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Forrester M, Petros S, Cattell O, Lai YM, O'Dea RD, Sotiropoulos S, Coombes S. Whole brain functional connectivity: Insights from next generation neural mass modelling incorporating electrical synapses. PLoS Comput Biol 2024; 20:e1012647. [PMID: 39637233 DOI: 10.1371/journal.pcbi.1012647] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2024] [Revised: 12/17/2024] [Accepted: 11/18/2024] [Indexed: 12/07/2024] Open
Abstract
The ready availability of brain connectome data has both inspired and facilitated the modelling of whole brain activity using networks of phenomenological neural mass models that can incorporate both interaction strength and tract length between brain regions. Recently, a new class of neural mass model has been developed from an exact mean field reduction of a network of spiking cortical cell models with a biophysically realistic model of the chemical synapse. Moreover, this new population dynamics model can naturally incorporate electrical synapses. Here we demonstrate the ability of this new modelling framework, when combined with data from the Human Connectome Project, to generate patterns of functional connectivity (FC) of the type observed in both magnetoencephalography and functional magnetic resonance neuroimaging. Some limited explanatory power is obtained via an eigenmode description of frequency-specific FC patterns, obtained via a linear stability analysis of the network steady state in the neigbourhood of a Hopf bifurcation. However, direct numerical simulations show that empirical data is more faithfully recapitulated in the nonlinear regime, and exposes a key role of gap junction coupling strength in generating empirically-observed neural activity, and associated FC patterns and their evolution. Thereby, we emphasise the importance of maintaining known links with biological reality when developing multi-scale models of brain dynamics. As a tool for the study of dynamic whole brain models of the type presented here we further provide a suite of C++ codes for the efficient, and user friendly, simulation of neural mass networks with multiple delayed interactions.
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Affiliation(s)
- Michael Forrester
- Centre for Mathematical Medicine and Biology, School of Mathematical Sciences, University of Nottingham, Nottingham, United Kingdom
| | - Sammy Petros
- Centre for Mathematical Medicine and Biology, School of Mathematical Sciences, University of Nottingham, Nottingham, United Kingdom
| | - Oliver Cattell
- Centre for Mathematical Medicine and Biology, School of Mathematical Sciences, University of Nottingham, Nottingham, United Kingdom
| | - Yi Ming Lai
- Faculty of Medicine & Health Sciences, University of Nottingham, Nottingham, United Kingdom
| | - Reuben D O'Dea
- Centre for Mathematical Medicine and Biology, School of Mathematical Sciences, University of Nottingham, Nottingham, United Kingdom
| | - Stamatios Sotiropoulos
- Faculty of Medicine & Health Sciences, University of Nottingham, Nottingham, United Kingdom
| | - Stephen Coombes
- Centre for Mathematical Medicine and Biology, School of Mathematical Sciences, University of Nottingham, Nottingham, United Kingdom
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Zheng Z, Xu C, Fan J, Liu M, Chen X. Order parameter dynamics in complex systems: From models to data. CHAOS (WOODBURY, N.Y.) 2024; 34:022101. [PMID: 38341762 DOI: 10.1063/5.0180340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 12/14/2023] [Indexed: 02/13/2024]
Abstract
Collective ordering behaviors are typical macroscopic manifestations embedded in complex systems and can be ubiquitously observed across various physical backgrounds. Elements in complex systems may self-organize via mutual or external couplings to achieve diverse spatiotemporal coordinations. The order parameter, as a powerful quantity in describing the transition to collective states, may emerge spontaneously from large numbers of degrees of freedom through competitions. In this minireview, we extensively discussed the collective dynamics of complex systems from the viewpoint of order-parameter dynamics. A synergetic theory is adopted as the foundation of order-parameter dynamics, and it focuses on the self-organization and collective behaviors of complex systems. At the onset of macroscopic transitions, slow modes are distinguished from fast modes and act as order parameters, whose evolution can be established in terms of the slaving principle. We explore order-parameter dynamics in both model-based and data-based scenarios. For situations where microscopic dynamics modeling is available, as prototype examples, synchronization of coupled phase oscillators, chimera states, and neuron network dynamics are analytically studied, and the order-parameter dynamics is constructed in terms of reduction procedures such as the Ott-Antonsen ansatz, the Lorentz ansatz, and so on. For complicated systems highly challenging to be well modeled, we proposed the eigen-microstate approach (EMP) to reconstruct the macroscopic order-parameter dynamics, where the spatiotemporal evolution brought by big data can be well decomposed into eigenmodes, and the macroscopic collective behavior can be traced by Bose-Einstein condensation-like transitions and the emergence of dominant eigenmodes. The EMP is successfully applied to some typical examples, such as phase transitions in the Ising model, climate dynamics in earth systems, fluctuation patterns in stock markets, and collective motion in living systems.
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Affiliation(s)
- Zhigang Zheng
- Institute of Systems Science, Huaqiao University, Xiamen 361021, China and College of Information Science and Engineering, Huaqiao University, Xiamen 361021, China
| | - Can Xu
- Institute of Systems Science, Huaqiao University, Xiamen 361021, China and College of Information Science and Engineering, Huaqiao University, Xiamen 361021, China
| | - Jingfang Fan
- School of Systems Science, Beijing Normal University, Beijing 100875, China and Institute of Nonequilibrium Systems, Beijing Normal University, Beijing 100875, China
| | - Maoxin Liu
- School of Systems Science, Beijing Normal University, Beijing 100875, China and Institute of Nonequilibrium Systems, Beijing Normal University, Beijing 100875, China
| | - Xiaosong Chen
- School of Systems Science, Beijing Normal University, Beijing 100875, China and Institute of Nonequilibrium Systems, Beijing Normal University, Beijing 100875, China
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Pyragas V, Pyragas K. Mean-field equations for neural populations with q-Gaussian heterogeneities. Phys Rev E 2022; 105:044402. [PMID: 35590671 DOI: 10.1103/physreve.105.044402] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2022] [Accepted: 03/29/2022] [Indexed: 06/15/2023]
Abstract
Describing the collective dynamics of large neural populations using low-dimensional models for averaged variables has long been an attractive task in theoretical neuroscience. Recently developed reduction methods make it possible to derive such models directly from the microscopic dynamics of individual neurons. To simplify the reduction, the Cauchy distribution is usually assumed for heterogeneous network parameters. Here we extend the reduction method for a wider class of heterogeneities defined by the q-Gaussian distribution. The shape of this distribution depends on the Tsallis index q and gradually changes from the Cauchy distribution to the normal Gaussian distribution as this index changes. We derive the mean-field equations for an inhibitory network of quadratic integrate-and-fire neurons with a q-Gaussian-distributed excitability parameter. It is shown that the dynamic modes of the network significantly depend on the form of the distribution determined by the Tsallis index. The results obtained from the mean-field equations are confirmed by numerical simulation of the microscopic model.
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Affiliation(s)
- Viktoras Pyragas
- Center for Physical Sciences and Technology, 10257 Vilnius, Lithuania
| | - Kestutis Pyragas
- Center for Physical Sciences and Technology, 10257 Vilnius, Lithuania
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