Topological extension of the isomorph theory based on the Shannon entropy

Linking excess entropy and acentric factor in spherical fluids

Introduced by Pitzer in 1955, the acentric factor (ω) has been used to evaluate a molecule's deviation from the corresponding state principle. Pitzer devised ω based on a concept called perfect liquid (or centric fluid), a hypothetical species perfectly adhering to this principle. However, its physical significance remains unclear. This work attempts to clarify the centric fluid from an excess entropy perspective. We observe that the excess entropy per particle of centric fluids approximates -kB at their critical points, akin to the communal entropy of an ideal gas in classical cell theory. We devise an excess entropy dissection and apply it to model fluids (square-well, Lennard-Jones, Mie n-6, and the two-body ab initio models) to interpret this similarity. The dissection method identifies both centricity-independent and centricity-dependent entropic features. Regardless of the acentric factor, the attractive interaction contribution to the excess entropy peaks at the density where local density is most enhanced due to the competition between the local attraction and critical fluctuations. However, only in centric fluids does the entropic contribution from the local attractive potential become comparable to that of the hard sphere exclusion, making the centric fluid more structured than acentric ones. These findings elucidate the physical significance of the centric fluid as a system of particles where the repulsive and attractive contributions to the excess entropy become equal at its gas-liquid criticality. We expect these findings to offer a way to find suitable intermolecular potentials and assess the physical adequacy of equations of state.

Excess entropy scaling law: A potential energy landscape view

The relationship between excess entropy and diffusion is revisited by means of large-scale computer simulation combined to supervised learning approach to determine the excess entropy for the Lennard-Jones potential. Results reveal a strong correlation with the properties of the potential energy landscape (PEL). In particular the exponential law holding in the liquid is seen to be linked with the landscape-influenced regime of the PEL whereas the fluidlike power-law corresponds to the free diffusion regime.

Extreme case of density scaling: The Weeks-Chandler-Andersen system at low temperatures

This paper studies numerically the Weeks-Chandler-Andersen system, which is shown to obey hidden scale invariance with a density-scaling exponent that varies from below 5 to above 500. This unprecedented variation makes it advantageous to use the fourth-order Runge-Kutta algorithm for tracing out isomorphs. Good isomorph invariance of structure and dynamics is observed over more than three orders of magnitude temperature variation. For all state points studied, the virial potential-energy correlation coefficient and the density-scaling exponent are controlled mainly by the temperature. Based on the assumption of statistically independent pair interactions, a mean-field theory is developed that rationalizes this finding and provides an excellent fit to data at low temperatures.

Dynamic Crossover in Fluids: From Hard Spheres to Molecules

We propose a simple and generic definition of a demarcation reconciling structural and dynamic frameworks when combined with the entropy scaling framework. This crossover line between gas- and liquid-like behaviors is defined as the curve for which an individual property, the contribution to viscosity due to molecules' translation, is exactly equal to a collective property, the contribution to viscosity due to molecular interactions. Such a definition is shown to be consistent with the one based on the minima of the kinematic viscosity. For the hard sphere, this is shown to be an exact solution. For Lennard-Jones spheres and dimers and for some simple real fluids, this relation holds very well. This crossover line passes nearby the critical point, and for all studied fluids, it is well captured by the critical excess entropy curve for atomic fluids, emphasizing the link between transport properties and local structure.

Topological Metric Detects Hidden Order in Disordered Media

Recent advances in microscopy techniques make it possible to study the growth, dynamics, and response of complex biophysical systems at single-cell resolution, from bacterial communities to tissues and organoids. In contrast to ordered crystals, it is less obvious how one can reliably distinguish two amorphous yet structurally different cellular materials. Here, we introduce a topological earth mover's (TEM) distance between disordered structures that compares local graph neighborhoods of the microscopic cell-centroid networks. Leveraging structural information contained in the neighborhood motif distributions, the TEM metric allows an interpretable reconstruction of equilibrium and nonequilibrium phase spaces and embedded pathways from static system snapshots alone. Applied to cell-resolution imaging data, the framework recovers time ordering without prior knowledge about the underlying dynamics, revealing that fly wing development solves a topological optimal transport problem. Extending our topological analysis to bacterial swarms, we find a universal neighborhood size distribution consistent with a Tracy-Widom law.

Isomorph theory beyond thermal equilibrium

This paper generalizes isomorph theory to systems that are not in thermal equilibrium. The systems are assumed to be R-simple, i.e., to have a potential energy that as a function of all particle coordinates R obeys the hidden-scale-invariance condition U(R_a) < U(R_b) ⇒ U(λR_a) < U(λR_b). "Systemic isomorphs" are introduced as lines of constant excess entropy in the phase diagram defined by density and systemic temperature, which is the temperature of the equilibrium state point with the average potential energy equal to U(R). The dynamics is invariant along a systemic isomorph if there is a constant ratio between the systemic and the bath temperature. In thermal equilibrium, the systemic temperature is equal to the bath temperature and the original isomorph formalism is recovered. The new approach rationalizes within a consistent framework previously published observations of isomorph invariance in simulations involving nonlinear steady-state shear flows, zero-temperature plastic flows, and glass-state isomorphs. This paper relates briefly to granular media, physical aging, and active matter. Finally, we discuss the possibility that the energy unit defining the reduced quantities should be based on the systemic rather than the bath temperature.

Thermodynamics, dynamics, and structure of supercritical water at extreme conditions

Molecular dynamics (MD) simulations to understand the thermodynamic, dynamic, and structural changes in supercritical water across the Frenkel line and the melting line have been performed.