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El-Sappah AH, Yan K, Huang Q, Islam MM, Li Q, Wang Y, Khan MS, Zhao X, Mir RR, Li J, El-Tarabily KA, Abbas M. Comprehensive Mechanism of Gene Silencing and Its Role in Plant Growth and Development. FRONTIERS IN PLANT SCIENCE 2021; 12:705249. [PMID: 34589097 PMCID: PMC8475493 DOI: 10.3389/fpls.2021.705249] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Accepted: 08/10/2021] [Indexed: 05/19/2023]
Abstract
Gene silencing is a negative feedback mechanism that regulates gene expression to define cell fate and also regulates metabolism and gene expression throughout the life of an organism. In plants, gene silencing occurs via transcriptional gene silencing (TGS) and post-transcriptional gene silencing (PTGS). TGS obscures transcription via the methylation of 5' untranslated region (5'UTR), whereas PTGS causes the methylation of a coding region to result in transcript degradation. In this review, we summarized the history and molecular mechanisms of gene silencing and underlined its specific role in plant growth and crop production.
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Affiliation(s)
- Ahmed H. El-Sappah
- School of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China
- Genetics Department, Faculty of Agriculture, Zagazig University, Zagazig, Egypt
- Key Laboratory of Sichuan Province for Refining Sichuan Tea, Yibin, China
| | - Kuan Yan
- School of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China
- Key Laboratory of Sichuan Province for Refining Sichuan Tea, Yibin, China
| | - Qiulan Huang
- School of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China
- Key Laboratory of Sichuan Province for Refining Sichuan Tea, Yibin, China
- College of Tea Science, Yibin University, Yibin, China
| | | | - Quanzi Li
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, China
- Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
| | - Yu Wang
- School of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China
- Key Laboratory of Sichuan Province for Refining Sichuan Tea, Yibin, China
| | - Muhammad Sarwar Khan
- Center of Agriculture Biochemistry and Biotechnology, University of Agriculture, Faisalabad, Pakistan
| | - Xianming Zhao
- School of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China
- Key Laboratory of Sichuan Province for Refining Sichuan Tea, Yibin, China
| | - Reyazul Rouf Mir
- Division of Genetics and Plant Breeding, Faculty of Agriculture (FoA), Sher-e-Kashmir University of Agricultural Sciences and Technology (SKUAST–K), Sopore, India
| | - Jia Li
- School of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China
- Key Laboratory of Sichuan Province for Refining Sichuan Tea, Yibin, China
| | - Khaled A. El-Tarabily
- Department of Biology, College of Science, United Arab Emirates University, Al-Ain, United Arab Emirates
- Harry Butler Institute, Murdoch University, Murdoch, WA, Australia
| | - Manzar Abbas
- School of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, China
- Key Laboratory of Sichuan Province for Refining Sichuan Tea, Yibin, China
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Mihalyuk AN, Hsing CR, Wei CM, Eremeev SV, Bondarenko LV, Tupchaya AY, Gruznev DV, Zotov AV, Saranin AA. (Tl, Au)/Si(1 1 1)[Formula: see text] 2D compound: an ordered array of identical Au clusters embedded in Tl matrix. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2018; 30:025002. [PMID: 29186009 DOI: 10.1088/1361-648x/aa9e2d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Formation of the highly-ordered [Formula: see text]-periodicity 2D compound has been detected in the (Tl, Au)/Si(1 1 1) system as a result of Au deposition onto the Tl/Si(1 1 1) surface, its composition, structure and electronic properties have been characterized using scanning tunneling microscopy, angle-resolved photoelectron spectroscopy and density-functional-theory calculations. On the basis of these data, the structural model of the Tl-Au compound has been proposed, which adopts 12 Tl atoms and 10 Au atoms (in total, 22 atoms) per [Formula: see text] unit cell, i.e. ∼1.71 ML of Tl and ∼1.43 ML of Au (in total, ∼3.14 ML). Qualitatively, the model can be visualized as consisting of truncated-pyramid-like Au clusters with a Tl atom on top, while the other Tl atoms form a double layer around the Au clusters. The (Tl, Au)/Si(1 1 1)[Formula: see text] compound has been found to exhibit pronounced metallic properties at least down to temperatures as low as ∼25 K, which makes it a promising object for studying electrical transport phenomena in the 2D metallic systems.
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Affiliation(s)
- A N Mihalyuk
- Institute of Automation and Control Processes FEB RAS, 5 Radio Street, 690041 Vladivostok, Russia. School of Natural Sciences, Far Eastern Federal University, 690950 Vladivostok, Russia
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Gruznev DV, Bondarenko LV, Matetskiy AV, Yakovlev AA, Tupchaya AY, Eremeev SV, Chulkov EV, Chou JP, Wei CM, Lai MY, Wang YL, Zotov AV, Saranin AA. A strategy to create spin-split metallic bands on silicon using a dense alloy layer. Sci Rep 2014; 4:4742. [PMID: 24752038 PMCID: PMC3994439 DOI: 10.1038/srep04742] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2014] [Accepted: 03/28/2014] [Indexed: 11/25/2022] Open
Abstract
To exploit Rashba effect in a 2D electron gas on silicon surface for spin transport, it is necessary to have surface reconstruction with spin-split metallic surface-state bands. However, metals with strong spin-orbit coupling (e.g., Bi, Tl, Sb, Pt) induce reconstructions on silicon with almost exclusively spin-split insulating bands. We propose a strategy to create spin-split metallic bands using a dense 2D alloy layer containing a metal with strong spin-orbit coupling and another metal to modify the surface reconstruction. Here we report two examples, i.e., alloying reconstruction with Na and Tl/Si(111)1 × 1 reconstruction with Pb. The strategy provides a new paradigm for creating metallic surface state bands with various spin textures on silicon and therefore enhances the possibility to integrate fascinating and promising capabilities of spintronics with current semiconductor technology.
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Affiliation(s)
- Dimitry V Gruznev
- 1] Institute of Automation and Control Processes FEB RAS, 690041 Vladivostok, Russia [2] Far Eastern Federal University, School of Natural Sciences, 690950 Vladivostok, Russia
| | - Leonid V Bondarenko
- 1] Institute of Automation and Control Processes FEB RAS, 690041 Vladivostok, Russia [2] Far Eastern Federal University, School of Natural Sciences, 690950 Vladivostok, Russia
| | - Andrey V Matetskiy
- 1] Institute of Automation and Control Processes FEB RAS, 690041 Vladivostok, Russia [2] Far Eastern Federal University, School of Natural Sciences, 690950 Vladivostok, Russia
| | - Alexey A Yakovlev
- Institute of Automation and Control Processes FEB RAS, 690041 Vladivostok, Russia
| | - Alexandra Y Tupchaya
- Institute of Automation and Control Processes FEB RAS, 690041 Vladivostok, Russia
| | - Sergey V Eremeev
- 1] Institute of Strength Physics and Materials Science, 634021 Tomsk, Russia [2] Tomsk State University, 634050 Tomsk, Russia
| | - Evgeniy V Chulkov
- 1] Tomsk State University, 634050 Tomsk, Russia [2] Donostia International Physics Center (DIPC), 20018 San Sebastían/Donostia, Basque Country, Spain [3] Departamento de Física de Materiales UPV/EHU, CFM-MPC and Centro Mixto CSIC-UPV/EHU, 20080 San Sebastían/Donostia, Basque Country, Spain
| | - Jyh-Pin Chou
- Institute of Atomic and Molecular Sciences, Academia SinicaP.O. Box 23-166 Taipei, Taiwan
| | - Ching-Ming Wei
- Institute of Atomic and Molecular Sciences, Academia SinicaP.O. Box 23-166 Taipei, Taiwan
| | - Ming-Yu Lai
- Institute of Atomic and Molecular Sciences, Academia SinicaP.O. Box 23-166 Taipei, Taiwan
| | - Yuh-Lin Wang
- Institute of Atomic and Molecular Sciences, Academia SinicaP.O. Box 23-166 Taipei, Taiwan
| | - Andrey V Zotov
- 1] Institute of Automation and Control Processes FEB RAS, 690041 Vladivostok, Russia [2] Far Eastern Federal University, School of Natural Sciences, 690950 Vladivostok, Russia [3] Department of Electronics, Vladivostok State University of Economics and Service, 690600 Vladivostok, Russia
| | - Alexander A Saranin
- 1] Institute of Automation and Control Processes FEB RAS, 690041 Vladivostok, Russia [2] Far Eastern Federal University, School of Natural Sciences, 690950 Vladivostok, Russia
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Gruznev DV, Matetskiy AV, Bondarenko LV, Utas OA, Zotov AV, Saranin AA, Chou JP, Wei CM, Lai MY, Wang YL. Stepwise self-assembly of C₆₀ mediated by atomic scale moiré magnifiers. Nat Commun 2013; 4:1679. [PMID: 23575683 DOI: 10.1038/ncomms2706] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2012] [Accepted: 03/06/2013] [Indexed: 11/09/2022] Open
Abstract
Self-assembly of atoms or molecules on a crystal surface is considered one of the most promising methods to create molecular devices. Here we report a stepwise self-assembly of C₆₀ molecules into islands with unusual shapes and preferred sizes on a gold-indium-covered Si(111) surface. Specifically, 19-mer islands prefer a non-compact boomerang shape, whereas hexagonal 37-mer islands exhibit extraordinarily enhanced stability and abundance. The stepwise self-assembly is mediated by the moiré interference between an island with its underlying lattice, which essentially maps out the adsorption-energy landscape of a C₆₀ on different positions of the surface with a lateral magnification factor and dictates the probability for the subsequent attachment of C₆₀ to an island's periphery. Our discovery suggests a new method for exploiting the moiré interference to dynamically assist the self-assembly of particles and provides an unexplored tactic of engineering atomic scale moiré magnifiers to facilitate the growth of monodispersed mesoscopic structures.
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Affiliation(s)
- D V Gruznev
- Institute of Automation and Control Processes, Vladivostok 690041, Russia
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