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Clark DG, Beiran M. Structure of activity in multiregion recurrent neural networks. Proc Natl Acad Sci U S A 2025; 122:e2404039122. [PMID: 40053363 PMCID: PMC11912375 DOI: 10.1073/pnas.2404039122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Accepted: 02/07/2025] [Indexed: 03/12/2025] Open
Abstract
Neural circuits comprise multiple interconnected regions, each with complex dynamics. The interplay between local and global activity is thought to underlie computational flexibility, yet the structure of multiregion neural activity and its origins in synaptic connectivity remain poorly understood. We investigate recurrent neural networks with multiple regions, each containing neurons with random and structured connections. Inspired by experimental evidence of communication subspaces, we use low-rank connectivity between regions to enable selective activity routing. These networks exhibit high-dimensional fluctuations within regions and low-dimensional signal transmission between them. Using dynamical mean-field theory, with cross-region currents as order parameters, we show that regions act as both generators and transmitters of activity-roles that are often in tension. Taming within-region activity can be crucial for effective signal routing. Unlike previous models that suppressed neural activity to control signal flow, our model achieves routing by exciting different high-dimensional activity patterns through connectivity structure and nonlinear dynamics. Our analysis of this disordered system offers insights into multiregion neural data and trained neural networks.
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Affiliation(s)
- David G. Clark
- Zuckerman Institute, Columbia University, New York, NY10027
- Kavli Institute for Brain Science, Columbia University, New York, NY10027
| | - Manuel Beiran
- Zuckerman Institute, Columbia University, New York, NY10027
- Kavli Institute for Brain Science, Columbia University, New York, NY10027
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Gonzalez J, Torterolo P, Bolding KA, Tort AB. Communication subspace dynamics of the canonical olfactory pathway. iScience 2024; 27:111275. [PMID: 39628563 PMCID: PMC11613203 DOI: 10.1016/j.isci.2024.111275] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2024] [Revised: 08/08/2024] [Accepted: 10/25/2024] [Indexed: 12/06/2024] Open
Abstract
Understanding how different brain areas communicate is crucial for elucidating the mechanisms underlying cognition. A possible way for neural populations to interact is through a communication subspace, a specific region in the state-space enabling the transmission of behaviorally relevant spiking patterns. In the olfactory system, it remains unclear if different populations employ such a mechanism. Our study reveals that neuronal ensembles in the main olfactory pathway (olfactory bulb to olfactory cortex) interact through a communication subspace, which is driven by nasal respiration and allows feedforward and feedback transmission to occur segregated along the sniffing cycle. Moreover, our results demonstrate that subspace communication depends causally on the activity of both areas, is hindered during anesthesia, and transmits a low-dimensional representation of odor.
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Affiliation(s)
- Joaquín Gonzalez
- Departamento de Fisiología, Facultad de Medicina, Universidad de la República, Montevideo 11200, Uruguay
- Brain Institute, Federal University of Rio Grande do Norte, Natal, RN 59078, Brazil
| | - Pablo Torterolo
- Departamento de Fisiología, Facultad de Medicina, Universidad de la República, Montevideo 11200, Uruguay
| | | | - Adriano B.L. Tort
- Brain Institute, Federal University of Rio Grande do Norte, Natal, RN 59078, Brazil
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Weiss O, Coen-Cagli R. Measuring Stimulus Information Transfer Between Neural Populations through the Communication Subspace. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.11.06.622283. [PMID: 39574567 PMCID: PMC11580955 DOI: 10.1101/2024.11.06.622283] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 03/26/2025]
Abstract
Sensory processing arises from the communication between neural populations across multiple brain areas. While the widespread presence of neural response variability shared throughout a neural population limits the amount of stimulus-related information those populations can accurately represent, how this variability affects the interareal communication of sensory information is unknown. We propose a mathematical framework to understand the impact of neural population response variability on sensory information transmission. We combine linear Fisher information, a metric connecting stimulus representation and variability, with the framework of communication subspaces, which suggests that functional mappings between cortical populations are low-dimensional relative to the space of population activity patterns. From this, we partition Fisher information depending on the alignment between the population covariance and the mean tuning direction projected onto the communication subspace or its orthogonal complement. We provide mathematical and numerical analyses of our proposed decomposition of Fisher information and examine theoretical scenarios that demonstrate how to leverage communication subspaces for flexible routing and gating of stimulus information. This work will provide researchers investigating interareal communication with a theoretical lens through which to understand sensory information transmission and guide experimental design.
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Affiliation(s)
- Oren Weiss
- Department of Systems and Computational Biology, Albert Einstein College of Medicine, Bronx, NY 10461, USA
- Dominick P. Purpura Department of Neuroscience, Albert Einstein College of Medicine, Bronx, NY 10461, USA
| | - Ruben Coen-Cagli
- Department of Systems and Computational Biology, Albert Einstein College of Medicine, Bronx, NY 10461, USA
- Dominick P. Purpura Department of Neuroscience, Albert Einstein College of Medicine, Bronx, NY 10461, USA
- Department of Ophthalmology and Visual Sciences, Albert Einstein College of Medicine, Bronx, NY 10461, USA
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Young RA, Shin JD, Guo Z, Jadhav SP. Hippocampal-prefrontal communication subspaces align with behavioral and network patterns in a spatial memory task. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.07.08.601617. [PMID: 39026752 PMCID: PMC11257456 DOI: 10.1101/2024.07.08.601617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/20/2024]
Abstract
Rhythmic network states have been theorized to facilitate communication between brain regions, but how these oscillations influence communication subspaces, i.e, the low-dimensional neural activity patterns that mediate inter-regional communication, and in turn how subspaces impact behavior remains unclear. Using a spatial memory task in rats, we simultaneously recorded ensembles from hippocampal CA1 and the prefrontal cortex (PFC) to address this question. We found that task behaviors best aligned with low-dimensional, shared subspaces between these regions, rather than local activity in either region. Critically, both network oscillations and speed modulated the structure and performance of this communication subspace. Contrary to expectations, theta coherence did not better predict CA1-PFC shared activity, while theta power played a more significant role. To understand the communication space, we visualized shared CA1-PFC communication geometry using manifold techniques and found ring-like structures. We hypothesize that these shared activity manifolds are utilized to mediate the task behavior. These findings suggest that memory-guided behaviors are driven by shared CA1-PFC interactions that are dynamically modulated by oscillatory states, offering a novel perspective on the interplay between rhythms and behaviorally relevant neural communication.
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Abstract
Cognition relies on the flexible organization of neural activity. In this discussion, we explore how many aspects of this organization can be described as emergent properties, not reducible to their constituent parts. We discuss how electrical fields in the brain can serve as a medium for propagating activity nearly instantaneously, and how population-level patterns of neural activity can organize computations through subspace coding.
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Affiliation(s)
- Earl K Miller
- The Picower Institute for Learning & Memory and Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Scott L Brincat
- The Picower Institute for Learning & Memory and Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Jefferson E Roy
- The Picower Institute for Learning & Memory and Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
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Tafazoli S, Bouchacourt FM, Ardalan A, Markov NT, Uchimura M, Mattar MG, Daw ND, Buschman TJ. Building compositional tasks with shared neural subspaces. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.01.31.578263. [PMID: 38352540 PMCID: PMC10862921 DOI: 10.1101/2024.01.31.578263] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/22/2024]
Abstract
Cognition is remarkably flexible; we are able to rapidly learn and perform many different tasks1. Theoretical modeling has shown artificial neural networks trained to perform multiple tasks will re-use representations2 and computational components3 across tasks. By composing tasks from these sub-components, an agent can flexibly switch between tasks and rapidly learn new tasks4. Yet, whether such compositionality is found in the brain is unknown. Here, we show the same subspaces of neural activity represent task-relevant information across multiple tasks, with each task compositionally combining these subspaces in a task-specific manner. We trained monkeys to switch between three compositionally related tasks. Neural recordings found task-relevant information about stimulus features and motor actions were represented in subspaces of neural activity that were shared across tasks. When monkeys performed a task, neural representations in the relevant shared sensory subspace were transformed to the relevant shared motor subspace. Subspaces were flexibly engaged as monkeys discovered the task in effect; their internal belief about the current task predicted the strength of representations in task-relevant subspaces. In sum, our findings suggest that the brain can flexibly perform multiple tasks by compositionally combining task-relevant neural representations across tasks.
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Affiliation(s)
- Sina Tafazoli
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | | | - Adel Ardalan
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | - Nikola T. Markov
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | - Motoaki Uchimura
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
| | | | - Nathaniel D. Daw
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
- Department of Psychology, Princeton University, Princeton, NJ, USA
| | - Timothy J. Buschman
- Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA
- Department of Psychology, Princeton University, Princeton, NJ, USA
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