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Escaff D. Self-organization of anti-aligning active particles: Waving pattern formation and chaos. Phys Rev E 2024; 110:024603. [PMID: 39294969 DOI: 10.1103/physreve.110.024603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Accepted: 07/25/2024] [Indexed: 09/21/2024]
Abstract
Recently, it has been shown that purely anti-aligning interaction between active particles may induce a finite wavelength instability. The formed patterns display intricate spatiotemporal dynamics, suggesting the presence of chaos. Here, we propose a quasi-one-dimensional simplification of the particle interaction model. This simplified model allows us to deduce amplitude equations that describe the collective motion of the active entities. We show that these equations exhibit chaotic orbits. Furthermore, via direct numerical simulations of the particle's system, we discuss the pertinence of these amplitude equations approach for describing the particle's self-coordinated motions.
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2
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Zhang Y, Shui L, Liu Y, Liu Z. Generation of buckling and wrinkling in elastic films: The effect of initial imperfection. Phys Rev E 2021; 104:055002. [PMID: 34942714 DOI: 10.1103/physreve.104.055002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2021] [Accepted: 10/21/2021] [Indexed: 11/07/2022]
Abstract
The symmetry breaking that is induced by initial imperfection (e.g., geometry or material inhomogeneity and out-of-plane disturbance) is a necessary condition for film buckling. However, the effect of initial imperfection on the buckling behavior is still not clear cut. Herein, given an elastic substrate-free circular film subjected to in-plane compressive stress and arbitrary initial imperfection, evolution of the deflection morphology is numerically studied and theoretically analyzed. Specifically, a two-dimensional spatial spectrum analysis is adopted to acquire the deflection morphology's dominant wavelength, which is combined with the maximum absolute deflection to characterize the deflection patterns. Before the so-called critical instability, the film under compression is found to go through a transition stage. Overall, the deflection increment in this stage is negligible except approaching the critical state. However, the dominant wavelength is found to be continuously growing (or decreasing) rather than suddenly appears upon reaching the so-called critical state, and, interestingly, such growth is found to be independent of the intensity and pattern of the initial imperfection if the same initial dominant wavelength is guaranteed. In the discussion, for both the transition and buckling stages, evolution laws of the deflection amplitude and wavelength are established analytically and found to agree well with the numerical results. This research clearly presents the actual evolution process of wrinkling morphology from linear in-plane deformation with small stable deflection to out-of-plane instability with large deflection, which deepens the cognition of instability behavior of films and provides a basis for related applications such as high-precision mechanical characterization.
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Affiliation(s)
- Yidu Zhang
- Department of Engineering Mechanics, School of Mechanics, Civil Engineering and Architecture, Northwestern Polytechnical University, Xi'an, Shaanxi 710129, China
| | - Langquan Shui
- Department of Engineering Mechanics, School of Civil Engineering, Wuhan University, Wuhan, Hubei 430072, China
| | - Yongshou Liu
- Department of Engineering Mechanics, School of Mechanics, Civil Engineering and Architecture, Northwestern Polytechnical University, Xi'an, Shaanxi 710129, China
| | - Ze Liu
- Department of Engineering Mechanics, School of Civil Engineering, Wuhan University, Wuhan, Hubei 430072, China
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3
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Morel MJ, Bortolozzo U, Clerc MG, Jullien A, Residori S. Colorimetry characterization of molecular reorientation transition in thin nematic cells. CHAOS (WOODBURY, N.Y.) 2020; 30:073102. [PMID: 32752653 DOI: 10.1063/1.5145075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2020] [Accepted: 06/09/2020] [Indexed: 06/11/2023]
Abstract
The characterization of equilibria and their transition is fundamental in dynamic systems. Experimentally, the characterization of transitions is complex due to time scales separation, the effect of thermal fluctuations, and inherent experimental imperfections. Liquid crystal devices are derived from the manipulation of the molecular reorientation and transition between them by employing external electrical and magnetic fields. Here, we investigate and determine the Fréedericksz transition using hue measurements of the transmitted light in thin nematic liquid crystal cells. Based on birefringent retardation experienced by transmitted light due to molecular reorientation, the color adjustment of the nematic liquid crystal cells under white light illumination is characterized. By monitoring the hue of the transmitted light, the bifurcation diagram is determined. As a function of the voltage frequency, the critical transition voltage is characterized. The critical voltage increases with the applied frequency.
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Affiliation(s)
- M J Morel
- Departamento de Física and Millennium Institute for Research in Optics, FCFM, Universidad de Chile, Casilla 487-3, Santiago, Chile
| | - U Bortolozzo
- Institut de Physique de Nice, UMR7010, Université de Nice-Sophia Antipolis, CNRS, 1361 route des Lucioles, 06560 Valbonne, France
| | - M G Clerc
- Departamento de Física and Millennium Institute for Research in Optics, FCFM, Universidad de Chile, Casilla 487-3, Santiago, Chile
| | - A Jullien
- Institut de Physique de Nice, UMR7010, Université de Nice-Sophia Antipolis, CNRS, 1361 route des Lucioles, 06560 Valbonne, France
| | - S Residori
- Institut de Physique de Nice, UMR7010, Université de Nice-Sophia Antipolis, CNRS, 1361 route des Lucioles, 06560 Valbonne, France
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4
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Dessup T, Coste C, Saint Jean M. Hysteretic and intermittent regimes in the subcritical bifurcation of a quasi-one-dimensional system of interacting particles. Phys Rev E 2016; 93:012105. [PMID: 26871022 DOI: 10.1103/physreve.93.012105] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2015] [Indexed: 11/07/2022]
Abstract
In this article, we study the effects of white Gaussian additive thermal noise on a subcritical pitchfork bifurcation. We consider a quasi-one-dimensional system of particles that are transversally confined, with short-range (non-Coulombic) interactions and periodic boundary conditions in the longitudinal direction. In such systems, there is a structural transition from a linear order to a staggered row, called the zigzag transition. There is a finite range of transverse confinement stiffnesses for which the stable configuration at zero temperature is a localized zigzag pattern surrounded by aligned particles, which evidences the subcriticality of the bifurcation. We show that these configurations remain stable for a wide temperature range. At zero temperature, the transition between a straight line and such localized zigzag patterns is hysteretic. We have studied the influence of thermal noise on the hysteresis loop. Its description is more difficult than at T=0 K since thermally activated jumps between the two configurations always occur and the system cannot stay forever in a unique metastable state. Two different regimes have to be considered according to the temperature value with respect to a critical temperature T_{c}(τ_{obs}) that depends on the observation time τ_{obs}. An hysteresis loop is still observed at low temperature, with a width that decreases as the temperature increases toward T_{c}(τ_{obs}). In contrast, for T>T_{c}(τ_{obs}) the memory of the initial condition is lost by stochastic jumps between the configurations. The study of the mean residence times in each configuration gives a unique opportunity to precisely determine the barrier height that separates the two configurations, without knowing the complete energy landscape of this many-body system. We also show how to reconstruct the hysteresis loop that would exist at T=0 K from high-temperature simulations.
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Affiliation(s)
- Tommy Dessup
- Laboratoire "Matière et Systèmes Complexes" (MSC), UMR 7057 CNRS, Université Paris 7 Diderot, 75205 Paris Cedex 13, France
| | - Christophe Coste
- Laboratoire "Matière et Systèmes Complexes" (MSC), UMR 7057 CNRS, Université Paris 7 Diderot, 75205 Paris Cedex 13, France
| | - Michel Saint Jean
- Laboratoire "Matière et Systèmes Complexes" (MSC), UMR 7057 CNRS, Université Paris 7 Diderot, 75205 Paris Cedex 13, France
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5
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Cáceres MO, Fuentes MA. First-passage times for pattern formation in nonlocal partial differential equations. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 92:042122. [PMID: 26565183 DOI: 10.1103/physreve.92.042122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2015] [Indexed: 06/05/2023]
Abstract
We describe the lifetimes associated with the stochastic evolution from an unstable uniform state to a patterned one when the time evolution of the field is controlled by a nonlocal Fisher equation. A small noise is added to the evolution equation to define the lifetimes and to calculate the mean first-passage time of the stochastic field through a given threshold value, before the patterned steady state is reached. In order to obtain analytical results we introduce a stochastic multiscale perturbation expansion. This multiscale expansion can also be used to tackle multiplicative stochastic partial differential equations. A critical slowing down is predicted for the marginal case when the Fourier phase of the unstable initial condition is null. We carry out Monte Carlo simulations to show the agreement with our theoretical predictions. Analytic results for the bifurcation point and asymptotic analysis of traveling wave-front solutions are included to get insight into the noise-induced transition phenomena mediated by invading fronts.
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Affiliation(s)
- Manuel O Cáceres
- Centro Atómico Bariloche, CNEA, Instituto Balseiro, Universidad Nacional de Cuyo, and CONICET, Avenida E. Bustillo 9500, CP 8400, Bariloche, Argentina
| | - Miguel A Fuentes
- Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, New Mexico 87501, USA
- Instituto de Investigaciones Filosóficas, Bulnes 642, Buenos Aires 1428, Argentina
- Universidad San Sebastián, Lota 2465, Santiago 7500000, Chile
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6
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Manikantan H, Saintillan D. Buckling transition of a semiflexible filament in extensional flow. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 92:041002. [PMID: 26565158 DOI: 10.1103/physreve.92.041002] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2015] [Indexed: 06/05/2023]
Abstract
An analytical expression for the fluctuation-rounded stretch-coil transition of semiflexible polymers in extensional flows is derived. The competition between elasticity and tension is known to cause a buckling instability in filaments placed near hyperbolic stagnation points and the effect of thermal fluctuations on this transition has yet to receive full quantitative treatment. Motivated by the findings of recent experiments as well as our simulations, we solve for the amplitude of the first buckled mode near the onset of the instability. This reveals a stochastic supercritical bifurcation, which is in excellent agreement with full numerical simulations.
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Affiliation(s)
- Harishankar Manikantan
- Department of Mechanical and Aerospace Engineering, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0411, USA
| | - David Saintillan
- Department of Mechanical and Aerospace Engineering, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093-0411, USA
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7
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Rivas N, Thornton AR, Luding S, van der Meer D. From the granular Leidenfrost state to buoyancy-driven convection. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 91:042202. [PMID: 25974479 DOI: 10.1103/physreve.91.042202] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2015] [Indexed: 06/04/2023]
Abstract
Grains inside a vertically vibrated box undergo a transition from a density-inverted and horizontally homogeneous state, referred to as the granular Leidenfrost state, to a buoyancy-driven convective state. We perform a simulational study of the precursors of such a transition and quantify their dynamics as the bed of grains is progressively fluidized. The transition is preceded by transient convective states, which increase their correlation time as the transition point is approached. Increasingly correlated convective flows lead to density fluctuations, as quantified by the structure factor, that also shows critical behavior near the transition point. The amplitude of the modulations in the vertical velocity field are seen to be best described by a quintic supercritical amplitude equation with an additive noise term. The validity of such an amplitude equation, and previously observed collective semiperiodic oscillations of the bed of grains, suggests a new interpretation of the transition analogous to a coupled chain of vertically vibrated damped oscillators. Increasing the size of the container shows metastability of convective states, as well as an overall invariant critical behavior close to the transition.
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Affiliation(s)
- Nicolas Rivas
- Multi-Scale Mechanics (MSM), MESA +, CTW, University of Twente, P.O. Box 217, 7500 AE Enschede, The Netherlands
| | - Anthony R Thornton
- Multi-Scale Mechanics (MSM), MESA +, CTW, University of Twente, P.O. Box 217, 7500 AE Enschede, The Netherlands
- Mathematics of Computational Science (MaCS), MESA +, CTW, University of Twente, P.O. Box 217, 7500 AE Enschede, The Netherlands
| | - Stefan Luding
- Multi-Scale Mechanics (MSM), MESA +, CTW, University of Twente, P.O. Box 217, 7500 AE Enschede, The Netherlands
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8
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Contreras DAC, Clerc MG. Internal noise and system size effects induce nondiffusive kink dynamics. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 91:032922. [PMID: 25871187 DOI: 10.1103/physreve.91.032922] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2015] [Indexed: 06/04/2023]
Abstract
We investigate the effects of inherent fluctuations and system size in the dynamics of domain between uniform symmetric states. In the case of monotonous kinks, this dynamics is characterized by exhibiting nonsymmetric random walks, being attracted to the system borders. For nonmonotonous interface, the dynamics is replaced by a hopping dynamic. Based on bistable universal models, we characterize the origin of these unexpected dynamics through use of the stochastic kinematic laws for the interface position and the survival probability. Numerical simulations show a quite good agreement with the theoretical predictions.
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Affiliation(s)
- Diego A C Contreras
- Departamento de Física, Facultad de Ciencias Físicas y Matemáticas, Universidad de Chile, Casilla 487-3, Santiago, Chile
| | - Marcel G Clerc
- Departamento de Física, Facultad de Ciencias Físicas y Matemáticas, Universidad de Chile, Casilla 487-3, Santiago, Chile
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9
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Andrade-Silva I, Clerc MG, Odent V. Zig-zag wall lattice in a nematic liquid crystal with an in-plane switching configuration. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 90:022504. [PMID: 25215746 DOI: 10.1103/physreve.90.022504] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2014] [Indexed: 06/03/2023]
Abstract
Liquid crystals displays with tailoring electrodes exhibit complex spatiotemporal dynamics when a large voltage is applied. We report experimental observations of the appearance of a programmable zig-zag lattice using an in-plane-switching cell filled with a nematic liquid crystal. Applying a small voltage to a wide range of frequencies, the system exhibits an Ising wall lattice. Increasing the voltage, this lattice presents a spatial instability generating an undulating wall lattice, and to higher voltages it becomes zig-zag type. Experimentally, we characterize the bifurcations and phase diagram of the wall lattice. Theoretically, we develop, from first principles, a descriptive model. This model has a good qualitative agreement with experimental observations.
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Affiliation(s)
- I Andrade-Silva
- Departamento de Física, Facultad de Ciencias Físicas y Matemáticas, Universidad de Chile, Casilla 487-3, Santiago, Chile
| | - M G Clerc
- Departamento de Física, Facultad de Ciencias Físicas y Matemáticas, Universidad de Chile, Casilla 487-3, Santiago, Chile
| | - V Odent
- Departamento de Física, Facultad de Ciencias Físicas y Matemáticas, Universidad de Chile, Casilla 487-3, Santiago, Chile
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10
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Macías JE, Clerc MG, Falcón C, García-Ñustes MA. Spatially modulated kinks in shallow granular layers. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 88:020201. [PMID: 24032762 DOI: 10.1103/physreve.88.020201] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2013] [Revised: 06/30/2013] [Indexed: 06/02/2023]
Abstract
We report on the experimental observation of spatially modulated kinks in a shallow one-dimensional fluidized granular layer subjected to a periodic air flow. We show the appearance of these solutions as the layer undergoes a parametric instability. Due to the inherent fluctuations of the granular layer, the kink profile exhibits an effective wavelength, a precursor, which modulates spatially the homogeneous states and drastically modifies the kink dynamics. We characterize the average and fluctuating properties of this solution. Finally, we show that the temporal evolution of these kinks is dominated by a hopping dynamics, related directly to the underlying spatial structure.
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Affiliation(s)
- J E Macías
- Departamento de Física, Facultad de Ciencias Físicas y Matemáticas, Universidad de Chile, Casilla 487-3, Santiago, Chile
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11
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Delfau JB, Coste C, Saint Jean M. Noisy zigzag transition, fluctuations, and thermal bifurcation threshold. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 87:062135. [PMID: 23848655 DOI: 10.1103/physreve.87.062135] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2013] [Indexed: 06/02/2023]
Abstract
We study the zigzag transition in a system of particles with screened electrostatic interaction, submitted to a thermal noise. At finite temperature, this configurational phase transition is an example of noisy supercritical pitchfork bifurcation. The measurements of transverse fluctuations allow a complete description of the bifurcation region, which takes place between the deterministic threshold and a thermal threshold beyond which thermal fluctuations do not allow the system to flip between the symmetric zigzag configurations. We show that a divergence of the saturation time for the transverse fluctuations allows a precise and unambiguous definition of this thermal threshold. Its evolution with the temperature is shown to be in good agreement with theoretical predictions from noisy bifurcation theory.
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Affiliation(s)
- Jean-Baptiste Delfau
- Laboratoire Matière et Systèmes Complexes (MSC), UMR 7057 CNRS, Université Paris 7 Diderot, 75205 Paris Cedex 13, France
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12
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Agez G, Clerc MG, Louvergneaux E, Rojas RG. Bifurcations of emerging patterns in the presence of additive noise. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 87:042919. [PMID: 23679501 DOI: 10.1103/physreve.87.042919] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2012] [Revised: 02/07/2013] [Indexed: 06/02/2023]
Abstract
A universal description of the effects of additive noise on super- and subcritical spatial bifurcations in one-dimensional systems is theoretically, numerically, and experimentally studied. The probability density of the critical spatial mode amplitude is derived. From this generalized Rayleigh distribution we predict the shape of noisy bifurcations by means of the most probable value of the critical mode amplitude. Comparisons with numerical simulations are in quite good agreement for cubic or quintic amplitude equations accounting for stochastic supercritical bifurcation and for cubic-quintic amplitude equation accounting for stochastic subcritical bifurcation. Experimental results obtained in a one-dimensional Kerr-like slice subjected to optical feedback confirm the analytical expression prediction for the supercritical bifurcation shape.
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Affiliation(s)
- Gonzague Agez
- Centre d'Elaboration de Matériaux et d'Etudes Structurales, Université Paul Sabatier, 29, rue Jeanne Marvig, BP 94347, 31055 Toulouse Cedex 4, France
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13
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Kantsler V, Goldstein RE. Fluctuations, dynamics, and the stretch-coil transition of single actin filaments in extensional flows. PHYSICAL REVIEW LETTERS 2012; 108:038103. [PMID: 22400789 DOI: 10.1103/physrevlett.108.038103] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2011] [Indexed: 05/31/2023]
Abstract
Semiflexible polymers subject to hydrodynamic forcing play an important role in cytoskeletal motions in the cell, particularly when filaments guide molecular motors whose motions create flows. Near hyperbolic stagnation points, filaments experience a competition between bending elasticity and tension and are predicted to display suppressed thermal fluctuations in the extensional regime and a buckling instability under compression. Using a microfluidic cross-flow geometry, we verify these predictions in detail, including a fluctuation-rounded stretch-coil transition of actin filaments.
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Affiliation(s)
- Vasily Kantsler
- Department of Applied Mathematics and Theoretical Physics, Centre for Mathematical Sciences, University of Cambridge, Wilberforce Road, Cambridge CB3 0WA, United Kingdom
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14
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Zezyulin DA, Konotop VV, Taki M. Modulational instability in a passive fiber cavity, revisited. OPTICS LETTERS 2011; 36:4623-4625. [PMID: 22139263 DOI: 10.1364/ol.36.004623] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Modulation instability in a passive fiber cavity is revisited. We address the problem in the statement with a continuous-time Ikeda map, rather than in the mean-field limit. It is found that plane wave solutions are unstable for both normal and anomalous dispersion regimes of an optical fiber. The origin of the instability in the continuous-time Ikeda map is in the mode mixing introduced by the beam splitter. The obtained conditions for the instability were compared with ones known for the discrete-time Ikeda map, showing appreciable difference, which, however reduces in the mean-field limit.
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Affiliation(s)
- D A Zezyulin
- Centro de Física Teórica e Computacional and Departamento de Física, Universidade de Lisboa, Avenida Professor Gama, Pinto 2, Lisboa 1649-003, Portugal.
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15
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Ortega I, Clerc MG, Falcón C, Mujica N. Subharmonic wave transition in a quasi-one-dimensional noisy fluidized shallow granular bed. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2010; 81:046208. [PMID: 20481808 DOI: 10.1103/physreve.81.046208] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2009] [Indexed: 05/29/2023]
Abstract
We present an experimental and theoretical study of the pattern formation process of standing subharmonic waves in a fluidized quasi-one-dimensional shallow granular bed. The fluidization process is driven by means of a time-periodic air flow, analogous to a tapping type of forcing. Measurements of the amplitude of the critical mode close to the transition are in quite good agreement with those inferred from a universal stochastic amplitude equation. This allows us to determine both the bifurcation point of the deterministic system and the corresponding noise intensity. We also show that the probability density distribution is well described by a generalized Rayleigh distribution, which is the stationary solution of the corresponding Fokker-Planck equation of the universal stochastic amplitude equation that describes our system.
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Affiliation(s)
- Ignacio Ortega
- Departamento de Física, Facultad de Ciencias Físicas y Matemáticas, Universidad de Chile, Casilla 487-3, Santiago, Chile
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