2803. [PMID: 16079355 DOI: 10.1099/mic.0.28123-0] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
In Spiroplasma citri, where homologous recombination is inefficient, specific gene targeting could only be achieved by using replicative, oriC plasmids. To improve the probability of selecting rare recombination events without fastidious, extensive passaging of the transformants, a new targeting vector was constructed, which was used to inactivate the crr gene encoding the IIA component of the glucose phosphotransferase system (PTS) permease. Selection of recombinants was based on a two-step strategy using two distinct selection markers, one of which could only be expressed once recombination had occurred through one single crossover at the target gene. According to this strategy, spiroplasmal transformants were screened and multiplied in the presence of gentamicin before the crr recombinants were selected for their resistance to tetracycline. In contrast to the wild-type strain GII-3, the crr-disrupted mutant GII3-gt1 used neither glucose nor trehalose, indicating that in S. citri the glucose and trehalose PTS permeases function with a single IIA component. In addition, the feasibility of using the transposon gammadelta TnpR/res recombination system to produce unmarked mutations in S. citri was demonstrated. In an arginine deiminase (arcA-disrupted) mutant, the tetM gene flanked by the res sequences was efficiently excised from the chromosome through expression of the TnpR resolvase from a replicative oriC plasmid. Due to oriC incompatibility, plasmid loss occurred spontaneously when selection pressure was removed. This approach will be helpful for constructing unmarked mutations and generating multiple mutants with the same selection marker in S. citri. It should also be relevant to other species of mollicutes.
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Affiliation(s)
- Sybille Duret
- UMR 1090 Génomique Développement et Pouvoir Pathogène, INRA, Université de Bordeaux 2, Centre INRA de Bordeaux, 71 avenue Edouard Bourlaux, BP 81, 33883 Villenave d'Ornon Cedex, France
| | - Aurélie André
- UMR 1090 Génomique Développement et Pouvoir Pathogène, INRA, Université de Bordeaux 2, Centre INRA de Bordeaux, 71 avenue Edouard Bourlaux, BP 81, 33883 Villenave d'Ornon Cedex, France
| | - Joël Renaudin
- UMR 1090 Génomique Développement et Pouvoir Pathogène, INRA, Université de Bordeaux 2, Centre INRA de Bordeaux, 71 avenue Edouard Bourlaux, BP 81, 33883 Villenave d'Ornon Cedex, France
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17
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Christensen NM, Axelsen KB, Nicolaisen M, Schulz A. Phytoplasmas and their interactions with hosts. TRENDS IN PLANT SCIENCE 2005; 10:526-35. [PMID: 16226054 DOI: 10.1016/j.tplants.2005.09.008] [Citation(s) in RCA: 100] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2005] [Revised: 08/08/2005] [Accepted: 09/28/2005] [Indexed: 05/03/2023]
Abstract
Phytoplasmas are bacteria without cell walls and are responsible for plant diseases that have large economic impacts. Knowledge of their biology is limited because they are uncultivable and experimentally inaccessible in their hosts. It is a mystery how these bacteria use the sugar-rich phloem sap in which they live and how they interact with the host. This makes it difficult to develop means to control them. Recently, the full genomes of two phytoplasmas have been sequenced, allowing new insights into their requirements. Phytoplasmas contain a minimal genome and lack genes coding for ATP synthases and sugar uptake and use, making them dependent on their host. This dependency can be exploited to elucidate the particular physiology of the phloem.
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Affiliation(s)
- Nynne M Christensen
- Department of Plant Biology, The Royal Veterinary and Agricultural University, Thorvaldsensvej 40, DK-1871 Frederiksberg C, Copenhagen, Denmark
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18
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André A, Maucourt M, Moing A, Rolin D, Renaudin J. Sugar import and phytopathogenicity of Spiroplasma citri: glucose and fructose play distinct roles. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2005; 18:33-42. [PMID: 15672816 DOI: 10.1094/mpmi-18-0033] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
We have shown previously that the glucose PTS (phosphotransferase system) permease enzyme II of Spiroplasma citri is split into two distinct polypeptides, which are encoded by two separate genes, crr and ptsG. A S. citri mutant was obtained by disruption of ptsG through homologous recombination and was proved unable to import glucose. The ptsG mutant (GII3-glc1) was transmitted to periwinkle (Catharanthus roseus) plants through injection to the leaf-hopper vector. In contrast to the previously characterized fructose operon mutant GMT 553, which was found virtually nonpathogenic, the ptsG mutant GII3-glc1 induced severe symptoms similar to those induced by the wild-type strain GII-3. These results, indicating that fructose and glucose utilization were not equally involved in pathogenicity, were consistent with biochemical data showing that, in the presence of both sugars, S. citri used fructose preferentially. Proton nuclear magnetic resonance analyses of carbohydrates in plant extracts revealed the accumulation of soluble sugars, particularly glucose, in plants infected by S. citri GII-3 or GII3-glc1 but not in those infected by GMT 553. From these data, a hypothetical model was proposed to establish the relationship between fructose utilization by the spiroplasmas present in the phloem sieve tubes and glucose accumulation in the leaves of S. citri infected plants.
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Affiliation(s)
- Aurélie André
- UMR 1090 Génomique Développement et Pouvoir Pathogene, INRA, Université de Bordeaux 2, Centre INRA de Bordeaux, B.P. 81, 33883 Villenave d'Ornon Cedex, France
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