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Nicholas TC, Stones AE, Patel A, Michel FM, Reeder RJ, Aarts DGAL, Deringer VL, Goodwin AL. Geometrically frustrated interactions drive structural complexity in amorphous calcium carbonate. Nat Chem 2024; 16:36-41. [PMID: 37749235 PMCID: PMC10774122 DOI: 10.1038/s41557-023-01339-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Accepted: 08/24/2023] [Indexed: 09/27/2023]
Abstract
Amorphous calcium carbonate is an important precursor for biomineralization in marine organisms. Key outstanding problems include understanding the structure of amorphous calcium carbonate and rationalizing its metastability as an amorphous phase. Here we report high-quality atomistic models of amorphous calcium carbonate generated using state-of-the-art interatomic potentials to help guide fits to X-ray total scattering data. Exploiting a recently developed inversion approach, we extract from these models the effective Ca⋯Ca interaction potential governing the structure. This potential contains minima at two competing distances, corresponding to the two different ways that carbonate ions bridge Ca2+-ion pairs. We reveal an unexpected mapping to the Lennard-Jones-Gauss model normally studied in the context of computational soft matter. The empirical model parameters for amorphous calcium carbonate take values known to promote structural complexity. We thus show that both the complex structure and its resilience to crystallization are actually encoded in the geometrically frustrated effective interactions between Ca2+ ions.
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Affiliation(s)
- Thomas C Nicholas
- Inorganic Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, UK
| | - Adam Edward Stones
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, UK
| | - Adam Patel
- Inorganic Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, UK
| | - F Marc Michel
- Department of Geosciences, Virginia Tech, Blacksburg, VA, USA
| | - Richard J Reeder
- Department of Geosciences, Stony Brook University, Stony Brook, NY, USA
| | - Dirk G A L Aarts
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, UK
| | - Volker L Deringer
- Inorganic Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, UK.
| | - Andrew L Goodwin
- Inorganic Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, UK.
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2
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Maher CE, Jiao Y, Torquato S. Hyperuniformity of maximally random jammed packings of hyperspheres across spatial dimensions. Phys Rev E 2023; 108:064602. [PMID: 38243527 DOI: 10.1103/physreve.108.064602] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2023] [Accepted: 11/16/2023] [Indexed: 01/21/2024]
Abstract
The maximally random jammed (MRJ) state is the most random (i.e., disordered) configuration of strictly jammed (mechanically rigid) nonoverlapping objects. MRJ packings are hyperuniform, meaning their long-wavelength density fluctuations are anomalously suppressed compared to typical disordered systems, i.e., their structure factors S(k) tend to zero as the wave number |k| tends to zero. Here we show that generating high-quality strictly jammed states for Euclidean space dimensions d=3,4, and 5 is of paramount importance in ensuring hyperuniformity and extracting precise values of the hyperuniformity exponent α>0 for MRJ states, defined by the power-law behavior of S(k)∼|k|^{α} in the limit |k|→0. Moreover, we show that for fixed d it is more difficult to ensure jamming as the particle number N increases, which results in packings that are nonhyperuniform. Free-volume theory arguments suggest that the ideal MRJ state does not contain rattlers, which act as defects in numerically generated packings. As d increases, we find that the fraction of rattlers decreases substantially. Our analysis of the largest truly jammed packings suggests that the ideal MRJ packings for all dimensions d≥3 are hyperuniform with α=d-2, implying the packings become more hyperuniform as d increases. The differences in α between MRJ packings and the recently proposed Manna-class random close packed (RCP) states, which were reported to have α=0.25 in d=3 and be nonhyperuniform (α=0) for d=4 and d=5, demonstrate the vivid distinctions between the large-scale structure of RCP and MRJ states in these dimensions. Our paper clarifies the importance of the link between true jamming and hyperuniformity and motivates the development of an algorithm to produce rattler-free three-dimensional MRJ packings.
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Affiliation(s)
| | - Yang Jiao
- Materials Science and Engineering, Arizona State University, Tempe, Arizona 85287, USA
- Department of Physics, Arizona State University, Tempe, Arizona 85287, USA
| | - Salvatore Torquato
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, USA
- Department of Physics, Princeton University, Princeton, New Jersey 08544, USA
- Princeton Materials Institute, Princeton University, Princeton, New Jersey 08544, USA
- Program in Applied and Computational Mathematics, Princeton University, Princeton, New Jersey 08544, USA
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González HI, Cinacchi G. Dense Disordered Jammed Packings of Hard Spherocylinders with a Low Aspect Ratio: A Characterization of Their Structure. J Phys Chem B 2023; 127:6814-6824. [PMID: 37478840 PMCID: PMC10405222 DOI: 10.1021/acs.jpcb.3c03195] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Revised: 06/27/2023] [Indexed: 07/23/2023]
Abstract
This work numerically investigates dense disordered (maximally random) jammed packings of hard spherocylinders of cylinder length L and diameter D by focusing on L/D ∈ [0,2]. It is within this interval that one expects that the packing fraction of these dense disordered jammed packings ϕMRJ hsc attains a maximum. This work confirms the form of the graph ϕMRJ hsc versus L/D: here, comparably to certain previous investigations, it is found that the maximal ϕMRJ hsc = 0.721 ± 0.001 occurs at L/D = 0.45 ± 0.05. Furthermore, this work meticulously characterizes the structure of these dense disordered jammed packings via the special pair-correlation function of the interparticle distance scaled by the contact distance and the ensuing analysis of the statistics of the hard spherocylinders in contact: here, distinctly from all previous investigations, it is found that the dense disordered jammed packings of hard spherocylinders with 0.45 ≲ L/D ≤ 2 are isostatic.
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Affiliation(s)
- Hugo Imaz González
- Departamento
de Física Teórica de la Materia Condensada, Universidad Autónoma de Madrid, Ciudad Universitaria
de Cantoblanco, E-28049 Madrid, España
| | - Giorgio Cinacchi
- Departamento
de Física Teórica de la Materia Condensada, Universidad Autónoma de Madrid, Ciudad Universitaria
de Cantoblanco, E-28049 Madrid, España
- Instituto
de Física de la Materia Condensada (IFIMAC), Universidad Autónoma de Madrid, Ciudad Universitaria de Cantoblanco, E-28049 Madrid, España
- Instituto
de Ciencias de Materiales “Nicolás Cabrera”, Universidad Autónoma de Madrid, Ciudad Universitaria
de Cantoblanco, E-28049 Madrid, España
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Marienhagen P, Wagner J. Equation of state of hard lenses: A combined virial series and simulation approach. Phys Rev E 2022; 106:014101. [PMID: 35974553 DOI: 10.1103/physreve.106.014101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Accepted: 05/23/2022] [Indexed: 06/15/2023]
Abstract
We provide highly accurate equation-of-state data for the isotropic phase of hard lenses obtained by means of cluster Monte Carlo simulations. This data is analyzed using a virial approach considering coefficients up to the order eight and Carnahan-Starling type closure relations for the virial series. The comparison with previously investigated systems consisting of hard, oblate ellipsoids of revolution allows insights into the detailed influence of the particle geometry. We propose a generalized Carnahan-Starling approach as a heuristic equation of state for the isotropic phase of hard lenses that in first approximation shows the same dependence on the excess part of the excluded volume as identified for oblate, hard lenses of revolution.
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Affiliation(s)
| | - Joachim Wagner
- Institut für Chemie, Universität Rostock, 18051 Rostock, Germany
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Marienhagen P, Hellmann R, Wagner J. Calculation of third to eighth virial coefficients of hard lenses and hard, oblate ellipsoids of revolution employing an efficient algorithm. Phys Rev E 2021; 104:015308. [PMID: 34412361 DOI: 10.1103/physreve.104.015308] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Accepted: 06/25/2021] [Indexed: 11/07/2022]
Abstract
We provide third to eighth virial coefficients of oblate, hard ellipsoids of revolution and hard lenses in dependence on their aspect ratio ν. Employing an algorithm optimized for hard anisotropic shapes, highly accurate data are accessible with comparatively small numerical effort. For both geometries, reduced virial coefficients B[over ̃]_{i}(ν)=B_{i}(ν)/B_{2}^{i-1}(ν) are in first approximation proportional to the inverse excess contribution α^{-1} of their excluded volume. The latter quantity is directly accessible from second virial coefficients and analytically known for convex bodies.
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Affiliation(s)
- Philipp Marienhagen
- Institut für Chemie, Universität Rostock, Albert-Einstein-Straße 3a, 18059 Rostock, Germany
| | - Robert Hellmann
- Institut für Thermodynamik, Helmut-Schmidt-Universität/Universität der Bundeswehr Hamburg, 22043 Hamburg, Germany
| | - Joachim Wagner
- Institut für Chemie, Universität Rostock, Albert-Einstein-Straße 3a, 18059 Rostock, Germany
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Maher CE, Stillinger FH, Torquato S. Kinetic Frustration Effects on Dense Two-Dimensional Packings of Convex Particles and Their Structural Characteristics. J Phys Chem B 2021; 125:2450-2464. [PMID: 33650864 DOI: 10.1021/acs.jpcb.1c00497] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The study of hard-particle packings is of fundamental importance in physics, chemistry, cell biology, and discrete geometry. Much of the previous work on hard-particle packings concerns their densest possible arrangements. By contrast, we examine kinetic effects inevitably present in both numerical and experimental packing protocols. Specifically, we determine how changing the compression/shear rate of a two-dimensional packing of noncircular particles causes it to deviate from its densest possible configuration, which is always periodic. The adaptive shrinking cell (ASC) optimization scheme maximizes the packing fraction of a hard-particle packing by first applying random translations and rotations to the particles and then isotropically compressing and shearing the simulation box repeatedly until a possibly jammed state is reached. We use a stochastic implementation of the ASC optimization scheme to mimic different effective time scales by varying the number of particle moves between compressions/shears. We generate dense, effectively jammed, monodisperse, two-dimensional packings of obtuse scalene triangle, rhombus, curved triangle, lens, and "ice cream cone" (a semicircle grafted onto an isosceles triangle) shaped particles, with a wide range of packing fractions and degrees of order. To quantify these kinetic effects, we introduce the kinetic frustration index K, which measures the deviation of a packing from its maximum possible packing fraction. To investigate how kinetics affect short- and long-range ordering in these packings, we compute their spectral densities χ̃V(k) and characterize their contact networks. We find that kinetic effects are most significant when the particles have greater asphericity, less curvature, and less rotational symmetry. This work may be relevant to the design of laboratory packing protocols.
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Affiliation(s)
- Charles Emmett Maher
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Frank H Stillinger
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Salvatore Torquato
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States.,Department of Physics, Princeton University, Princeton, New Jersey 08544, United States.,Princeton Institute for the Science and Technology of Materials, Princeton University, Princeton, New Jersey 08544, United States.,Program in Applied and Computational Mathematics, Princeton University, Princeton, New Jersey 08544, United States
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Piasecki R, Olchawa W, Frączek D, Bartecka A. A Two-Stage Reconstruction of Microstructures with Arbitrarily Shaped Inclusions. MATERIALS (BASEL, SWITZERLAND) 2020; 13:E2748. [PMID: 32560404 PMCID: PMC7345931 DOI: 10.3390/ma13122748] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Revised: 05/29/2020] [Accepted: 06/13/2020] [Indexed: 01/29/2023]
Abstract
The main goal of our research is to develop an effective method with a wide range of applications for the statistical reconstruction of heterogeneous microstructures with compact inclusions of any shape, such as highly irregular grains. The devised approach uses multi-scale extended entropic descriptors (ED) that quantify the degree of spatial non-uniformity of configurations of finite-sized objects. This technique is an innovative development of previously elaborated entropy methods for statistical reconstruction. Here, we discuss the two-dimensional case, but this method can be generalized into three dimensions. At the first stage, the developed procedure creates a set of black synthetic clusters that serve as surrogate inclusions. The clusters have the same individual areas and interfaces as their target counterparts, but random shapes. Then, from a given number of easy-to-generate synthetic cluster configurations, we choose the one with the lowest value of the cost function defined by us using extended ED. At the second stage, we make a significant change in the standard technique of simulated annealing (SA). Instead of swapping pixels of different phases, we randomly move each of the selected synthetic clusters. To demonstrate the accuracy of the method, we reconstruct and analyze two-phase microstructures with irregular inclusions of silica in rubber matrix as well as stones in cement paste. The results show that the two-stage reconstruction (TSR) method provides convincing realizations for these complex microstructures. The advantages of TSR include the ease of obtaining synthetic microstructures, very low computational costs, and satisfactory mapping in the statistical context of inclusion shapes. Finally, its simplicity should greatly facilitate independent applications.
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Affiliation(s)
- Ryszard Piasecki
- Institute of Physics, University of Opole, Oleska 48, 45-052 Opole, Poland; (W.O.); (A.B.)
| | - Wiesław Olchawa
- Institute of Physics, University of Opole, Oleska 48, 45-052 Opole, Poland; (W.O.); (A.B.)
| | - Daniel Frączek
- Department of Materials Physics, Opole University of Technology, Katowicka 48, 45-061 Opole, Poland;
| | - Agnieszka Bartecka
- Institute of Physics, University of Opole, Oleska 48, 45-052 Opole, Poland; (W.O.); (A.B.)
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