Protein dynamics implications of the low- and high-temperature denaturation of myoglobin

Construction of a myoglobin scaffold-based biocatalyst for the biodegradation of sulfadiazine and sulfathiazole

Sulfonamide antibiotics, a family of broad-spectrum antibiotic drugs, are increasingly used in aquaculture and are frequently detected in aquatic environments. This poses a potential threat to organisms and may cause the evolution of antimicrobial resistance. Therefore, it is important to develop an environmentally friendly and efficient biocatalyst to degrade sulfonamides (SAs) such as sulfadiazine (SD) and sulfathiazole (ST). Here, we realized the direct and efficient degradation of SD and ST using a hydrogen peroxide-dependent artificial catalytic system based on myoglobin (Mb). The arrangements of amino acids at positions 29, 43, 64, and 68 were found to influence catalytic activity. An L29H/H64D/V68I myoglobin mutant showed the best catalytic efficiency (i.e., kcat/Km = 720.42 M-1 s-1) against SD. Next, mutant H64D/V68I showed the best degradation rate against SD (i.e., 91.45 ± 0.16%). Moreover, L29H/H64D/V68I Mb was found to efficiently catalyze ST oxidation (kcat/Km = 670.08 M-1 s-1), while H64D/V68I had the best degradation rate against ST (i.e., 99.45 ± 0.23%). Our results demonstrate that SAs can be efficiently degraded by artificial peroxygenases constructed using a myoglobin scaffold. This therefore provides a simple and economical method for the biodegradation of SD and ST.

Conformational Fluctuations and Induced Orientation of a Protein, Its Solvation Shell, and Bulk Water in Weak Non-Unfolding External Electric Fields

Extreme external electric fields have been reported to disrupt the tertiary structure of stably folded proteins; however, the effects of weaker electric fields on many biomolecules, especially net-uncharged proteins, and on the surrounding aqueous environment have been rarely discussed. To explore these effects at the atomic level, here, we have used molecular dynamics simulations to estimate rotational motion and induced structural fluctuations in the model protein ubiquitin and its hydration layer due to applied non-unfolding electrostatic fields. When exposed to weak electric fields of up to 0.2 V nm-1, ubiquitin displayed competition between internal structure-maintaining molecular interactions and the external orienting force, which disrupted the local structure in certain regions of the protein. Moreover, relative to hydration water, bulk water showed a greater tendency to align with the electric field, indicating that the presence of protein caused hydration water to acquire rotational mobility different from that in a pure-water system. The differential influence of the applied electric field on the hydration and bulk water surrounding ubiquitin will be common to almost all (nonmembrane) biomacromolecules. Our findings highlight the importance of local dipoles and their electric polarizability even in net-uncharged biomolecules.

Single-Step Fabrication of a Dual-Sensitive Chitosan Hydrogel by C-Mannich Reaction: Synthesis, Physicochemical Properties, and Screening of its Cu2+ Uptake

Uncovering the value of waste materials is one of the keys to sustainability. In this current work, valorization of chitosan was pursued to fabricate a novel modified chitosan functional hydrogel using a process-efficient protocol. The fabrication proceeds by a one-pot and single-step C-Mannich condensation of chitosan (3% w/v), glutaraldehyde (20 eq.), and 4-hydroxycoumarin (40 eq.) at 22 °C in 3% v/v acetic acid. The Mannich base modified chitosan hydrogel (CS-MB) exhibits a dual-responsive swelling behavior in response to pH and temperature that has not been observed in any other hydrogel systems. Combining the pre-defined optimal swelling pH (pH = 4) and temperature (T = 22 °C), the CS-MB was screened for its Cu2+ adsorption capacity at this condition. The CS-MB achieved an optimal adsorption capacity of 12.0 mg/g with 1.2 g/L adsorbent dosage after 36 h with agitation. The adsorption of Cu2+ on the surface of CS-MB was verified by EDS, and an overview of the adsorption sites was exhibited by FT-IR. The simply fabricated novel CS-MB hydrogel under investigation presents a unique response to external stimuli that exhibits a promise in heavy metal removal from aqueous media.