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Ourabah K. Reaction rates in quasiequilibrium states. Phys Rev E 2025; 111:034115. [PMID: 40247529 DOI: 10.1103/physreve.111.034115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2024] [Accepted: 02/25/2025] [Indexed: 04/19/2025]
Abstract
Non-Maxwellian distributions are commonly observed across a wide range of systems and scales. While direct observations provide the strongest evidence for these distributions, they also manifest indirectly through their influence on processes and quantities that strongly depend on the energy distribution, such as reaction rates. In this paper, we investigate reaction rates in the general context of quasiequilibrium systems, which exhibit only local equilibrium. The hierarchical structure of these systems allows their statistical properties to be represented as a superposition of statistics, i.e., superstatistics. Focusing on the three universality classes of superstatistics-χ^{2}, inverse-χ^{2}, and log-normal-we examine how these nonequilibrium distributions influence reaction rates. We analyze, both analytically and numerically, reaction rates for processes involving tunneling phenomena, such as fusion, and identify conditions under which quasiequilibrium distributions outperform Maxwellian distributions in enhancing fusion reactivities. To provide a more detailed quantitative analysis, we further employ semiempirical cross sections to evaluate the effect of these nonequilibrium distributions on ionization and recombination rates in a plasma.
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Affiliation(s)
- Kamel Ourabah
- USTHB, Theoretical Physics Laboratory, Faculty of Physics, University of Bab-Ezzouar, Boite Postale 32, El Alia, Algiers 16111, Algeria
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2
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Costa MO, Silva R, de Lima MMF, Anselmo DHAL. Superstatistics Applied to Cucurbitaceae DNA Sequences. ENTROPY (BASEL, SWITZERLAND) 2024; 26:819. [PMID: 39451896 PMCID: PMC11507824 DOI: 10.3390/e26100819] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 09/17/2024] [Accepted: 09/23/2024] [Indexed: 10/26/2024]
Abstract
The short and long statistical correlations are essential in the genomic sequence. Such correlations are long-range for introns, whereas, for exons, these are short. In this study, we employed superstatistics to investigate correlations and fluctuations in the distribution of nucleotide sequence lengths of the Cucurbitaceae family. We established a time series for exon sizes to probe these correlations and fluctuations. We used data from the National Center for Biotechnology Information (NCBI) gene database to extract the temporal evolution of exon sizes, measured in terms of the number of base pairs (bp). To assess the model's viability, we utilized a timescale extraction method to determine the statistical properties of our time series, including the local distribution and fluctuations, which provide the exon size distributions based on the q-Gamma and inverse q-Gamma distributions. From the Bayesian statistics standpoint, both distributions are excellent for capturing the correlations and fluctuations from the data.
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Affiliation(s)
- M. O. Costa
- Departamento de Física, Universidade Federal do Rio Grande do Norte, Natal 59072-970, Brazil; (M.O.C.); (R.S.); (D.H.A.L.A.)
| | - R. Silva
- Departamento de Física, Universidade Federal do Rio Grande do Norte, Natal 59072-970, Brazil; (M.O.C.); (R.S.); (D.H.A.L.A.)
- Departamento de Física, Universidade do Estado do Rio Grande do Norte, Mossoró 59610-210, Brazil
| | - M. M. F. de Lima
- Departamento de Ciências Vegetais, Universidade Federal Rural do Semi-Árido, Mossoró 59625-900, Brazil
| | - D. H. A. L. Anselmo
- Departamento de Física, Universidade Federal do Rio Grande do Norte, Natal 59072-970, Brazil; (M.O.C.); (R.S.); (D.H.A.L.A.)
- Departamento de Física, Universidade do Estado do Rio Grande do Norte, Mossoró 59610-210, Brazil
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He H, Boehringer T, Schäfer B, Heppell K, Beck C. Analyzing spatio-temporal dynamics of dissolved oxygen for the River Thames using superstatistical methods and machine learning. Sci Rep 2024; 14:21288. [PMID: 39266599 PMCID: PMC11393100 DOI: 10.1038/s41598-024-72084-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2024] [Accepted: 09/03/2024] [Indexed: 09/14/2024] Open
Abstract
By employing superstatistical methods and machine learning, we analyze time series data of water quality indicators for the River Thames (UK). The indicators analyzed include dissolved oxygen, temperature, electrical conductivity, pH, ammonium, turbidity, and rainfall, with a specific focus on the dynamics of dissolved oxygen. After detrending, the probability density functions of dissolved oxygen fluctuations exhibit heavy tails that are effectively modeled using q-Gaussian distributions. Our findings indicate that the multiplicative Empirical Mode Decomposition method stands out as the most effective detrending technique, yielding the highest log-likelihood in nearly all fittings. We also observe that the optimally fitted width parameter of the q-Gaussian shows a negative correlation with the distance to the sea, highlighting the influence of geographical factors on water quality dynamics. In the context of same-time prediction of dissolved oxygen, regression analysis incorporating various water quality indicators and temporal features identify the Light Gradient Boosting Machine as the best model. SHapley Additive exPlanations reveal that temperature, pH, and time of year play crucial roles in the predictions. Furthermore, we use the Transformer, a state-of-the-art machine learning model, to forecast dissolved oxygen concentrations. For long-term forecasting, the Informer model consistently delivers superior performance, achieving the lowest Mean Absolute Error (0.15) and Symmetric Mean Absolute Percentage Error (21.96%) with the 192 historical time steps that we used. This performance is attributed to the Informer's ProbSparse self-attention mechanism, which allows it to capture long-range dependencies in time-series data more effectively than other machine learning models. It effectively recognizes the half-life cycle of dissolved oxygen, with particular attention to critical periods such as morning to early afternoon, late evening to early morning, and key intervals between the 16th and 26th quarter-hours of the previous half-day. Our findings provide valuable insights for policymakers involved in ecological health assessments, aiding in accurate predictions of river water quality and the maintenance of healthy aquatic ecosystems.
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Affiliation(s)
- Hankun He
- Centre for Complex Systems, Queen Mary University of London, London, UK.
| | | | - Benjamin Schäfer
- Institute for Automation and Applied Informatics, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Kate Heppell
- Chilterns National Landscape, High Wycombe, UK
- School of Geography, Queen Mary University of London, London, UK
| | - Christian Beck
- Centre for Complex Systems, Queen Mary University of London, London, UK
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Ourabah K. Superstatistics from a dynamical perspective: Entropy and relaxation. Phys Rev E 2024; 109:014127. [PMID: 38366540 DOI: 10.1103/physreve.109.014127] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2023] [Accepted: 01/02/2024] [Indexed: 02/18/2024]
Abstract
Distributions that deviate from equilibrium predictions are commonly observed across a broad spectrum of systems, ranging from laboratory experiments to astronomical phenomena. These distributions are generally regarded as a manifestation of a quasiequilibrium state and can very often be represented as a superposition of statistics, i.e., superstatistics. The underlying idea in this methodology is that the nonequilibrium system consists of a collection of smaller subsystems that remain infinitely close to equilibrium. This procedure has been effectively implemented in a kinetic setting, but thus far, only in the collisionless regime, limiting its scope of application. In this paper, we address the effect of collisions on the relaxation process and time evolution of superstatistical systems. After confronting the superstatistical distributions with experimental and simulation data, relevant to our analysis, we first study the effect of superstatistics on entropy. We explicitly show that, in the absence of long-range interactions, the extensivity of entropy is preserved, albeit influenced by the specific class of temperature fluctuations. Then, we examine how collisions drive the system towards a global equilibrium state, characterized by a maximum entropy, by employing the relaxation time approximation. This allows us to define a dynamical version of superstatistics, characterized by a singular time-varying parameter q(t), which undergoes a continuous evolution towards equilibrium. We show how this approach enables the determination of the evolution of the underlying temperature distribution under the influence of collisions, which act as stochastic forces, gradually narrowing the temperature distribution over time.
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Affiliation(s)
- Kamel Ourabah
- Theoretical Physics Laboratory, Faculty of Physics, University of Bab-Ezzouar, USTHB, Boite Postale 32, El Alia, Algiers 16111, Algeria
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Davis S, Avaria G, Bora B, Jain J, Moreno J, Pavez C, Soto L. Kappa distribution from particle correlations in nonequilibrium, steady-state plasmas. Phys Rev E 2023; 108:065207. [PMID: 38243483 DOI: 10.1103/physreve.108.065207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2023] [Accepted: 11/12/2023] [Indexed: 01/21/2024]
Abstract
Kappa-distributed velocities in plasmas are common in a wide variety of settings, from low-density to high-density plasmas. To date, they have been found mainly in space plasmas, but are recently being considered also in the modeling of laboratory plasmas. Despite being routinely employed, the origin of the kappa distribution remains, to this day, unclear. For instance, deviations from the Maxwell-Boltzmann distribution are sometimes regarded as a signature of the nonadditivity of the thermodynamic entropy, although there are alternative frameworks such as superstatistics where such an assumption is not needed. In this work we recover the kappa distribution for particle velocities from the formalism of nonequilibrium steady-states, assuming only a single requirement on the dependence between the kinetic energy of a test particle and that of its immediate environment. Our results go beyond the standard derivation based on superstatistics, as we do not require any assumption about the existence of temperature or its statistical distribution, instead obtaining them from the requirement on kinetic energies. All of this suggests that this family of distributions may be more common than usually assumed, widening its domain of application in particular to the description of plasmas from fusion experiments. Furthermore, we show that a description of kappa-distributed plasma is simpler in terms of features of the superstatistical inverse temperature distribution rather than the traditional parameters κ and the thermal velocity v_{th}.
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Affiliation(s)
- Sergio Davis
- Research Center in the intersection of Plasma Physics, Matter and Complexity (P2mc), Comisión Chilena de Energía Nuclear, Casilla 188-D, Santiago, Chile
- Departamento de Física, Facultad de Ciencias Exactas, Universidad Andres Bello, Sazié 2212, piso 7, 8370136, Santiago, Chile
| | - Gonzalo Avaria
- Departamento de Física, Universidad Técnica Federico Santa María, Av. Vicuña Mackenna 3939, 8940000, Santiago, Chile
| | - Biswajit Bora
- Research Center in the intersection of Plasma Physics, Matter and Complexity (P2mc), Comisión Chilena de Energía Nuclear, Casilla 188-D, Santiago, Chile
- Departamento de Física, Facultad de Ciencias Exactas, Universidad Andres Bello, Sazié 2212, piso 7, 8370136, Santiago, Chile
| | - Jalaj Jain
- Research Center in the intersection of Plasma Physics, Matter and Complexity (P2mc), Comisión Chilena de Energía Nuclear, Casilla 188-D, Santiago, Chile
| | - José Moreno
- Research Center in the intersection of Plasma Physics, Matter and Complexity (P2mc), Comisión Chilena de Energía Nuclear, Casilla 188-D, Santiago, Chile
- Departamento de Física, Facultad de Ciencias Exactas, Universidad Andres Bello, Sazié 2212, piso 7, 8370136, Santiago, Chile
| | - Cristian Pavez
- Research Center in the intersection of Plasma Physics, Matter and Complexity (P2mc), Comisión Chilena de Energía Nuclear, Casilla 188-D, Santiago, Chile
- Departamento de Física, Facultad de Ciencias Exactas, Universidad Andres Bello, Sazié 2212, piso 7, 8370136, Santiago, Chile
| | - Leopoldo Soto
- Research Center in the intersection of Plasma Physics, Matter and Complexity (P2mc), Comisión Chilena de Energía Nuclear, Casilla 188-D, Santiago, Chile
- Departamento de Física, Facultad de Ciencias Exactas, Universidad Andres Bello, Sazié 2212, piso 7, 8370136, Santiago, Chile
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Tamburrini A, Davis S, Moya PS. Evaluating the Adiabatic Invariants in Magnetized Plasmas Using a Classical Ehrenfest Theorem. ENTROPY (BASEL, SWITZERLAND) 2023; 25:1559. [PMID: 37998251 PMCID: PMC10670122 DOI: 10.3390/e25111559] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 11/10/2023] [Accepted: 11/14/2023] [Indexed: 11/25/2023]
Abstract
In this article, we address the reliance on probability density functions to obtain macroscopic properties in systems with multiple degrees of freedom as plasmas, and the limitations of expensive techniques for solving Equations such as Vlasov's. We introduce the Ehrenfest procedure as an alternative tool that promises to address these challenges more efficiently. Based on the conjugate variable theorem and the well-known fluctuation-dissipation theorem, this procedure offers a less expensive way of deriving time evolution Equations for macroscopic properties in systems far from equilibrium. We investigate the application of the Ehrenfest procedure for the study of adiabatic invariants in magnetized plasmas. We consider charged particles trapped in a dipole magnetic field and apply the procedure to the study of adiabatic invariants in magnetized plasmas and derive Equations for the magnetic moment, longitudinal invariant, and magnetic flux. We validate our theoretical predictions using a test particle simulation, showing good agreement between theory and numerical results for these observables. Although we observed small differences due to time scales and simulation limitations, our research supports the utility of the Ehrenfest procedure for understanding and modeling the behavior of particles in magnetized plasmas. We conclude that this procedure provides a powerful tool for the study of dynamical systems and statistical mechanics out of equilibrium, and opens perspectives for applications in other systems with probabilistic continuity.
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Affiliation(s)
- Abiam Tamburrini
- Departamento de Física, Facultad de Ciencias, Universidad de Chile, Santiago 8370459, Chile
| | - Sergio Davis
- Research Center in the Intersection of Plasma Physics, Matter and Complexity (P2mc), Comisión Chilena de Energía Nuclear, Casilla 188-D, Santiago 8320000, Chile;
- Departamento de Física, Facultad de Ciencias Exactas, Universidad Andres Bello, Santiago 8370136, Chile
| | - Pablo S. Moya
- Departamento de Física, Facultad de Ciencias, Universidad de Chile, Santiago 8370459, Chile
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Sánchez E, Atenas B. Application of Cairns-Tsallis distribution to the dipole-type Hamiltonian mean-field model. Phys Rev E 2023; 108:044123. [PMID: 37978622 DOI: 10.1103/physreve.108.044123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Accepted: 09/26/2023] [Indexed: 11/19/2023]
Abstract
We found that the rare distribution of velocities in quasisteady states of the dipole-type Hamiltonian mean-field model can be explained by the Cairns-Tsallis distribution, which has been used to describe nonthermal electron populations of some plasmas. This distribution gives us two interesting parameters which allow an adequate interpretation of the output data obtained through molecular dynamics simulations, namely, the characteristic parameter q of the so-called nonextensive systems and the α parameter, which can be seen as an indicator of the number of particles with nonequilibrium behavior in the distribution. Our analysis shows that fit parameters obtained for the dipole-type Hamiltonian mean-field simulated system are ad hoc with some nonthermality and nonextensivity constraints found by different authors for plasma systems described through the Cairns-Tsallis distribution.
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Affiliation(s)
- Ewin Sánchez
- Instituto de Investigación Multidisciplinario en Ciencia y Tecnología, Universidad de La Serena, La Serena 170000, Chile and Departamento de Física, Universidad de La Serena, Avenida Juan Cisternas 1200, La Serena 170000, Chile
| | - Boris Atenas
- Departamento de Física, Facultad de Ciencias, Universidad de Tarapacá, Casilla 7-D, Arica, Chile
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Costa MO, Silva R, Anselmo DHAL. Superstatistical and DNA sequence coding of the human genome. Phys Rev E 2022; 106:064407. [PMID: 36671113 DOI: 10.1103/physreve.106.064407] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Accepted: 11/16/2022] [Indexed: 12/14/2022]
Abstract
In this work, by considering superstatistics we investigate the short-range correlations (SRCs) and the fluctuations in the distribution of lengths of strings of nucleotides. To this end, a stochastic model provides the distributions of the size of the exons based on the q-Gamma and inverse q-Gamma distributions. Specifically, we define a time series for exon sizes to investigate the SRC and the fluctuations through the superstatistics distributions. To test the model's viability, we use the Project Ensembl database of genes to extract the time evolution of exon sizes, calculated in terms of the number of base pairs (bp) in these biological databases. Our findings show that, depending on the chromosome, both distributions are suitable for describing the length distribution of human DNA for lengths greater than 10 bp. In addition, we used Bayesian statistics to perform a selection model approach, which revealed weak evidence for the inverse q-Gamma distribution for a considerable number of chromosomes.
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Affiliation(s)
- M O Costa
- Departamento de Física, Universidade Federal do Rio Grande do Norte, Natal - RN, 59072-970, Brasil
| | - R Silva
- Departamento de Física, Universidade Federal do Rio Grande do Norte, Natal - RN, 59072-970, Brasil and Programa de Pós-Graduação em Física, Universidade do Estado do Rio Grande do Norte, Mossoró - Rio Grande do Norte, 59610-210, Brasil
| | - D H A L Anselmo
- Departamento de Física, Universidade Federal do Rio Grande do Norte, Natal - RN, 59072-970, Brasil and Programa de Pós-Graduação em Física, Universidade do Estado do Rio Grande do Norte, Mossoró - Rio Grande do Norte, 59610-210, Brasil
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9
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Ourabah K. Generalized statistical mechanics of stellar systems. Phys Rev E 2022; 105:064108. [PMID: 35854568 DOI: 10.1103/physreve.105.064108] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Accepted: 05/19/2022] [Indexed: 11/07/2022]
Abstract
The observed distributions of stellar parameters, in particular, rotational and radial velocities, often depart from the Maxwellian (Gaussian) distribution. In the absence of a consistent statistical framework, these distributions are, in general, accounted for phenomenologically by employing power-law distributions, such as Tsallis or Kaniadakis distributions. Here we argue that the observed distributions correspond to locally Gaussian distributions, whose characteristic width is regarded as a statistical variable, in accordance with common knowledge that this parameter is mass dependent. The distributions arising within this picture correspond to superstatistics-a formalism emerging naturally in the context of self-gravitating media. We discuss in detail the distributions arising within this formalism and confront them with observational data of open clusters. We compute their moments and show that the Chandrasekhar-Münch relation remains invariant in this scenario. We also address the effect of these distributions on the thermalization of a massive body, e.g., a supermassive black hole, immersed in a stellar gas. We further discuss how the superstatistical picture clarifies certain ambiguities while offering a whole family of distributions (of which asymptotic power laws represent a special case), opening possibilities for fitting observational data.
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Affiliation(s)
- Kamel Ourabah
- Theoretical Physics Laboratory, Faculty of Physics, University of Bab-Ezzouar, USTHB, Boite Postale 32, El Alia, Algiers 16111, Algeria
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Schäfer B, Heppell CM, Rhys H, Beck C. Fluctuations of water quality time series in rivers follow superstatistics. iScience 2021; 24:102881. [PMID: 34401665 PMCID: PMC8348929 DOI: 10.1016/j.isci.2021.102881] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Revised: 06/02/2021] [Accepted: 07/14/2021] [Indexed: 10/26/2022] Open
Abstract
Superstatistics is a general method from nonequilibrium statistical physics which has been applied to a variety of complex systems, ranging from hydrodynamic turbulence to traffic delays and air pollution dynamics. Here, we investigate water quality time series (such as dissolved oxygen concentrations and electrical conductivity) as measured in rivers and provide evidence that they exhibit superstatistical behavior. Our main example is time series as recorded in the River Chess in South East England. Specifically, we use seasonal detrending and empirical mode decomposition to separate trends from fluctuations for the measured data. With either detrending method, we observe heavy-tailed fluctuation distributions, which are well described by log-normal superstatistics for dissolved oxygen. Contrarily, we find a double peaked non-standard superstatistics for the electrical conductivity data, which we model using two combinedχ 2 -distributions.
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Affiliation(s)
- Benjamin Schäfer
- School of Mathematical Sciences, Queen Mary University of London, London E1 4NS, UK
- Faculty of Science and Technology, Norwegian University of Life Sciences, 1432 Ås, Norway
| | - Catherine M. Heppell
- School of Geography, Queen Mary University of London, Mile End Road, London E1 4NS, UK
| | - Hefin Rhys
- Flow Cytometry Science Technology Platform, The Francis Crick Institute, London, UK
| | - Christian Beck
- School of Mathematical Sciences, Queen Mary University of London, London E1 4NS, UK
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