Free-energy transduction within autonomous systems

Unlocking the potential of information flow: Maximizing free-energy transduction in a model of an autonomous rotary molecular motor

Molecular motors fulfill critical functions within all living beings. Understanding their underlying working principles is therefore of great interest. Here we develop a simple model inspired by the two-component biomolecular motor F_{o}-F_{1} ATP synthase. We analyze its energetics and characterize information flows between the machine's components. At maximum output power we find that information transduction plays a minor role for free-energy transduction. However, when the two components are coupled to different environments (e.g., when in contact with heat baths at different temperatures), we show that information flow becomes a resource worth exploiting to maximize free-energy transduction. Our findings suggest that real-world powerful and efficient information engines could be found in machines whose components are subjected to fluctuations of different strength, since in this situation the benefit gained from using information for work extraction can outweigh the costs of information generation.

Inferring Subsystem Efficiencies in Bipartite Molecular Machines

Molecular machines composed of coupled subsystems transduce free energy between different external reservoirs, in the process internally transducing energy and information. While subsystem efficiencies of these molecular machines have been measured in isolation, less is known about how they behave in their natural setting when coupled together and acting in concert. Here, we derive upper and lower bounds on the subsystem efficiencies of a bipartite molecular machine. We demonstrate their utility by estimating the efficiencies of the F_{o} and F_{1} subunits of ATP synthase and that of kinesin pulling a diffusive cargo.

Optimal finite-time Brownian Carnot engine

Recent advances in experimental control of colloidal systems have spurred a revolution in the production of mesoscale thermodynamic devices. Functional "textbook" engines, such as the Stirling and Carnot cycles, have been produced in colloidal systems where they operate far from equilibrium. Simultaneously, significant theoretical advances have been made in the design and analysis of such devices. Here, we use methods from thermodynamic geometry to characterize the optimal finite-time nonequilibrium cyclic operation of the parametric harmonic oscillator in contact with a time-varying heat bath with particular focus on the Brownian Carnot cycle. We derive the optimally parametrized Carnot cycle, along with two other new cycles and compare their dissipated energy, efficiency, and steady-state power production against each other and a previously tested experimental protocol for the Carnot cycle. We demonstrate a 20% improvement in dissipated energy over previous experimentally tested protocols and a ∼50% improvement under other conditions for one of our engines, whereas our final engine is more efficient and powerful than the others we considered. Our results provide the means for experimentally realizing optimal mesoscale heat engines.

Internal energy and information flows mediate input and output power in bipartite molecular machines

Microscopic biological systems operate far from equilibrium, are subject to strong fluctuations, and are composed of many coupled components with interactions varying in nature and strength. Researchers are actively investigating the general design principles governing how biomolecular machines achieve effective free-energy transduction in light of these challenges. We use a model of two strongly coupled stochastic rotary motors to explore the effect of coupling strength between components of a molecular machine. We observe prominent thermodynamic characteristics at intermediate coupling strength, near that which maximizes output power: a maximum in power and information transduced from the upstream to the downstream system, and equal subsystem entropy production rates. These observations are unified through a bound on the machine's input and output power, which accounts for both the energy and information transduced between subsystems.