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Nicolle A, Deng S, Ihme M, Kuzhagaliyeva N, Ibrahim EA, Farooq A. Mixtures Recomposition by Neural Nets: A Multidisciplinary Overview. J Chem Inf Model 2024; 64:597-620. [PMID: 38284618 DOI: 10.1021/acs.jcim.3c01633] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2024]
Abstract
Artificial Neural Networks (ANNs) are transforming how we understand chemical mixtures, providing an expressive view of the chemical space and multiscale processes. Their hybridization with physical knowledge can bridge the gap between predictivity and understanding of the underlying processes. This overview explores recent progress in ANNs, particularly their potential in the 'recomposition' of chemical mixtures. Graph-based representations reveal patterns among mixture components, and deep learning models excel in capturing complexity and symmetries when compared to traditional Quantitative Structure-Property Relationship models. Key components, such as Hamiltonian networks and convolution operations, play a central role in representing multiscale mixtures. The integration of ANNs with Chemical Reaction Networks and Physics-Informed Neural Networks for inverse chemical kinetic problems is also examined. The combination of sensors with ANNs shows promise in optical and biomimetic applications. A common ground is identified in the context of statistical physics, where ANN-based methods iteratively adapt their models by blending their initial states with training data. The concept of mixture recomposition unveils a reciprocal inspiration between ANNs and reactive mixtures, highlighting learning behaviors influenced by the training environment.
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Affiliation(s)
- Andre Nicolle
- Aramco Fuel Research Center, Rueil-Malmaison 92852, France
| | - Sili Deng
- Massachusetts Institute of Technology, Cambridge 02139, Massachusetts, United States
| | - Matthias Ihme
- Stanford University, Stanford 94305, California, United States
| | | | - Emad Al Ibrahim
- King Abdullah University of Science and Technology, Thuwal 23955, Saudi Arabia
| | - Aamir Farooq
- King Abdullah University of Science and Technology, Thuwal 23955, Saudi Arabia
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Monfared S, Zhou T, Andrade JE, Ioannidou K, Radjaï F, Ulm FJ, Pellenq RJM. Effect of Confinement on Capillary Phase Transition in Granular Aggregates. PHYSICAL REVIEW LETTERS 2020; 125:255501. [PMID: 33416387 DOI: 10.1103/physrevlett.125.255501] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2020] [Accepted: 11/16/2020] [Indexed: 06/12/2023]
Abstract
Using a 3D mean-field lattice-gas model, we analyze the effect of confinement on the nature of capillary phase transition in granular aggregates with varying disorder and their inverse porous structures obtained by interchanging particles and pores. Surprisingly, the confinement effects are found to be much less pronounced in granular aggregates as opposed to porous structures. We show that this discrepancy can be understood in terms of the surface-surface correlation length with a connected path through the fluid domain, suggesting that this length captures the true degree of confinement. We also find that the liquid-gas phase transition in these porous materials is of second order nature near capillary critical temperature, which is shown to represent a true critical temperature, i.e., independent of the degree of disorder and the nature of the solid matrix, discrete or continuous. The critical exponents estimated here from finite-size scaling analysis suggest that this transition belongs to the 3D random field Ising model universality class as hypothesized by F. Brochard and P.G. de Gennes, with the underlying random fields induced by local disorder in fluid-solid interactions.
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Affiliation(s)
- Siavash Monfared
- Division of Engineering and Applied Science, California Institute of Technology, Pasadena, California 91125, USA
| | - Tingtao Zhou
- Division of Engineering and Applied Science, California Institute of Technology, Pasadena, California 91125, USA
| | - José E Andrade
- Division of Engineering and Applied Science, California Institute of Technology, Pasadena, California 91125, USA
| | - Katerina Ioannidou
- CNRS, University of Montpellier, LMGC, 163 rue Auguste Broussonnet F-34090 Montpellier, France
- MultiScale Material Science for Energy and Environment UMI 3466 CNRS-MIT-Aix-Marseille Université Joint Laboratory, Cambridge, Massachusetts 02139, USA
| | - Farhang Radjaï
- CNRS, University of Montpellier, LMGC, 163 rue Auguste Broussonnet F-34090 Montpellier, France
| | - Franz-Josef Ulm
- Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Roland J-M Pellenq
- MultiScale Material Science for Energy and Environment UMI 3466 CNRS-MIT-Aix-Marseille Université Joint Laboratory, Cambridge, Massachusetts 02139, USA
- Department of Physics, Georgetown University, Washington, D.C. 20057, USA
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Chen X, Feng W, Liu H, Hu Y. Lattice density functional theory for confined Ising fluids: comparison between different functional approximations in slit pore. Mol Phys 2016. [DOI: 10.1080/00268976.2016.1185549] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Xueqian Chen
- State Key Laboratory of Chemical and Engineering and Department of Physics, East China University of Science and Technology, Shanghai, China
| | - Wei Feng
- State Key Laboratory of Chemical and Engineering and Department of Chemistry, East China University of Science and Technology, Shanghai, China
| | - Honglai Liu
- State Key Laboratory of Chemical and Engineering and Department of Chemistry, East China University of Science and Technology, Shanghai, China
| | - Ying Hu
- State Key Laboratory of Chemical and Engineering and Department of Chemistry, East China University of Science and Technology, Shanghai, China
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Kikkinides ES, Monson PA. Dynamic density functional theory with hydrodynamic interactions: Theoretical development and application in the study of phase separation in gas-liquid systems. J Chem Phys 2015; 142:094706. [DOI: 10.1063/1.4913636] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- E. S. Kikkinides
- Department of Mechanical Engineering, University of Western Macedonia, 50100 Kozani, Greece and Chemical Process and Energy Resources Institute (CPERI), Centre for Research and Technology Hellas (CERTH), 57001 Thermi-Thessaloniki, Greece
| | - P. A. Monson
- Department of Chemical Engineering, University of Massachusetts, 159 Goessmann Laboratory, 686 North Pleasant Street, Amherst, Massachusetts 01003-9303, USA
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Casselman JA, Desouza A, Monson PA. Modelling the dynamics of condensation and evaporation of fluids in three-dimensional slit pores. Mol Phys 2015. [DOI: 10.1080/00268976.2015.1009954] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Pazzona FG, Demontis P, Suffritti GB. Thermodynamics of the one-dimensional parallel Kawasaki model: exact solution and mean-field approximations. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 90:022118. [PMID: 25215700 DOI: 10.1103/physreve.90.022118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2014] [Indexed: 06/03/2023]
Abstract
The adsorption isotherm for the recently proposed parallel Kawasaki (PK) lattice-gas model [Phys. Rev. E 88, 062144 (2013)] is calculated exactly in one dimension. To do so, a third-order difference equation for the grand-canonical partition function is derived and solved analytically. In the present version of the PK model, the attraction and repulsion effects between two neighboring particles and between a particle and a neighboring empty site are ruled, respectively, by the dimensionless parameters ϕ and θ. We discuss the inflections induced in the isotherms by situations of high repulsion, the role played by finite lattice sizes in the emergence of substeps, and the adequacy of the two most widely used mean-field approximations in lattice gases, namely, the Bragg-Williams and the Bethe-Peierls approximations.
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Affiliation(s)
- Federico G Pazzona
- Dipartimento di Chimica e Farmacia, Università degli Studi di Sassari, 07100 Sassari, Italy
| | - Pierfranco Demontis
- Dipartimento di Chimica e Farmacia, Università degli Studi di Sassari, 07100 Sassari, Italy
| | - Giuseppe B Suffritti
- Dipartimento di Chimica e Farmacia, Università degli Studi di Sassari, 07100 Sassari, Italy
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Edison JR, Monson PA. Dynamic mean field theory for lattice gas models of fluids confined in porous materials: Higher order theory based on the Bethe-Peierls and path probability method approximations. J Chem Phys 2014; 141:024706. [DOI: 10.1063/1.4884456] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- John R. Edison
- Department of Chemical Engineering, University of Massachusetts, Amherst, Massachusetts 01003-9303, USA
| | - Peter A. Monson
- Department of Chemical Engineering, University of Massachusetts, Amherst, Massachusetts 01003-9303, USA
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Edison JR, Monson PA. Dynamics of capillary condensation in lattice gas models of confined fluids: A comparison of dynamic mean field theory with dynamic Monte Carlo simulations. J Chem Phys 2013; 138:234709. [DOI: 10.1063/1.4811111] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Coasne B, Galarneau A, Pellenq RJM, Di Renzo F. Adsorption, intrusion and freezing in porous silica: the view from the nanoscale. Chem Soc Rev 2013; 42:4141-71. [PMID: 23348418 DOI: 10.1039/c2cs35384a] [Citation(s) in RCA: 124] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Benoit Coasne
- Institut Charles Gerhardt Montpellier, CNRS (UMR 5253), University Montpellier 2, ENSCM, 8 rue de l'Ecole Normale, 34296 Montpellier, France.
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Edison JR, Monson PA. Dynamic mean field theory of condensation and evaporation processes for fluids in porous materials: Application to partial drying and drying. Faraday Discuss 2010; 146:167-84; discussion 195-215, 395-403. [DOI: 10.1039/b925672e] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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11
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Mushrif SH, Rey AD. An integrated model for adsorption-induced strain in microporous solids. Chem Eng Sci 2009. [DOI: 10.1016/j.ces.2009.04.014] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Salazar R, Gelb LD. A computational study of the reconstruction of amorphous mesoporous materials from gas adsorption isotherms and structure factors via evolutionary optimization. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2007; 23:530-41. [PMID: 17209604 DOI: 10.1021/la0619123] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
A general method for the three-dimensional reconstruction of mesoporous materials by evolutionary optimization against target data is developed. The method is applied specifically in reconstruction of amorphous material models using gas adsorption data, structure factor data, or a combination of both. A recently introduced lattice-gas approach is used to model adsorption in these calculations, and a high-pass limited Fourier representation is used to facilitate evolution of large-scale structures during the optimization. Reconstructions are made of several material models which mimic real materials obtained either by phase separation and etching or by sol-gel processing. Analysis of the reconstructions provides considerable insight into the type and quantity of structural information probed by gas adsorption and small-angle scattering experiments. We find that reconstructions based only on structure factors tend to underestimate the mean pore size. We also find that in many cases excellent reconstructions can be obtained using only adsorption-branch data, and that in all cases reconstructions based jointly on both types of data are superior to those based only on one, suggesting that these measures contain "complementary" information. It is also found that in most cases the use of desorption data is not warranted, and that the use of adsorption data taken at many temperatures will not improve reconstructions. The reproducibility of the method is shown to be satisfactory. The method can be computationally expensive if gas adsorption data are used, but it is easily parallelized, and therefore results can still be obtained in reasonable time. Finally, the possible application of this approach to real systems, including templated porous materials, is discussed.
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Affiliation(s)
- Rafael Salazar
- Department of Chemistry and Center for Materials Innovation, Washington University in St. Louis, St. Louis, Missouri 63130, USA
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Pellenq RM, Coasne B, Denoyel R, Puibasset J. Effect of pore morphology and topology on capillary condensation in nanopores: a theoretical and molecular simulation study. ACTA ACUST UNITED AC 2007. [DOI: 10.1016/s0167-2991(07)80002-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/07/2023]
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14
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Puibasset J. Generalized isobaric–isothermal ensemble: application to capillary condensation and cavitation in heterogeneous nanopores. Mol Phys 2006. [DOI: 10.1080/00268970600938485] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Coasne B, Jain SK, Gubbins KE. Freezing of fluids confined in a disordered nanoporous structure. PHYSICAL REVIEW LETTERS 2006; 97:105702. [PMID: 17025829 DOI: 10.1103/physrevlett.97.105702] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2006] [Indexed: 05/12/2023]
Abstract
Freezing of a simple fluid in a disordered nanoporous carbon is studied using molecular simulations. Only partial crystallization occurs, and the confined phase is composed of crystalline and amorphous nanodomains. This freezing behavior departs strongly from that for nanopores of simple geometry. We present a method for analyzing the freezing in such disordered materials in terms of a transition in the average size and number of crystalline clusters. The results provide a basis for the interpretation of experiments on freezing in such materials, particularly 1H-NMR and scattering experiments.
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Affiliation(s)
- B Coasne
- Laboratoire de Physicochimie de la Matière Condensée, Université Montpellier 2 and CNRS (UMR 5617), Montpellier, France
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Muthukrishnan A, Sangaranarayanan MV. Differential capacitance of liquid/liquid interfaces--a lattice gas model approach. J Colloid Interface Sci 2006; 296:624-33. [PMID: 16288771 DOI: 10.1016/j.jcis.2005.09.025] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2005] [Revised: 08/25/2005] [Accepted: 09/10/2005] [Indexed: 11/19/2022]
Abstract
A lattice gas model formalism under mean field approximation is developed for the analysis of differential capacitance pertaining to liquid/liquid interfaces. The interfacial profiles for the two solvent mole fractions are chosen and ionic charge densities are estimated by minimizing the Helmholtz free energy. The dependence of the differential capacitance on various interaction energies, electrolyte concentrations and dielectric constants is indicated. The influence of the solvent density profile is analyzed and deviations from the predictions of Gouy-Chapman theory are pointed out.
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Affiliation(s)
- A Muthukrishnan
- Department of Chemistry, Indian Institute of Technology, Madras, Chennai 600036, India
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