1
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Lutsko JF, Schoonen C. A microscopic approach to crystallization: Challenging the classical/non-classical dichotomy. J Chem Phys 2024; 161:104502. [PMID: 39254162 DOI: 10.1063/5.0225658] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2024] [Accepted: 08/26/2024] [Indexed: 09/11/2024] Open
Abstract
We present a fundamental framework for the study of crystallization based on a combination of classical density functional theory and fluctuating hydrodynamics that is free of any assumptions regarding order parameters and that requires no input other than molecular interaction potentials. We use it to study the nucleation of both droplets and crystalline solids from a low-concentration solution of colloidal particles using two different interaction potentials. We find that the nucleation pathways of both droplets and crystals are remarkably similar at the early stages of nucleation until they diverge due to a rapid ordering along the solid pathways in line with the paradigm of "non-classical" crystallization. We compute the unstable modes at the critical clusters and find that despite the non-classical nature of solid nucleation, the size of the nucleating clusters remains the principle order parameter in all cases, supporting a "classical" description of the dynamics of crystallization. We show that nucleation rates can be extracted from our formalism in a systematic way. Our results suggest that in some cases, despite the non-classical nature of the nucleation pathways, classical nucleation theory can give reasonable results for solids but that there are circumstances where it may fail. This contributes a nuanced perspective to recent experimental and simulation work, suggesting that important aspects of crystal nucleation can be described within a classical framework.
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Affiliation(s)
- James F Lutsko
- Center for Nonlinear Phenomena and Complex Systems CP 231, Université Libre de Bruxelles, Blvd. du Triomphe, 1050 Brussels, Belgium
| | - Cédric Schoonen
- Center for Nonlinear Phenomena and Complex Systems CP 231, Université Libre de Bruxelles, Blvd. du Triomphe, 1050 Brussels, Belgium
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2
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Te Vrugt M, Frohoff-Hülsmann T, Heifetz E, Thiele U, Wittkowski R. From a microscopic inertial active matter model to the Schrödinger equation. Nat Commun 2023; 14:1302. [PMID: 36894573 PMCID: PMC9998892 DOI: 10.1038/s41467-022-35635-1] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Accepted: 12/14/2022] [Indexed: 03/11/2023] Open
Abstract
Active field theories, such as the paradigmatic model known as 'active model B+', are simple yet very powerful tools for describing phenomena such as motility-induced phase separation. No comparable theory has been derived yet for the underdamped case. In this work, we introduce active model I+, an extension of active model B+ to particles with inertia. The governing equations of active model I+ are systematically derived from the microscopic Langevin equations. We show that, for underdamped active particles, thermodynamic and mechanical definitions of the velocity field no longer coincide and that the density-dependent swimming speed plays the role of an effective viscosity. Moreover, active model I+ contains an analog of the Schrödinger equation in Madelung form as a limiting case, allowing one to find analoga of the quantum-mechanical tunnel effect and of fuzzy dark matter in active fluids. We investigate the active tunnel effect analytically and via numerical continuation.
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Affiliation(s)
- Michael Te Vrugt
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, 48149, Münster, Germany
- Center for Soft Nanoscience (SoN), Westfälische Wilhelms-Universität Münster, 48149, Münster, Germany
| | - Tobias Frohoff-Hülsmann
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, 48149, Münster, Germany
| | - Eyal Heifetz
- Porter School of the Environment and Earth Sciences, Tel Aviv University, 69978, Tel Aviv, Israel
| | - Uwe Thiele
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, 48149, Münster, Germany.
- Center for Nonlinear Science (CeNoS), Westfälische Wilhelms-Universität Münster, 48149, Münster, Germany.
- Center for Multiscale Theory and Computation (CMTC), Westfälische Wilhelms-Universität Münster, 48149, Münster, Germany.
| | - Raphael Wittkowski
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, 48149, Münster, Germany.
- Center for Soft Nanoscience (SoN), Westfälische Wilhelms-Universität Münster, 48149, Münster, Germany.
- Center for Nonlinear Science (CeNoS), Westfälische Wilhelms-Universität Münster, 48149, Münster, Germany.
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3
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Abstract
Matter self-assembling into layers generates unique properties, including structures of stacked surfaces, directed transport, and compact area maximization that can be highly functionalized in biology and technology. Smectics represent the paradigm of such lamellar materials - they are a state between fluids and solids, characterized by both orientational and partial positional ordering in one layering direction, making them notoriously difficult to model, particularly in confining geometries. We propose a complex tensor order parameter to describe the local degree of lamellar ordering, layer displacement and orientation of the layers for simple, lamellar smectics. The theory accounts for both dislocations and disclinations, by regularizing singularities within defect cores and so remaining continuous everywhere. The ability to describe disclinations and dislocation allows this theory to simulate arrested configurations and inclusion-induced local ordering. This tensorial theory for simple smectics considerably simplifies numerics, facilitating studies on the mesoscopic structure of topologically complex systems.
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4
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Te Vrugt M, Wittkowski R. Perspective: New directions in dynamical density functional theory. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2022; 35:041501. [PMID: 35917827 DOI: 10.1088/1361-648x/ac8633] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2022] [Accepted: 08/01/2022] [Indexed: 06/15/2023]
Abstract
Classical dynamical density functional theory (DDFT) has become one of the central modeling approaches in nonequilibrium soft matter physics. Recent years have seen the emergence of novel and interesting fields of application for DDFT. In particular, there has been a remarkable growth in the amount of work related to chemistry. Moreover, DDFT has stimulated research on other theories such as phase field crystal models and power functional theory. In this perspective, we summarize the latest developments in the field of DDFT and discuss a variety of possible directions for future research.
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Affiliation(s)
- Michael Te Vrugt
- Institut für Theoretische Physik, Center for Soft Nanoscience, Westfälische Wilhelms-Universität Münster, 48149 Münster, Germany
| | - Raphael Wittkowski
- Institut für Theoretische Physik, Center for Soft Nanoscience, Westfälische Wilhelms-Universität Münster, 48149 Münster, Germany
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5
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Steinberg AB, Maucher F, Gurevich SV, Thiele U. Exploring bifurcations in Bose-Einstein condensates via phase field crystal models. CHAOS (WOODBURY, N.Y.) 2022; 32:113112. [PMID: 36456347 DOI: 10.1063/5.0101401] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Accepted: 10/03/2022] [Indexed: 06/17/2023]
Abstract
To facilitate the analysis of pattern formation and the related phase transitions in Bose-Einstein condensates, we present an explicit approximate mapping from the nonlocal Gross-Pitaevskii equation with cubic nonlinearity to a phase field crystal (PFC) model. This approximation is valid close to the superfluid-supersolid phase transition boundary. The simplified PFC model permits the exploration of bifurcations and phase transitions via numerical path continuation employing standard software. While revealing the detailed structure of the bifurcations present in the system, we demonstrate the existence of localized states in the PFC approximation. Finally, we discuss how higher-order nonlinearities change the structure of the bifurcation diagram representing the transitions found in the system.
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Affiliation(s)
- A B Steinberg
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Strasse 9, 48149 Münster, Germany
| | - F Maucher
- Departament de Física, Universitat de les Illes Balears and IAC-3, Campus UIB, E-07122 Palma de Mallorca, Spain
| | - S V Gurevich
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Strasse 9, 48149 Münster, Germany
| | - U Thiele
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Strasse 9, 48149 Münster, Germany
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6
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Archer AJ, Dotera T, Rucklidge AM. Rectangle-triangle soft-matter quasicrystals with hexagonal symmetry. Phys Rev E 2022; 106:044602. [PMID: 36397536 DOI: 10.1103/physreve.106.044602] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Accepted: 08/03/2022] [Indexed: 06/16/2023]
Abstract
Aperiodic (quasicrystalline) tilings, such as Penrose's tiling, can be built up from, e.g., kites and darts, squares and equilateral triangles, rhombi- or shield-shaped tiles, and can have a variety of different symmetries. However, almost all quasicrystals occurring in soft matter are of the dodecagonal type. Here we investigate a class of aperiodic tilings with hexagonal symmetry that are based on rectangles and two types of equilateral triangles. We show how to design soft-matter systems of particles interacting via pair potentials containing two length scales that form aperiodic stable states with two different examples of rectangle-triangle tilings. One of these is the bronze-mean tiling, while the other is a generalization. Our work points to how more general (beyond dodecagonal) quasicrystals can be designed in soft matter.
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Affiliation(s)
- Andrew J Archer
- Department of Mathematical Sciences and Interdisciplinary Centre for Mathematical Modelling, Loughborough University, Loughborough, Leicestershire LE11 3TU, United Kingdom
| | - Tomonari Dotera
- Department of Physics, Kindai University, 3-4-1 Kowakae Higashi, Osaka 577-8502, Japan
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7
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Li AB, Miroshnik L, Rummel BD, Balakrishnan G, Han SM, Sinno T. A unified theory of free energy functionals and applications to diffusion. Proc Natl Acad Sci U S A 2022; 119:e2203399119. [PMID: 35648830 PMCID: PMC9191674 DOI: 10.1073/pnas.2203399119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2022] [Accepted: 04/20/2022] [Indexed: 11/18/2022] Open
Abstract
SignificanceThe free energy functional is a central component of continuum dynamical models used to describe phase transitions, microstructural evolution, and pattern formation. However, despite the success of these models in many areas of physics, chemistry, and biology, the standard free energy frameworks are frequently characterized by physically opaque parameters and incorporate assumptions that are difficult to assess. Here, we introduce a mathematical formalism that provides a unifying umbrella for constructing free energy functionals. We show that Ginzburg-Landau framework is a special case of this umbrella and derive a generalization of the widely employed Cahn-Hilliard equation. More broadly, we expect the framework will also be useful for generalizing higher-order theories, establishing formal connections to microscopic physics, and coarse graining.
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Affiliation(s)
- Andrew B. Li
- Physics and Astronomy, University of Pennsylvania, Philadelphia, PA 19146
| | - Leonid Miroshnik
- Chemical & Biological Engineering, University of New Mexico, Albuquerque, NM 87131
| | - Brian D. Rummel
- Chemical & Biological Engineering, University of New Mexico, Albuquerque, NM 87131
| | - Ganesh Balakrishnan
- Center for High Technology Materials, University of New Mexico, Albuquerque, NM 87131
| | - Sang M. Han
- Chemical & Biological Engineering, University of New Mexico, Albuquerque, NM 87131
- Center for High Technology Materials, University of New Mexico, Albuquerque, NM 87131
| | - Talid Sinno
- Chemical & Biomolecular Engineering, University of Pennsylvania, Philadelphia, PA 19146
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8
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Ganguly S, Shrivastav GP, Lin SC, Häring J, Haussmann R, Kahl G, Oettel M, Fuchs M. Elasticity in crystals with a high density of local defects: Insights from ultra-soft colloids. J Chem Phys 2022; 156:064501. [DOI: 10.1063/5.0073624] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Saswati Ganguly
- Soft Condensed Matter Theory, Fachbereich Physik, Universität Konstanz, D-78457 Konstanz, Germany
| | | | - Shang-Chun Lin
- Institut für Angewandte Physik, Eberhard Karls Universität Tübingen, Auf der Morgenstelle 10, D-72076 Tübingen, Germany
| | - Johannes Häring
- Soft Condensed Matter Theory, Fachbereich Physik, Universität Konstanz, D-78457 Konstanz, Germany
| | - Rudolf Haussmann
- Soft Condensed Matter Theory, Fachbereich Physik, Universität Konstanz, D-78457 Konstanz, Germany
| | - Gerhard Kahl
- Institut für Theoretische Physik, TU Wien, Wiedner Hauptstrasse 8-10, A-1040 Wien, Austria
| | - Martin Oettel
- Institut für Angewandte Physik, Eberhard Karls Universität Tübingen, Auf der Morgenstelle 10, D-72076 Tübingen, Germany
| | - Matthias Fuchs
- Soft Condensed Matter Theory, Fachbereich Physik, Universität Konstanz, D-78457 Konstanz, Germany
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9
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Subramanian P, Ratliff DJ, Rucklidge AM, Archer AJ. Density Distribution in Soft Matter Crystals and Quasicrystals. PHYSICAL REVIEW LETTERS 2021; 126:218003. [PMID: 34114856 DOI: 10.1103/physrevlett.126.218003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2020] [Revised: 04/15/2021] [Accepted: 04/20/2021] [Indexed: 06/12/2023]
Abstract
The density distribution in solids is often represented as a sum of Gaussian peaks (or similar functions) centered on lattice sites or via a Fourier sum. Here, we argue that representing instead the logarithm of the density distribution via a Fourier sum is better. We show that truncating such a representation after only a few terms can be highly accurate for soft matter crystals. For quasicrystals, this sum does not truncate so easily, nonetheless, representing the density profile in this way is still of great use, enabling us to calculate the phase diagram for a three-dimensional quasicrystal-forming system using an accurate nonlocal density functional theory.
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Affiliation(s)
- P Subramanian
- Mathematical Institute, University of Oxford, Oxford OX2 6GG, United Kingdom
| | - D J Ratliff
- Department of Mathematical Sciences and Interdisciplinary Centre for Mathematical Modelling, Loughborough University, Loughborough LE11 3TU, United Kingdom
- Department of Mathematics, Physics and Electrical Engineering, Northumbria University, Newcastle upon Tyne NE1 8ST, United Kingdom
| | - A M Rucklidge
- School of Mathematics, University of Leeds, Leeds LS2 9JT, United Kingdom
| | - A J Archer
- Department of Mathematical Sciences and Interdisciplinary Centre for Mathematical Modelling, Loughborough University, Loughborough LE11 3TU, United Kingdom
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10
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Ophaus L, Knobloch E, Gurevich SV, Thiele U. Two-dimensional localized states in an active phase-field-crystal model. Phys Rev E 2021; 103:032601. [PMID: 33862772 DOI: 10.1103/physreve.103.032601] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2020] [Accepted: 02/08/2021] [Indexed: 11/07/2022]
Abstract
The active phase-field-crystal (active PFC) model provides a simple microscopic mean field description of crystallization in active systems. It combines the PFC model (or conserved Swift-Hohenberg equation) of colloidal crystallization and aspects of the Toner-Tu theory for self-propelled particles. We employ the active PFC model to study the occurrence of localized and periodic active crystals in two spatial dimensions. Due to the activity, crystalline states can undergo a drift instability and start to travel while keeping their spatial structure. Based on linear stability analyses, time simulations, and numerical continuation of the fully nonlinear states, we present a detailed analysis of the bifurcation structure of resting and traveling states. We explore, for instance, how the slanted homoclinic snaking of steady localized states found for the passive PFC model is modified by activity. Morphological phase diagrams showing the regions of existence of various solution types are presented merging the results from all the analysis tools employed. We also study how activity influences the crystal structure with transitions from hexagons to rhombic and stripe patterns. This in-depth analysis of a simple PFC model for active crystals and swarm formation provides a clear general understanding of the observed multistability and associated hysteresis effects, and identifies thresholds for qualitative changes in behavior.
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Affiliation(s)
- Lukas Ophaus
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Strasse 9, 48149 Münster, Germany.,Center of Nonlinear Science (CeNoS), Westfälische Wilhelms-Universität Münster, Corrensstrasse 2, 48149 Münster, Germany
| | - Edgar Knobloch
- Department of Physics, University of California, Berkeley, California 94720, USA
| | - Svetlana V Gurevich
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Strasse 9, 48149 Münster, Germany.,Center of Nonlinear Science (CeNoS), Westfälische Wilhelms-Universität Münster, Corrensstrasse 2, 48149 Münster, Germany
| | - Uwe Thiele
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Strasse 9, 48149 Münster, Germany.,Center of Nonlinear Science (CeNoS), Westfälische Wilhelms-Universität Münster, Corrensstrasse 2, 48149 Münster, Germany
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11
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Holl MP, Archer AJ, Thiele U. Efficient calculation of phase coexistence and phase diagrams: application to a binary phase-field-crystal model. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2021; 33:115401. [PMID: 33246322 DOI: 10.1088/1361-648x/abce6e] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
We show that one can employ well-established numerical continuation methods to efficiently calculate the phase diagram for thermodynamic systems described by a suitable free energy functional. In particular, this involves the determination of lines of phase coexistence related to first order phase transitions and the continuation of triple points. To illustrate the method we apply it to a binary phase-field-crystal model for the crystallisation of a mixture of two types of particles. The resulting phase diagram is determined for one- and two-dimensional domains. In the former case it is compared to the diagram obtained from a one-mode approximation. The various observed liquid and crystalline phases and their stable and metastable coexistence are discussed as well as the temperature-dependence of the phase diagrams. This includes the (dis)appearance of critical points and triple points. We also relate bifurcation diagrams for finite-size systems to the thermodynamics of phase transitions in the infinite-size limit.
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Affiliation(s)
- Max Philipp Holl
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm Klemm Str. 9, 48149 Münster, Germany
| | - Andrew J Archer
- Department of Mathematical Sciences, Loughborough University, Loughborough LE11 3TU, United Kingdom
- Interdisciplinary Centre for Mathematical Modelling, Loughborough University, Loughborough LE11 3TU, United Kingdom
| | - Uwe Thiele
- Institut für Theoretische Physik, Westfälische Wilhelms-Universität Münster, Wilhelm Klemm Str. 9, 48149 Münster, Germany
- Center of Nonlinear Science (CeNoS), Westfälische Wilhelms-Universität Münster, Corrensstr. 2, 48149 Münster, Germany
- Center for Multiscale Theory and Computation (CMTC), Westfälische Wilhelms-Universität, Corrensstr. 40, 48149 Münster, Germany
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12
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Garlaschi S, Gupta D, Maritan A, Azaele S. Ginzburg-Landau amplitude equation for nonlinear nonlocal models. Phys Rev E 2021; 103:022210. [PMID: 33736032 DOI: 10.1103/physreve.103.022210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Accepted: 01/21/2021] [Indexed: 11/07/2022]
Abstract
Regular spatial structures emerge in a wide range of different dynamics characterized by local and/or nonlocal coupling terms. In several research fields this has spurred the study of many models, which can explain pattern formation. The modulations of patterns, occurring on long spatial and temporal scales, cannot be captured by linear approximation analysis. Here, we show that, starting from a general model with long range couplings displaying patterns, the spatiotemporal evolution of large-scale modulations at the onset of instability is ruled by the well-known Ginzburg-Landau equation, independently of the details of the dynamics. Hence, we demonstrate the validity of such equation in the description of the behavior of a wide class of systems. We introduce a mathematical framework that is also able to retrieve the analytical expressions of the coefficients appearing in the Ginzburg-Landau equation as functions of the model parameters. Such framework can include higher order nonlocal interactions and has much larger applicability than the model considered here, possibly including pattern formation in models with very different physical features.
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Affiliation(s)
- Stefano Garlaschi
- Dipartimento di Fisica e Astronomia "Galileo Galilei", Università degli Studi di Padova, via Marzolo 8, 35131 Padova, Italy
| | - Deepak Gupta
- Dipartimento di Fisica e Astronomia "Galileo Galilei", Università degli Studi di Padova, via Marzolo 8, 35131 Padova, Italy
| | - Amos Maritan
- Dipartimento di Fisica e Astronomia "Galileo Galilei", Università degli Studi di Padova, via Marzolo 8, 35131 Padova, Italy
| | - Sandro Azaele
- Dipartimento di Fisica e Astronomia "Galileo Galilei", Università degli Studi di Padova, via Marzolo 8, 35131 Padova, Italy
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