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Lepri S, Politi P, Pikovsky A. Lattice models of random advection and diffusion and their statistics. Phys Rev E 2023; 108:044150. [PMID: 37978607 DOI: 10.1103/physreve.108.044150] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Accepted: 10/09/2023] [Indexed: 11/19/2023]
Abstract
We study in detail a one-dimensional lattice model of a continuum, conserved field (mass) that is transferred deterministically between neighboring random sites. The model belongs to a wider class of lattice models capturing the joint effect of random advection and diffusion and encompassing as specific cases some models studied in the literature, such as those of Kang-Redner, Kipnis-Marchioro-Presutti, Takayasu-Taguchi, etc. The motivation for our setup comes from a straightforward interpretation of the advection of particles in one-dimensional turbulence, but it is also related to a problem of synchronization of dynamical systems driven by common noise. For finite lattices, we study both the coalescence of an initially spread field (interpreted as roughening), and the statistical steady-state properties. We distinguish two main size-dependent regimes, depending on the strength of the diffusion term and on the lattice size. Using numerical simulations and a mean-field approach, we study the statistics of the field. For weak diffusion, we unveil a characteristic hierarchical structure of the field. We also connect the model and the iterated function systems concept.
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Affiliation(s)
- Stefano Lepri
- Consiglio Nazionale delle Ricerche, Istituto dei Sistemi Complessi, Via Madonna del Piano 10, I-50019 Sesto Fiorentino, Italy
- Istituto Nazionale di Fisica Nucleare, Sezione di Firenze, via G. Sansone 1, I-50019 Sesto Fiorentino, Italy
| | - Paolo Politi
- Consiglio Nazionale delle Ricerche, Istituto dei Sistemi Complessi, Via Madonna del Piano 10, I-50019 Sesto Fiorentino, Italy
- Istituto Nazionale di Fisica Nucleare, Sezione di Firenze, via G. Sansone 1, I-50019 Sesto Fiorentino, Italy
| | - Arkady Pikovsky
- Department of Physics and Astronomy, University of Potsdam Karl-Liebknecht-Strasse 24/25, Bldg 28 D-14476, Potsdam, Germany
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De S, Mitra D, Pandit R. Dynamic multiscaling in stochastically forced Burgers turbulence. Sci Rep 2023; 13:7151. [PMID: 37130867 PMCID: PMC10154400 DOI: 10.1038/s41598-023-29056-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Accepted: 01/30/2023] [Indexed: 05/04/2023] Open
Abstract
We carry out a detailed study of dynamic multiscaling in the turbulent nonequilibrium, but statistically steady, state of the stochastically forced one-dimensional Burgers equation. We introduce the concept of interval collapse time, which we define as the time taken for a spatial interval, demarcated by a pair of Lagrangian tracers, to collapse at a shock. By calculating the dynamic scaling exponents of the moments of various orders of these interval collapse times, we show that (a) there is not one but an infinity of characteristic time scales and (b) the probability distribution function of the interval collapse times is non-Gaussian and has a power-law tail. Our study is based on (a) a theoretical framework that allows us to obtain dynamic-multiscaling exponents analytically, (b) extensive direct numerical simulations, and (c) a careful comparison of the results of (a) and (b). We discuss possible generalizations of our work to higher dimensions, for the stochastically forced Burgers equation, and to other compressible flows that exhibit turbulence with shocks.
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Affiliation(s)
- Sadhitro De
- Centre for Condensed Matter Theory, Department of Physics, Indian Institute of Science, Bangalore, 560012, India
| | - Dhrubaditya Mitra
- NORDITA, KTH Royal Institute of Technology and Stockholm University, Roslagstullsbacken 23, 10691, Stockholm, Sweden.
| | - Rahul Pandit
- Centre for Condensed Matter Theory, Department of Physics, Indian Institute of Science, Bangalore, 560012, India
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Golden A, Dukovski I, Segrè D, Korolev KS. Growth instabilities shape morphology and genetic diversity of microbial colonies. Phys Biol 2022; 19:10.1088/1478-3975/ac8514. [PMID: 35901792 PMCID: PMC11209841 DOI: 10.1088/1478-3975/ac8514] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 07/28/2022] [Indexed: 11/11/2022]
Abstract
Cellular populations assume an incredible variety of shapes ranging from circular molds to irregular tumors. While we understand many of the mechanisms responsible for these spatial patterns, little is known about how the shape of a population influences its ecology and evolution. Here, we investigate this relationship in the context of microbial colonies grown on hard agar plates. This a well-studied system that exhibits a transition from smooth circular disks to more irregular and rugged shapes as either the nutrient concentration or cellular motility is decreased. Starting from a mechanistic model of colony growth, we identify two dimensionless quantities that determine how morphology and genetic diversity of the population depend on the model parameters. Our simulations further reveal that population dynamics cannot be accurately described by the commonly-used surface growth models. Instead, one has to explicitly account for the emergent growth instabilities and demographic fluctuations. Overall, our work links together environmental conditions, colony morphology, and evolution. This link is essential for a rational design of concrete, biophysical perturbations to steer evolution in the desired direction.
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Affiliation(s)
- Alexander Golden
- Department of Physics, Graduate Program in Bioinformatics, and Biological Design Center, Boston University, Boston, MA 02215, United States of America
| | - Ilija Dukovski
- Graduate Program in Bioinformatics, and Biological Design Center, Boston University, Boston, MA 02215, United States of America
| | - Daniel Segrè
- Department of Physics, Department of Biology, Department of Biomedical Engineering, Graduate Program in Bioinformatics, and Biological Design Center, Boston University, Boston, MA 02215, United States of America
| | - Kirill S Korolev
- Department of Physics, Graduate Program in Bioinformatics, and Biological Design Center, Boston University, Boston, MA 02215, United States of America
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Bisht P, Barma M. Interface growth driven by a single active particle. Phys Rev E 2019; 100:052120. [PMID: 31869981 DOI: 10.1103/physreve.100.052120] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2019] [Indexed: 11/07/2022]
Abstract
We study pattern formation, fluctuations, and scaling induced by a growth-promoting active walker on an otherwise static interface. Active particles on an interface define a simple model for energy-consuming proteins embedded in the plasma membrane, responsible for membrane deformation and cell movement. In our model, the active particle overturns local valleys of the interface into hills, simulating growth, while itself sliding and seeking new valleys. In one dimension, this "overturn-slide-search" dynamics of the active particle causes it to move superdiffusively in the transverse direction while pulling the immobile interface upward. Using Monte Carlo simulations, we find an emerging tentlike mean profile developing with time, despite large fluctuations. The roughness of the interface follows scaling with the growth, dynamic, and roughness exponents, derived using simple arguments as β=2/3, z=3/2, and α=1/2, respectively, implying a breakdown of the usual scaling law β=α/z, due to very local growth of the interface. The transverse displacement of the puller on the interface scales as ∼t^{2/3} and the probability distribution of its displacement is bimodal, with an unusual linear cusp at the origin. Both the mean interface pattern and probability distribution display scaling. A puller on a static two-dimensional interface also displays aspects of scaling in the mean profile and probability distribution. We also show that a pusher on a fluctuating interface moves subdiffusively leading to a separation of timescale in pusher motion and interface response.
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Affiliation(s)
- Prachi Bisht
- TIFR Centre for Interdisciplinary Sciences, Tata Institute of Fundamental Research, Gopanpally, Hyderabad 500107, India.,Indian Institute of Space Science and Technology, Thiruvananthapuram, Kerala 695547, India
| | - Mustansir Barma
- TIFR Centre for Interdisciplinary Sciences, Tata Institute of Fundamental Research, Gopanpally, Hyderabad 500107, India
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Cagnetta F, Evans MR, Marenduzzo D. Statistical mechanics of a single active slider on a fluctuating interface. Phys Rev E 2019; 99:042124. [PMID: 31108715 DOI: 10.1103/physreve.99.042124] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2018] [Indexed: 01/01/2023]
Abstract
We study the statistical mechanics of a single active slider on a fluctuating interface, by means of numerical simulations and theoretical arguments. The slider, which moves by definition towards the interface minima, is active as it also stimulates growth of the interface. Even though such a particle has no counterpart in thermodynamic systems, active sliders may provide a simple model for ATP-dependent membrane proteins that activate cytoskeletal growth. We find a wide range of dynamical regimes according to the ratio between the timescales associated with the slider motion and the interface relaxation. If the interface dynamics is slow, the slider behaves like a random walker in a random environment, which, furthermore, is able to escape environmental troughs by making them grow. This results in different dynamic exponents to the interface and the particle: the former behaves as an Edward-Wilkinson surface with dynamic exponent 2, whereas the latter has dynamic exponent 3/2. When the interface is fast, we get sustained ballistic motion with the particle surfing a membrane wave created by itself. However, if the interface relaxes immediately (i.e., it is infinitely fast), particle motion becomes symmetric and goes back to diffusive. Due to such a rich phenomenology, we propose the active slider as a toy model of fundamental interest in the field of active membranes and, generally, whenever the system constituent can alter the environment by spending energy.
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Affiliation(s)
- F Cagnetta
- SUPA, School of Physics and Astronomy, University of Edinburgh, Peter Guthrie Tait Road, Edinburgh EH9 3FD, United Kingdom
| | - M R Evans
- SUPA, School of Physics and Astronomy, University of Edinburgh, Peter Guthrie Tait Road, Edinburgh EH9 3FD, United Kingdom
| | - D Marenduzzo
- SUPA, School of Physics and Astronomy, University of Edinburgh, Peter Guthrie Tait Road, Edinburgh EH9 3FD, United Kingdom
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Singha T, Barma M. Time evolution of intermittency in the passive slider problem. Phys Rev E 2018; 97:010105. [PMID: 29448379 DOI: 10.1103/physreve.97.010105] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2017] [Indexed: 11/07/2022]
Abstract
How does a steady state with strong intermittency develop in time from an initial state which is statistically random? For passive sliders driven by various fluctuating surfaces, we show that the approach involves an indefinitely growing length scale which governs scaling properties. A simple model of sticky sliders suggests scaling forms for the time-dependent flatness and hyperflatness, both measures of intermittency and these are confirmed numerically for passive sliders driven by a Kardar-Parisi-Zhang surface. Aging properties are studied via a two-time flatness. We predict and verify numerically that the time-dependent flatness is, remarkably, a nonmonotonic function of time with different scaling forms at short and long times. The scaling description remains valid when clustering is more diffuse as for passive sliders evolving through Edwards-Wilkinson driving or under antiadvection, although exponents and scaling functions differ substantially.
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Affiliation(s)
- Tapas Singha
- TIFR Centre for Interdisciplinary Sciences, Tata Institute of Fundamental Research, Gopanpally, Hyderabad-500107, India
| | - Mustansir Barma
- TIFR Centre for Interdisciplinary Sciences, Tata Institute of Fundamental Research, Gopanpally, Hyderabad-500107, India
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Ueda M, Sasa SI. Replica Symmetry Breaking in Trajectories of a Driven Brownian Particle. PHYSICAL REVIEW LETTERS 2015; 115:080605. [PMID: 26340175 DOI: 10.1103/physrevlett.115.080605] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2014] [Indexed: 06/05/2023]
Abstract
We study a Brownian particle passively driven by a field obeying the noisy Burgers' equation. We demonstrate that the system exhibits replica symmetry breaking in the path ensemble with the initial position of the particle being fixed. The key step of the proof is that the path ensemble with a modified boundary condition can be exactly mapped onto the canonical ensemble of directed polymers.
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Affiliation(s)
- Masahiko Ueda
- Department of Physics, Kyoto University, Kyoto 606-8502, Japan
| | - Shin-ichi Sasa
- Department of Physics, Kyoto University, Kyoto 606-8502, Japan
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Nagar A, Majumdar SN, Barma M. Strong clustering of noninteracting, sliding passive scalars driven by fluctuating surfaces. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2006; 74:021124. [PMID: 17025410 DOI: 10.1103/physreve.74.021124] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2005] [Revised: 04/20/2006] [Indexed: 05/12/2023]
Abstract
We study the clustering of passive, noninteracting particles moving under the influence of a fluctuating field and random noise, in one and two dimensions. The fluctuating field in our case is provided by surfaces governed by the Kardar-Parisi-Zhang (KPZ) and the Edwards-Wilkinson (EW) equations, and the sliding particles follow the local surface slope. As the KPZ equation can be mapped to the noisy Burgers equation, the problem translates to that of passive scalars in a Burgers fluid. Monte Carlo simulations on discrete lattice models reveal very strong clustering of the passive particles for all sorts of dynamics under consideration. The resulting strong clustering state is defined using the scaling properties of the two point density-density correlation function. Our simulations show that the state is robust against changing the ratio of update speeds of the surface and particles. We also solve the related equilibrium problem of a stationary surface and finite noise, well known as the Sinai model for random walkers on a random landscape. For this problem, we obtain analytic results which allow closed form expressions to be found for the quantities of interest. Surprisingly, these results for the equilibrium problem show good agreement with the nonequilibrium KPZ problem.
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Affiliation(s)
- Apoorva Nagar
- Department of Theoretical Physics, Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400 005, India
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Gopalakrishnan M. Dynamics of a passive sliding particle on a randomly fluctuating surface. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2004; 69:011105. [PMID: 14995602 DOI: 10.1103/physreve.69.011105] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2003] [Indexed: 05/24/2023]
Abstract
We study the motion of a particle sliding under the action of an external field on a stochastically fluctuating one-dimensional Edwards-Wilkinson surface. Numerical simulations using the single-step model shows that the mean-square displacement of the sliding particle shows distinct dynamic scaling behavior, depending on whether the surface fluctuates faster or slower than the motion of the particle. When the surface fluctuations occur on a time scale much smaller than the particle motion, we find that the characteristic length scale shows anomalous diffusion with xi(t) approximately t(2phi), where phi approximately 0.67 from numerical data. On the other hand, when the particle moves faster than the surface, its dynamics is controlled by the surface fluctuations and xi(t) approximately t(1/2). A self-consistent approximation predicts that the anomalous diffusion exponent is phi=2/3, in good agreement with simulation results. We also discuss the possibility of a slow crossover toward asymptotic diffusive behavior. The probability distribution of the displacement has a Gaussian form in both the cases.
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Affiliation(s)
- Manoj Gopalakrishnan
- Department of Physics and Center for Stochastic Processes in Science and Engineering, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061-0211, USA.
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