1
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Zheng C, Tang E. A topological mechanism for robust and efficient global oscillations in biological networks. Nat Commun 2024; 15:6453. [PMID: 39085205 PMCID: PMC11291491 DOI: 10.1038/s41467-024-50510-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Accepted: 07/11/2024] [Indexed: 08/02/2024] Open
Abstract
Long and stable timescales are often observed in complex biochemical networks, such as in emergent oscillations. How these robust dynamics persist remains unclear, given the many stochastic reactions and shorter time scales demonstrated by underlying components. We propose a topological model that produces long oscillations around the network boundary, reducing the system dynamics to a lower-dimensional current in a robust manner. Using this to model KaiC, which regulates the circadian rhythm in cyanobacteria, we compare the coherence of oscillations to that in other KaiC models. Our topological model localizes currents on the system edge, with an efficient regime of simultaneously increased precision and decreased cost. Further, we introduce a new predictor of coherence from the analysis of spectral gaps, and show that our model saturates a global thermodynamic bound. Our work presents a new mechanism and parsimonious description for robust emergent oscillations in complex biological networks.
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Affiliation(s)
- Chongbin Zheng
- Center for Theoretical Biological Physics, Rice University, Houston, TX, 77005, USA
- Department of Physics and Astronomy, Rice University, Houston, TX, 77005, USA
| | - Evelyn Tang
- Center for Theoretical Biological Physics, Rice University, Houston, TX, 77005, USA.
- Department of Physics and Astronomy, Rice University, Houston, TX, 77005, USA.
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2
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Bagchi D. Macroscopic charge segregation in driven polyelectrolyte solutions. SOFT MATTER 2022; 18:5676-5686. [PMID: 35861507 DOI: 10.1039/d2sm00448h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Understanding the behavior of charged complex fluids is crucial for a plethora of important industrial, technological, and medical applications. Here, using coarse-grained molecular dynamics simulations, we investigate the properties of a polyelectrolyte solution with explicit counterions and implicit solvent that is driven by a steady electric field. By properly tuning the interplay between interparticle electrostatics and the applied electric field, we uncover two non-equilibrium continuous phase transitions as a function of the driving field. The first transition occurs from a homogeneous mixed phase to a macroscopic charge-segregated phase in which the polyelectrolyte solution self-organizes to form two lanes of like-charges, parallel to the applied field. We show that the fundamental underlying factor responsible for the emergence of this charge segregation in the presence of an electric field is the excluded volume interactions of the drifting polyelectrolyte chains. As the driving field is increased further, a re-entrant transition is observed from a charge-segregated phase to a homogeneous phase. The re-entrance is signaled by a decrease in the mobility of the monomers and counterions as the electric field is increased. Furthermore, with multivalent counterions, a counterintuitive regime of negative differential mobility is observed in which the charges move progressively more slowly as the driving field is increased. We show that all these features can be consistently explained using an intuitive trapping mechanism that operates between the oppositely moving charges, and present numerical evidence to support our claims. Parameter dependencies and phase diagrams are studied to better understand charge segregation in such driven polyelectrolyte solutions.
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Affiliation(s)
- Debarshee Bagchi
- International Centre for Theoretical Sciences, Tata Institute of Fundamental Research, Bengaluru, India.
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3
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Yu H, Thijssen K, Jack RL. Perpendicular and parallel phase separation in two-species driven diffusive lattice gases. Phys Rev E 2022; 106:024129. [PMID: 36110007 DOI: 10.1103/physreve.106.024129] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Accepted: 08/01/2022] [Indexed: 06/15/2023]
Abstract
We study three different lattice models in which two species of diffusing particles are driven in opposite directions by an electric field. We focus on dynamical phase transitions that involve phase separation into domains that may be parallel or perpendicular to a driving field. In all cases, the perpendicular state appears for weak driving, consistent with previous work. For strong driving, we introduce two models that support the parallel state. In one model, this state occurs because of the inclusion of dynamical rules that enhance lateral diffusion during collisions; in the other, it is a result of a nearest-neighbor attractive or repulsive interaction between particles of the same or opposite species. We discuss the connections between these results and the behavior found in off-lattice systems, including laning and freezing by heating.
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Affiliation(s)
- Honghao Yu
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - Kristian Thijssen
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - Robert L Jack
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
- Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Wilberforce Road, Cambridge CB3 0WA, United Kingdom
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4
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Single molecule demonstration of Debye-Stokes-Einstein breakdown in polystyrene near the glass transition temperature. Nat Commun 2022; 13:3580. [PMID: 35739122 PMCID: PMC9226357 DOI: 10.1038/s41467-022-31318-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Accepted: 06/10/2022] [Indexed: 11/25/2022] Open
Abstract
Rotational-translational decoupling, in which translational motion is apparently enhanced over rotational motion in violation of Stokes-Einstein (SE) and Debye-Stokes-Einstein (DSE) predictions, has been observed in materials near their glass transition temperatures (Tg). This has been posited to result from ensemble averaging in the context of dynamic heterogeneity. In this work, ensemble and single molecule experiments are performed in parallel on a fluorescent probe in high molecular weight polystyrene near its Tg. Ensemble results show decoupling onset at approximately 1.15Tg, increasing to over three orders of magnitude at Tg. Single molecule measurements also show a high degree of decoupling, with typical molecules at Tg showing translational diffusion coefficients nearly 400 times higher than expected from SE/DSE predictions. At the single molecule level, higher degree of breakdown is associated with particularly mobile molecules and anisotropic trajectories, providing support for anomalous diffusion as a critical driver of rotational-translational decoupling and SE/DSE breakdown. Experiments with high-molecular-weight polystyrene provide insights into the mechanisms behind rotational-translational decoupling in glassy systems. Specifically, particularly mobile molecules exhibiting anisotropic trajectories are found to play a key role in Debye-Stokes-Einstein breakdown.
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5
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Gruber M, Puertas AM, Fuchs M. Critical force in active microrheology. Phys Rev E 2020; 101:012612. [PMID: 32069683 DOI: 10.1103/physreve.101.012612] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2019] [Indexed: 11/07/2022]
Abstract
Soft solids like colloidal glasses exhibit a yield stress, above which the system starts to flow. The microscopic analogon in microrheology is the untrapping or depinning of a tracer particle subject to an external force exceeding a threshold value in a glassy host. We characterize this delocalization transition based on a bifurcation analysis of the corresponding mode-coupling theory equations. A schematic model that allows analytical progress is presented first, and the full physical model is studied numerically next. This analysis yields a continuous dynamic transition with a critical power-law decay of the probe correlation functions with exponent -1/2. To compare with simulations with a limited duration, a finite-time analysis is performed, which yields reasonable results for not-too-small wave vectors. The theoretically predicted findings are verified by Langevin dynamics simulations. For small wave vectors we find anomalous behavior for the probe position correlation function, which can be traced back to a wave-vector divergence of the critical amplitude. In addition, we propose and test three methods to extract the critical force from experimental data, which provide the same value of the critical force when applied to the finite-time theory or simulations.
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Affiliation(s)
- M Gruber
- Fachbereich Physik, Universität Konstanz, 78457 Konstanz, Germany
| | - A M Puertas
- Departamento de Física Aplicada, Universidad de Almería, 04.120 Almería, Spain
| | - M Fuchs
- Fachbereich Physik, Universität Konstanz, 78457 Konstanz, Germany
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6
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Wu JC, An M, Ma WG. Spontaneous rectification and absolute negative mobility of inertial Brownian particles induced by Gaussian potentials in steady laminar flows. SOFT MATTER 2019; 15:7187-7194. [PMID: 31464332 DOI: 10.1039/c9sm00853e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
We study the transport of inertial Brownian particles in steady laminar flows in the presence of two-dimensional Gaussian potentials. Through extensive numerical simulations, it is found that the transport is sensitively dependent on the external constant force and the Gaussian potential. Within tailored parameter regimes, the system exhibits a rich variety of transport behaviors. There exists the phenomenon of spontaneous rectification (SR), where the directed transport of particles can occur in the absence of any external driving forces. It is found that SR of the particles can be manipulated by the spatial position of the Gaussian potential. Moreover, when the potential lies at the center of the cellular flow, the system exhibits absolute negative mobility (ANM), i.e., the particles can move in a direction opposite to the constant force. More importantly, the phenomenon of ANM induced by Gaussian potentials is robust in a wide range of system parameters and can be further strengthened with the optimized parameters, which may pave the way to the implementation of related experiments.
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Affiliation(s)
- Jian-Chun Wu
- School of Physics and Electronic Information, Shangrao Normal University, Shangrao 334001, China.
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7
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Wang H, Mohorič T, Zhang X, Dobnikar J, Horbach J. Active microrheology in two-dimensional magnetic networks. SOFT MATTER 2019; 15:4437-4444. [PMID: 31011733 DOI: 10.1039/c9sm00085b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
We study active microrheology in two-dimensional (2D) magnetic networks. To this end, we use Langevin dynamics computer simulations where single non-magnetic or magnetic tracer particles are pulled through the network structures via a constant force f. Structural changes in the network around the pulled tracer particle are characterized in terms of pair correlation functions. These functions indicate that the non-magnetic tracer particles tend to strongly affect the network structure leading to the formation of channels at sufficiently high forces, while the magnetic tracer particles modify the network structure only slightly. At zero pulling force, f = 0, both non-magnetic and magnetic tracer particles are localized, i.e. they do not show diffusive behavior in the long-time limit. Nevertheless, the friction coefficient, as obtained from the steady-state velocity of the tracer particles, seems to indicate a linear-response regime at small values of f. Beyond the latter linear response regime, the diffusion dynamics of the tracer particles are anisotropic with superdiffusive behavior in force direction. This transport anomaly is investigated via van Hove correlation functions and residence time distributions.
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Affiliation(s)
- Hanqing Wang
- State Key Laboratory of Organic-Inorganic Composites, Beijing University of Chemical Technology, Beijing 100029, P. R. China
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8
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Şenbil N, Gruber M, Zhang C, Fuchs M, Scheffold F. Observation of Strongly Heterogeneous Dynamics at the Depinning Transition in a Colloidal Glass. PHYSICAL REVIEW LETTERS 2019; 122:108002. [PMID: 30932679 DOI: 10.1103/physrevlett.122.108002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2018] [Revised: 12/06/2018] [Indexed: 06/09/2023]
Abstract
We study experimentally the origin of heterogeneous dynamics in strongly driven glass-forming systems. Thereto, we apply a well-defined force with a laser line trap on individual colloidal polystyrene probe particles seeded in an emulsion glass composed of droplets of the same size. Fluid and glass states can be probed. We monitor the trajectories of the probe and measure displacements and their distributions. Our experiments reveal intermittent dynamics around a depinning transition at a threshold force. For smaller forces, linear response connects mean displacement, and quiescent mean squared displacement. Mode coupling theory calculations rationalize the observations.
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Affiliation(s)
- Nesrin Şenbil
- Department of Physics, University of Fribourg, CH-1700 Fribourg, Switzerland
| | - Markus Gruber
- Fachbereich Physik, Universität Konstanz, 78457 Konstanz, Germany
| | - Chi Zhang
- Department of Physics, University of Fribourg, CH-1700 Fribourg, Switzerland
| | - Matthias Fuchs
- Fachbereich Physik, Universität Konstanz, 78457 Konstanz, Germany
| | - Frank Scheffold
- Department of Physics, University of Fribourg, CH-1700 Fribourg, Switzerland
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9
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Bénichou O, Illien P, Oshanin G, Sarracino A, Voituriez R. Tracer diffusion in crowded narrow channels. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2018; 30:443001. [PMID: 30211693 DOI: 10.1088/1361-648x/aae13a] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
We summarise different results on the diffusion of a tracer particle in lattice gases of hard-core particles with stochastic dynamics, which are confined to narrow channels-single-files, comb-like structures and quasi-one-dimensional channels with the width equal to several particle diameters. We show that in such geometries a surprisingly rich, sometimes even counter-intuitive, behaviour emerges, which is absent in unbounded systems. This is well-documented for the anomalous diffusion in single-files. Less known is the anomalous dynamics of a tracer particle in crowded branching single-files-comb-like structures, where several kinds of anomalous regimes take place. In narrow channels, which are broader than single-files, one encounters a wealth of anomalous behaviours in the case where the tracer particle is subject to a regular external bias: here, one observes an anomaly in the temporal evolution of the tracer particle velocity, super-diffusive at transient stages, and ultimately a giant diffusive broadening of fluctuations in the position of the tracer particle, as well as spectacular multi-tracer effects of self-clogging of narrow channels. Interactions between a biased tracer particle and a confined crowded environment also produce peculiar patterns in the out-of-equilibrium distribution of the environment particles, very different from the ones appearing in unbounded systems. For moderately dense systems, a surprising effect of a negative differential mobility takes place, such that the velocity of a biased tracer particle can be a non-monotonic function of the force. In some parameter ranges, both the velocity and the diffusion coefficient of a biased tracer particle can be non-monotonic functions of the density. We also survey different results obtained for a tracer particle diffusion in unbounded systems, which will permit a reader to have an exhaustively broad picture of the tracer diffusion in crowded environments.
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Affiliation(s)
- O Bénichou
- Sorbonne Université, CNRS, Laboratoire de Physique Théorique de la Matière Condensée (UMR 7600), 4 Place Jussieu, 75252 Paris Cedex 05, France
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10
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Avena L, Blondel O, Faggionato A. Analysis of random walks in dynamic random environments viaL2-perturbations. Stoch Process Their Appl 2018. [DOI: 10.1016/j.spa.2017.11.010] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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11
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Chatterjee AK, Basu U, Mohanty PK. Negative differential mobility in interacting particle systems. Phys Rev E 2018; 97:052137. [PMID: 29906917 DOI: 10.1103/physreve.97.052137] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2017] [Indexed: 11/07/2022]
Abstract
Driven particles in the presence of crowded environment, obstacles, or kinetic constraints often exhibit negative differential mobility (NDM) due to their decreased dynamical activity. Based on the empirical studies of conserved lattice gas model, two species exclusion model and other interacting particle systems we propose a new mechanism for complex many-particle systems where slowing down of certain non-driven degrees of freedom by the external field can give rise to NDM. To prove that the slowing down of the non-driven degrees is indeed the underlying cause, we consider several driven diffusive systems including two species exclusion models, misanthrope process, and show from the exact steady state results that NDM indeed appears when some non-driven modes are slowed down deliberately. For clarity, we also provide a simple pedagogical example of two interacting random walkers on a ring which conforms to the proposed scenario.
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Affiliation(s)
- Amit Kumar Chatterjee
- CMP Division, Saha Institute of Nuclear Physics, HBNI, 1/AF Bidhan Nagar, Kolkata 700064, India
| | - Urna Basu
- LPTMS, CNRS, Universitè Paris-Sud, Université Paris-Saclay, 91405 Orsay, France
| | - P K Mohanty
- CMP Division, Saha Institute of Nuclear Physics, HBNI, 1/AF Bidhan Nagar, Kolkata 700064, India
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12
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Leitmann S, Schwab T, Franosch T. Time-dependent perpendicular fluctuations in the driven lattice Lorentz gas. Phys Rev E 2018; 97:022101. [PMID: 29548093 DOI: 10.1103/physreve.97.022101] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2017] [Indexed: 11/07/2022]
Abstract
We present results for the fluctuations of the displacement of a tracer particle on a planar lattice pulled by a step force in the presence of impenetrable, immobile obstacles. The fluctuations perpendicular to the applied force are evaluated exactly in first order of the obstacle density for arbitrarily strong pulling and all times. The complex time-dependent behavior is analyzed in terms of the diffusion coefficient, local exponent, and the non-Skellam parameter, which quantifies deviations from the dynamics on the lattice in the absence of obstacles. The non-Skellam parameter along the force is analyzed in terms of an asymptotic model and reveals a power-law growth for intermediate times.
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Affiliation(s)
- Sebastian Leitmann
- Institut für Theoretische Physik, Universität Innsbruck, Technikerstraße 21A, A-6020 Innsbruck, Austria
| | - Thomas Schwab
- Institut für Theoretische Physik, Universität Innsbruck, Technikerstraße 21A, A-6020 Innsbruck, Austria
| | - Thomas Franosch
- Institut für Theoretische Physik, Universität Innsbruck, Technikerstraße 21A, A-6020 Innsbruck, Austria
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13
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Reichhardt C, Reichhardt CJO. Negative differential mobility and trapping in active matter systems. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2018; 30:015404. [PMID: 29165323 DOI: 10.1088/1361-648x/aa9c5f] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Using simulations, we examine the average velocity as a function of applied drift force for active matter particles moving through a random obstacle array. We find that for low drift force, there is an initial flow regime where the mobility increases linearly with drive, while for higher drift forces a regime of negative differential mobility appears in which the velocity decreases with increasing drive due to the trapping of active particles behind obstacles. A fully clogged regime exists at very high drift forces when all the particles are permanently trapped behind obstacles. We find for increasing activity that the overall mobility is nonmonotonic, with an enhancement of the mobility for small levels of activity and a decrease in mobility for large activity levels. We show how these effects evolve as a function of disk and obstacle density, active run length, drift force, and motor force.
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Affiliation(s)
- C Reichhardt
- Theoretical Division and Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, NM 87545, United States of America
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14
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Vasilyev OA, Bénichou O, Mejía-Monasterio C, Weeks ER, Oshanin G. Cooperative behavior of biased probes in crowded interacting systems. SOFT MATTER 2017; 13:7617-7624. [PMID: 28976526 DOI: 10.1039/c7sm00865a] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
We study, via extensive numerical simulations, dynamics of a crowded mixture of mutually interacting (with a short-range repulsive potential) colloidal particles immersed in a suspending solvent, acting as a heat bath. The mixture consists of a majority component - neutrally buoyant colloids subject to internal stimuli only, and a minority component - biased probes (BPs) also subject to a constant force. In such a system each of the BPs alters the distribution of the colloidal particles in its vicinity, driving their spatial distribution out of equilibrium. This induces effective long-range interactions and multi-tag correlations between the BPs, mediated by an out-of-equilibrium majority component, and prompts the BPs to move collectively assembling in clusters. We analyse the size-distribution of the self-assembling clusters in the steady-state, their specific force-velocity relations and also properties of the effective interactions emerging between the BPs.
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Affiliation(s)
- Oleg A Vasilyev
- Max-Planck-Institut für Intelligente Systeme, Heisenbergstr. 3, D-70569 Stuttgart, Germany
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15
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Leitmann S, Franosch T. Time-Dependent Fluctuations and Superdiffusivity in the Driven Lattice Lorentz Gas. PHYSICAL REVIEW LETTERS 2017; 118:018001. [PMID: 28106412 DOI: 10.1103/physrevlett.118.018001] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2016] [Indexed: 06/06/2023]
Abstract
We consider a tracer particle on a lattice in the presence of immobile obstacles. Starting from equilibrium, a force pulling on the particle is switched on, driving the system to a new stationary state. We solve for the complete transient dynamics of the fluctuations of the tracer position along the direction of the force. The analytic result, exact in first order of the obstacle density and for arbitrarily strong driving, is compared to stochastic simulations. Upon strong driving, the fluctuations grow superdiffusively for intermediate times; however, they always become diffusive in the stationary state. The diffusion constant is nonanalytic for small driving and is enhanced by orders of magnitude by increasing the force.
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Affiliation(s)
- Sebastian Leitmann
- Institut für Theoretische Physik, Universität Innsbruck, Technikerstraße 21A, A-6020 Innsbruck, Austria
| | - Thomas Franosch
- Institut für Theoretische Physik, Universität Innsbruck, Technikerstraße 21A, A-6020 Innsbruck, Austria
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16
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Wulfert R, Seifert U, Speck T. Discontinuous thinning in active microrheology of soft complex matter. Phys Rev E 2016; 94:062610. [PMID: 28085442 DOI: 10.1103/physreve.94.062610] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2016] [Indexed: 06/06/2023]
Abstract
Employing theory and numerical simulations, we demonstrate discontinuous force thinning due to the driven motion of an external probe in a host medium. We consider two cases: an ideal structureless medium (modeling ultrasoft materials such as polymer melts) and a dilute bath of interacting repulsive particles. When the driving of the probe exceeds a critical force, the microviscosity of the medium drops abruptly by about an order of magnitude. This phenomenon occurs for strong attractive interactions between a large probe and a sufficiently dense host medium.
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Affiliation(s)
- R Wulfert
- II. Institut für Theoretische Physik, Universität Stuttgart, Pfaffenwaldring 57, 70550 Stuttgart, Germany
| | - U Seifert
- II. Institut für Theoretische Physik, Universität Stuttgart, Pfaffenwaldring 57, 70550 Stuttgart, Germany
| | - T Speck
- Institut für Physik, Johannes Gutenberg-Universität Mainz, Staudingerweg 7-9, 55128 Mainz, Germany
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17
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Sarracino A, Cecconi F, Puglisi A, Vulpiani A. Nonlinear Response of Inertial Tracers in Steady Laminar Flows: Differential and Absolute Negative Mobility. PHYSICAL REVIEW LETTERS 2016; 117:174501. [PMID: 27824440 DOI: 10.1103/physrevlett.117.174501] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2016] [Indexed: 06/06/2023]
Abstract
We study the mobility and the diffusion coefficient of an inertial tracer advected by a two-dimensional incompressible laminar flow, in the presence of thermal noise and under the action of an external force. We show, with extensive numerical simulations, that the force-velocity relation for the tracer, in the nonlinear regime, displays complex and rich behaviors, including negative differential and absolute mobility. These effects rely upon a subtle coupling between inertia and applied force that induces the tracer to persist in particular regions of phase space with a velocity opposite to the force. The relevance of this coupling is revisited in the framework of nonequilibrium response theory, applying a generalized Einstein relation to our system. The possibility of experimental observation of these results is also discussed.
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Affiliation(s)
- A Sarracino
- CNR-ISC and Dipartimento di Fisica, Sapienza Università di Roma, piazzale A. Moro 2, 00185 Roma, Italy
| | - F Cecconi
- CNR-ISC and Dipartimento di Fisica, Sapienza Università di Roma, piazzale A. Moro 2, 00185 Roma, Italy
| | - A Puglisi
- CNR-ISC and Dipartimento di Fisica, Sapienza Università di Roma, piazzale A. Moro 2, 00185 Roma, Italy
| | - A Vulpiani
- Dipartimento di Fisica, Sapienza Università di Roma, piazzale A. Moro 2, 00185 Roma, Italy
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18
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Speck T. Thermodynamic formalism and linear response theory for nonequilibrium steady states. Phys Rev E 2016; 94:022131. [PMID: 27627270 DOI: 10.1103/physreve.94.022131] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2016] [Indexed: 11/07/2022]
Abstract
We study the linear response in systems driven away from thermal equilibrium into a nonequilibrium steady state with nonvanishing entropy production rate. A simple derivation of a general response formula is presented under the condition that the generating function describes a transformation that (to lowest order) preserves normalization and thus describes a physical stochastic process. For Markov processes we explicitly construct the conjugate quantities and discuss their relation with known response formulas. Emphasis is put on the formal analogy with thermodynamic potentials and some consequences are discussed.
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Affiliation(s)
- Thomas Speck
- Institut für Physik, Johannes Gutenberg-Universität Mainz, Staudingerweg 7-9, 55128 Mainz, Germany
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19
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Gradenigo G, Bertin E, Biroli G. Field-induced superdiffusion and dynamical heterogeneity. Phys Rev E 2016; 93:060105. [PMID: 27415189 DOI: 10.1103/physreve.93.060105] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2016] [Indexed: 06/06/2023]
Abstract
By analyzing two kinetically constrained models of supercooled liquids we show that the anomalous transport of a driven tracer observed in supercooled liquids is another facet of the phenomenon of dynamical heterogeneity. We focus on the Fredrickson-Andersen and the Bertin-Bouchaud-Lequeux models. By numerical simulations and analytical arguments we demonstrate that the violation of the Stokes-Einstein relation and the field-induced superdiffusion observed during a long preasymptotic regime have the same physical origin: while a fraction of probes do not move, others jump repeatedly because they are close to local mobile regions. The anomalous fluctuations observed out of equilibrium in the presence of a pulling force ε,σ_{x}^{2}(t)=〈x_{ε}^{2}(t)〉-〈x_{ε}(t)〉^{2}∼t^{3/2}, which are accompanied by the asymptotic decay α_{ε}(t)∼t^{-1/2} of the non-Gaussian parameter from nontrivial values to zero, are due to the splitting of the probes population in the two (mobile and immobile) groups and to dynamical correlations, a mechanism expected to happen generically in supercooled liquids.
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Affiliation(s)
- Giacomo Gradenigo
- Université Grenoble Alpes, LIPHY, F-38000 Grenoble, France
- CNRS, LIPHY, F-38000 Grenoble, France
| | - Eric Bertin
- Université Grenoble Alpes, LIPHY, F-38000 Grenoble, France
- CNRS, LIPHY, F-38000 Grenoble, France
| | - Giulio Biroli
- IPhT, Université Paris Saclay, CEA, CNRS, F-91191 Gif-sur-Yvette Cedex, France
- Laboratoire de Physique Statistique, Ecole Normale Supérieure, PSL Research University, Université Paris Diderot Sorbonne Paris-Cité, Sorbonne Universités UPMC Université Paris 06, CNRS, 24 rue Lhomond, 75005 Paris, France
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20
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Bénichou O, Illien P, Oshanin G, Sarracino A, Voituriez R. Nonlinear response and emerging nonequilibrium microstructures for biased diffusion in confined crowded environments. Phys Rev E 2016; 93:032128. [PMID: 27078313 DOI: 10.1103/physreve.93.032128] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2015] [Indexed: 06/05/2023]
Abstract
We study analytically the dynamics and the microstructural changes of a host medium caused by a driven tracer particle moving in a confined, quiescent molecular crowding environment. Imitating typical settings of active microrheology experiments, we consider here a minimal model comprising a geometrically confined lattice system (a two-dimensional striplike or a three-dimensional capillary-like system) populated by two types of hard-core particles with stochastic dynamics (a tracer particle driven by a constant external force and bath particles moving completely at random). Resorting to a decoupling scheme, which permits us to go beyond the linear-response approximation (Stokes regime) for arbitrary densities of the lattice gas particles, we determine the force-velocity relation for the tracer particle and the stationary density profiles of the host medium particles around it. These results are validated a posteriori by extensive numerical simulations for a wide range of parameters. Our theoretical analysis reveals two striking features: (a) We show that, under certain conditions, the terminal velocity of the driven tracer particle is a nonmonotonic function of the force, so in some parameter range the differential mobility becomes negative, and (b) the biased particle drives the whole system into a nonequilibrium steady state with a stationary particle density profile past the tracer, which decays exponentially, in sharp contrast with the behavior observed for unbounded lattices, where an algebraic decay is known to take place.
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Affiliation(s)
- O Bénichou
- Laboratoire de Physique Théorique de la Matière Condensée, UPMC, CNRS UMR 7600, Sorbonne Universités, 4 Place Jussieu, 75252 Paris Cedex 05, France
| | - P Illien
- Laboratoire de Physique Théorique de la Matière Condensée, UPMC, CNRS UMR 7600, Sorbonne Universités, 4 Place Jussieu, 75252 Paris Cedex 05, France
- Rudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford OX1 3NP, United Kingdom
- Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - G Oshanin
- Laboratoire de Physique Théorique de la Matière Condensée, UPMC, CNRS UMR 7600, Sorbonne Universités, 4 Place Jussieu, 75252 Paris Cedex 05, France
| | - A Sarracino
- Laboratoire de Physique Théorique de la Matière Condensée, UPMC, CNRS UMR 7600, Sorbonne Universités, 4 Place Jussieu, 75252 Paris Cedex 05, France
- CNR-ISC and Dipartimento di Fisica, Sapienza Università di Roma, p.le A. Moro 2, 00185 Roma, Italy
| | - R Voituriez
- Laboratoire de Physique Théorique de la Matière Condensée, UPMC, CNRS UMR 7600, Sorbonne Universités, 4 Place Jussieu, 75252 Paris Cedex 05, France
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21
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Baiesi M, Stella AL, Vanderzande C. Role of trapping and crowding as sources of negative differential mobility. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 92:042121. [PMID: 26565182 DOI: 10.1103/physreve.92.042121] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2015] [Indexed: 06/05/2023]
Abstract
Increasing the crowding in an environment does not necessarily trigger negative differential mobility of strongly pushed particles. Moreover, the choice of the model, in particular the kind of microscopic jump rates, may be very relevant in determining the mobility. We support these points via simple examples and we therefore address recent claims saying that crowding in an environment is likely to promote negative differential mobility. Trapping of tagged particles enhanced by increasing the force remains the mechanism determining a drift velocity not monotonous in the driving force.
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Affiliation(s)
- Marco Baiesi
- Department of Physics and Astronomy, University of Padova, Via Marzolo 8, I-35131 Padova, Italy
- INFN, Sezione di Padova, Via Marzolo 8, I-35131 Padova, Italy
| | - Attilio L Stella
- Department of Physics and Astronomy, University of Padova, Via Marzolo 8, I-35131 Padova, Italy
- INFN, Sezione di Padova, Via Marzolo 8, I-35131 Padova, Italy
| | - Carlo Vanderzande
- Faculteit Wetenschappen, Hasselt University, 3590 Diepenbeek, Belgium
- Instituut theoretische fysica, Katholieke Universiteit Leuven, 3001 Leuven, Belgium
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22
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Bénichou O, Illien P, Oshanin G, Sarracino A, Voituriez R. Microscopic theory for negative differential mobility in crowded environments. PHYSICAL REVIEW LETTERS 2014; 113:268002. [PMID: 25615388 DOI: 10.1103/physrevlett.113.268002] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2014] [Indexed: 06/04/2023]
Abstract
We study the behavior of the stationary velocity of a driven particle in an environment of mobile hard-core obstacles. Based on a lattice gas model, we demonstrate analytically that the drift velocity can exhibit a nonmonotonic dependence on the applied force, and show quantitatively that such negative differential mobility (NDM), observed in various physical contexts, is controlled by both the density and diffusion time scale of the obstacles. Our study unifies recent numerical and analytical results obtained in specific regimes, and makes it possible to determine analytically the region of the full parameter space where NDM occurs. These results suggest that NDM could be a generic feature of biased (or active) transport in crowded environments.
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Affiliation(s)
- O Bénichou
- Sorbonne Universités, UPMC Univ Paris 06, UMR 7600, LPTMC, F-75005 Paris, France and CNRS, UMR 7600, Laboratoire de Physique Théorique de la Matiére Condensée, F-75005 Paris, France
| | - P Illien
- Sorbonne Universités, UPMC Univ Paris 06, UMR 7600, LPTMC, F-75005 Paris, France and CNRS, UMR 7600, Laboratoire de Physique Théorique de la Matiére Condensée, F-75005 Paris, France
| | - G Oshanin
- Sorbonne Universités, UPMC Univ Paris 06, UMR 7600, LPTMC, F-75005 Paris, France and CNRS, UMR 7600, Laboratoire de Physique Théorique de la Matiére Condensée, F-75005 Paris, France
| | - A Sarracino
- Sorbonne Universités, UPMC Univ Paris 06, UMR 7600, LPTMC, F-75005 Paris, France and CNRS, UMR 7600, Laboratoire de Physique Théorique de la Matiére Condensée, F-75005 Paris, France
| | - R Voituriez
- Sorbonne Universités, UPMC Univ Paris 06, UMR 7600, LPTMC, F-75005 Paris, France and CNRS, UMR 7600, Laboratoire de Physique Théorique de la Matiére Condensée, F-75005 Paris, France
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23
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Illien P, Bénichou O, Oshanin G, Voituriez R. Velocity anomaly of a driven tracer in a confined crowded environment. PHYSICAL REVIEW LETTERS 2014; 113:030603. [PMID: 25083625 DOI: 10.1103/physrevlett.113.030603] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2014] [Indexed: 06/03/2023]
Abstract
We consider a discrete model in which a tracer performs a random walk biased by an external force, in a dense bath of particles performing symmetric random walks constrained by hard-core interactions. We reveal the emergence of a striking velocity anomaly in confined geometries: in quasi-1D systems such as stripes or capillaries, the velocity of the tracer displays a long-lived plateau before ultimately dropping to a lower value. We develop an analytical solution that quantitatively accounts for this intriguing behavior. Our analysis suggests that such a velocity anomaly could be a generic feature of driven dynamics in quasi-1D crowded systems.
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Affiliation(s)
- Pierre Illien
- Laboratoire de Physique Théorique de la Matière Condensée (UMR CNRS 7600), Université Pierre et Marie Curie, 4 Place Jussieu, 75255 Paris Cedex, France
| | - Olivier Bénichou
- Laboratoire de Physique Théorique de la Matière Condensée (UMR CNRS 7600), Université Pierre et Marie Curie, 4 Place Jussieu, 75255 Paris Cedex, France
| | - Gleb Oshanin
- Laboratoire de Physique Théorique de la Matière Condensée (UMR CNRS 7600), Université Pierre et Marie Curie, 4 Place Jussieu, 75255 Paris Cedex, France
| | - Raphaël Voituriez
- Laboratoire de Physique Théorique de la Matière Condensée (UMR CNRS 7600), Université Pierre et Marie Curie, 4 Place Jussieu, 75255 Paris Cedex, France and Laboratoire Jean Perrin, FRE 3231 CNRS /UPMC, 4 Place Jussieu, 75255 Paris Cedex, France
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24
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Puertas AM, Voigtmann T. Microrheology of colloidal systems. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2014; 26:243101. [PMID: 24848328 DOI: 10.1088/0953-8984/26/24/243101] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Microrheology was proposed almost twenty years ago as a technique to obtain rheological properties in soft matter from the microscopic motion of colloidal tracers used as probes, either freely diffusing in the host medium, or subjected to external forces. The former case is known as passive microrheology, and is based on generalizations of the Stokes-Einstein relation between the friction experienced by the probe and the host-fluid viscosity. The latter is termed active microrheology, and extends the measurement of the friction coefficient to the nonlinear-response regime of strongly driven probes. In this review article, we discuss theoretical models available in the literature for both passive and active microrheology, focusing on the case of single-probe motion in model colloidal host media. A brief overview of the theory of passive microrheology is given, starting from the work of Mason and Weitz. Further developments include refined models of the host suspension beyond that of a Newtonian-fluid continuum, and the investigation of probe-size effects. Active microrheology is described starting from microscopic equations of motion for the whole system including both the host-fluid particles and the tracer; the many-body Smoluchowski equation for the case of colloidal suspensions. At low fluid densities, this can be simplified to a two-particle equation that allows the calculation of the friction coefficient with the input of the density distribution around the tracer, as shown by Brady and coworkers. The results need to be upscaled to agree with simulations at moderate density, in both the case of pulling the tracer with a constant force or dragging it at a constant velocity. The full many-particle equation has been tackled by Fuchs and coworkers, using a mode-coupling approximation and the scheme of integration through transients, valid at high densities. A localization transition is predicted for a probe embedded in a glass-forming host suspension. The nonlinear probe-friction coefficient is calculated from the tracer's position correlation function. Computer simulations show qualitative agreement with the theory, but also some unexpected features, such as superdiffusive motion of the probe related to the breaking of nearest-neighbor cages. We conclude with some perspectives and future directions of theoretical models of microrheology.
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Affiliation(s)
- A M Puertas
- Group of Complex Fluids Physics, Department of Applied Physics, University of Almeria, 04120 Almeria, Spain
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25
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Bénichou O, Bodrova A, Chakraborty D, Illien P, Law A, Mejía-Monasterio C, Oshanin G, Voituriez R. Geometry-induced superdiffusion in driven crowded systems. PHYSICAL REVIEW LETTERS 2013; 111:260601. [PMID: 24483787 DOI: 10.1103/physrevlett.111.260601] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2013] [Indexed: 06/03/2023]
Abstract
Recent molecular dynamics simulations of glass-forming liquids revealed superdiffusive fluctuations associated with the position of a tracer particle (TP) driven by an external force. Such an anomalous response, whose mechanism remains elusive, has been observed up to now only in systems close to their glass transition, suggesting that this could be one of its hallmarks. Here, we show that the presence of superdiffusion is in actual fact much more general, provided that the system is crowded and geometrically confined. We present and solve analytically a minimal model consisting of a driven TP in a dense, crowded medium in which the motion of particles is mediated by the diffusion of packing defects, called vacancies. For such nonglass-forming systems, our analysis predicts a long-lived superdiffusion which ultimately crosses over to giant diffusive behavior. We find that this trait is present in confined geometries, for example long capillaries and stripes, and emerges as a universal response of crowded environments to an external force. These findings are confirmed by numerical simulations of systems as varied as lattice gases, dense liquids, and granular fluids.
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Affiliation(s)
- Olivier Bénichou
- Laboratoire de Physique Théorique de la Matière Condensée (UMR CNRS 7600), Université Pierre et Marie Curie, 4 Place Jussieu, 75255 Paris Cedex, France
| | - Anna Bodrova
- Department of Physics, Moscow State University, Moscow 119991, Russia
| | - Dipanjan Chakraborty
- Max-Planck-Institut für Intelligente Systeme, Heisenbergstr. 3, 70569 Stuttgart, Germany, and IV Institut für Theoretische Physik, Universität Stuttgart, Pfaffenwaldring 57, 70569 Stuttgart, Germany
| | - Pierre Illien
- Laboratoire de Physique Théorique de la Matière Condensée (UMR CNRS 7600), Université Pierre et Marie Curie, 4 Place Jussieu, 75255 Paris Cedex, France
| | - Adam Law
- Max-Planck-Institut für Intelligente Systeme, Heisenbergstr. 3, 70569 Stuttgart, Germany, and IV Institut für Theoretische Physik, Universität Stuttgart, Pfaffenwaldring 57, 70569 Stuttgart, Germany
| | - Carlos Mejía-Monasterio
- Laboratory of Physical Properties, Technical University of Madrid, Avenida Complutense s/n, 28040 Madrid, Spain, and Department of Mathematics and Statistics, University of Helsinki, P.O. Box 68, FIN-00014 Helsinki, Finland
| | - Gleb Oshanin
- Laboratoire de Physique Théorique de la Matière Condensée (UMR CNRS 7600), Université Pierre et Marie Curie, 4 Place Jussieu, 75255 Paris Cedex, France
| | - Raphaël Voituriez
- Laboratoire de Physique Théorique de la Matière Condensée (UMR CNRS 7600), Université Pierre et Marie Curie, 4 Place Jussieu, 75255 Paris Cedex, France and Laboratoire Jean Perrin, FRE 3231 CNRS/UPMC, 4 Place Jussieu, 75255 Paris Cedex, France
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26
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Wang B, Kuo J, Granick S. Bursts of active transport in living cells. PHYSICAL REVIEW LETTERS 2013; 111:208102. [PMID: 24289710 DOI: 10.1103/physrevlett.111.208102] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2013] [Revised: 09/08/2013] [Indexed: 06/02/2023]
Abstract
We show, using a large new data set, that the temporally resolved speed of active cargo transport in living cells follows a scaling law over several decades of time and length. The statistical regularities display a time-averaged shape that we interpret to reflect stress buildup, followed by rapid release. The scaling power law agrees quantitatively with those reported in inanimate systems (jammed colloids and granular media, and magnetic Barkhausen noise), suggesting a common origin in pushing through a crowded environment in a weak force regime. The implied regulation of the speed of active cellular transport due to environmental obstruction results in bursts of speed and acceleration. These findings extend the classical notion of molecular crowding.
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Affiliation(s)
- Bo Wang
- Department of Materials Science, University of Illinois, Urbana, Illinois 61801, USA
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27
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Accary JB, Teboul V. How does the isomerization rate affect the photoisomerization-induced transport properties of a doped molecular glass-former? J Chem Phys 2013; 139:034501. [DOI: 10.1063/1.4813410] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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28
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Winter D, Horbach J. Nonlinear active micro-rheology in a glass-forming soft-sphere mixture. J Chem Phys 2013; 138:12A512. [DOI: 10.1063/1.4770335] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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29
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Schroer CFE, Heuer A. Microrheology of supercooled liquids in terms of a continuous time random walk. J Chem Phys 2013; 138:12A518. [DOI: 10.1063/1.4772627] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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30
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Schroer CFE, Heuer A. Anomalous diffusion of driven particles in supercooled liquids. PHYSICAL REVIEW LETTERS 2013; 110:067801. [PMID: 23432309 DOI: 10.1103/physrevlett.110.067801] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2012] [Indexed: 06/01/2023]
Abstract
We perform nonequilibrium dynamics simulations of a binary Lennard-Jones mixture in which an external force is applied on a single tagged particle. For the diffusive properties of this particle parallel to the force, superdiffusive behavior at intermediate times as well as giant long-time diffusivity is observed. A quantitative description of this nontrivial behavior is given by a continuous time random walk analysis of the system in configuration space. We further demonstrate that the same physical properties which are responsible for the superdiffusivity in nonequilibrium systems also determine the non-Gaussian parameter in equilibrium systems.
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Affiliation(s)
- Carsten F E Schroer
- Institut für physikalische Chemie, Westfälische Wilhelms-Universität Münster, Corrensstrasse 28/30, 48149 Münster, Germany.
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31
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Libál A, Csíki BM, Reichhardt CJO, Reichhardt C. Colloidal lattice shearing and rupturing with a driven line of particles. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 87:022308. [PMID: 23496517 DOI: 10.1103/physreve.87.022308] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2012] [Indexed: 06/01/2023]
Abstract
We examine the dynamics of two-dimensional colloidal systems using numerical simulations of a system with a drive applied to a thin region in the middle of the sample to produce a local shear. For a monodisperse colloidal assembly, we find a well-defined decoupling transition separating a regime of elastic motion from a plastic phase where the driven particles break away or decouple from the bulk particles and produce a shear band. For a bidisperse assembly, the onset of a bulk disordering transition coincides with the broadening of the shear band. We identify several distinct dynamical regimes that are correlated with features in the velocity-force curves. As a function of bidispersity, the decoupling force shows a nonmonotonic behavior associated with features in the noise fluctuations, power spectra, and bulk velocity profiles. When pinning is added in the bulk, we find that the shear band regions can become more localized, causing a decoupling of the driven particles from the bulk particles. For a system with thermal noise and no pinning, the shear band region becomes more extended and the average velocity of the driven particles drops at the thermal disordering transition of the bulk system.
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Affiliation(s)
- A Libál
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
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32
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Ladadwa I, Heuer A. Nonlinear response and crowding effects in microrheology. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 87:012302. [PMID: 23410326 DOI: 10.1103/physreve.87.012302] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2012] [Revised: 10/31/2012] [Indexed: 06/01/2023]
Abstract
The mobility of tagged particles in a microrheological setup has been investigated via molecular dynamics simulations of a three-dimensional Lennard-Jones binary mixture. After coupling a small number of particles to a constant external driving force, the drift velocity and other observables of the dragged probe particles are reported in the linear and nonlinear response regime. In the nonlinear regime significant crowding effects are observed, thereby creating stringlike structures. Formation of the strings further enhances the nonlinear effects. A systematic study of these effects' dependence on temperature and total number of driven probe atoms is presented.
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Affiliation(s)
- I Ladadwa
- Westfälische Wilhelms-Universität Münster, Institut für physikalische Chemie, Corrensstrasse 30, 48149 Münster, Germany.
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33
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Turci F, Pitard E, Sellitto M. Driving kinetically constrained models into nonequilibrium steady states: Structural and slow transport properties. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 86:031112. [PMID: 23030871 DOI: 10.1103/physreve.86.031112] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2012] [Indexed: 06/01/2023]
Abstract
Complex fluids in shear flow and biased dynamics in crowded environments exhibit counterintuitive features which are difficult to address both at a theoretical level and by molecular dynamic simulations. To understand some of these features we study a schematic model of a highly viscous liquid, the two-dimensional Kob-Andersen kinetically constrained model, driven into nonequilibrium steady states by a uniform non-Hamiltonian force. We present a detailed numerical analysis of the microscopic behavior of the model, including transversal and longitudinal spatial correlations and dynamic heterogeneities. In particular, we show that at high particle density the transition from positive to negative resistance regimes in the current vs field relation can be explained via the emergence of nontrivial structures that intermittently trap the particles and slow down the dynamics. We relate such spatial structures to the current vs field relation in the different transport regimes.
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Affiliation(s)
- Francesco Turci
- Laboratoire Charles Coulomb, Université Montpellier II and CNRS, 34095 Montpellier, France
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34
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Winter D, Horbach J, Virnau P, Binder K. Active nonlinear microrheology in a glass-forming Yukawa fluid. PHYSICAL REVIEW LETTERS 2012; 108:028303. [PMID: 22324717 DOI: 10.1103/physrevlett.108.028303] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2011] [Indexed: 05/31/2023]
Abstract
A molecular dynamics computer simulation of a glass-forming Yukawa mixture is used to study the anisotropic dynamics of a single particle pulled by a constant force. Beyond linear response, a scaling regime is found where a force-temperature superposition principle of a Peclet number holds. In the latter regime, the diffusion dynamics perpendicular to the force can be mapped on the equilibrium dynamics in terms of an effective temperature, whereas parallel to the force a superdiffusive behavior is seen in the long-time limit. This behavior is associated with a hopping motion from cage to cage and can be qualitatively understood by a simple trap model.
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Affiliation(s)
- D Winter
- Institut für Physik, Johannes Gutenberg-Universität Mainz, Mainz, Germany
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35
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Wilson LG, Poon WCK. Small-world rheology: an introduction to probe-based active microrheology. Phys Chem Chem Phys 2011; 13:10617-30. [PMID: 21556428 DOI: 10.1039/c0cp01564d] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We introduce active, probe-based microrheological techniques for measuring the flow and deformation of complex fluids. These techniques are ideal for mechanical characterization either when little sample is available, or when samples show significant spatial heterogeneity. We review recent results, paying particular attention to comparing and contrasting rheological parameters obtained from micro- and macro-rheological techniques.
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Affiliation(s)
- Laurence G Wilson
- SUPA and School of Physics and Astronomy, The University of Edinburgh, Kings Buildings, Mayfield Road, Edinburgh EH9 3JZ, UK
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36
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Li JH. Noise-induced multi-decrease and multi-increase of net voltage in Josephson junctions. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2010; 22:115702. [PMID: 21389473 DOI: 10.1088/0953-8984/22/11/115702] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
In this paper, we investigate the net voltage in the Josephson junction subject to a thermal noise, a dc constant bias electric current and an ac time-periodic electric drive for the overdamped case and underdamped case simultaneously. It is shown that, by increasing the thermal noise strength, the net voltage can be decreased and increased several times as a function of the driving frequency. In addition, noise-enhanced stability is found for the net voltage of the junction.
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Affiliation(s)
- Jing-hui Li
- Faculty of Science, Ningbo University, Ningbo 315211, People's Republic of China
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37
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Affiliation(s)
- David Chandler
- Department of Chemistry, University of California, Berkeley, California 94720;
| | - Juan P. Garrahan
- School of Physics and Astronomy, University of Nottingham, Nottingham NG7 2RD, United Kingdom;
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38
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Sellitto M. Fluctuation relation and heterogeneous superdiffusion in glassy transport. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2009; 80:011134. [PMID: 19658680 DOI: 10.1103/physreve.80.011134] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2009] [Indexed: 05/28/2023]
Abstract
Current fluctuations and related steady-state fluctuation relation are investigated in simple coarse-grained lattice-gas analogs of a non-Newtonian fluid driven by a constant and uniform force field in two regimes of small entropy production. Non-Gaussian current fluctuations and deviations from fluctuation relation are observed and related to the existence of growing amorphous correlations and heterogeneous anomalous diffusion regimes.
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Affiliation(s)
- Mauro Sellitto
- Laboratoire de Physique et Mécanique des Milieux Hétérogènes, ESPCI, 10 rue Vauquelin, 75231 Paris Cedex 5, France
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39
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Gazuz I, Puertas AM, Voigtmann T, Fuchs M. Active and nonlinear microrheology in dense colloidal suspensions. PHYSICAL REVIEW LETTERS 2009; 102:248302. [PMID: 19659052 DOI: 10.1103/physrevlett.102.248302] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2008] [Indexed: 05/28/2023]
Abstract
We present a first-principles theory for the active nonlinear microrheology of colloidal model system; for a constant external force on a spherical probe particle embedded in a dense host dispersion, neglecting hydrodynamic interactions, we derive an exact expression for the friction. Within mode-coupling theory, we discuss the threshold external force needed to delocalize the probe from a host glass, and its relation to strong nonlinear velocity-force curves in a host fluid. Experimental microrheology data and simulations, which we performed, are explained with a simplified model.
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Affiliation(s)
- I Gazuz
- Fachbereich Physik, Universität Konstanz, 78457 Konstanz, Germany
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Wilson LG, Harrison AW, Schofield AB, Arlt J, Poon WCK. Passive and Active Microrheology of Hard-sphere Colloids. J Phys Chem B 2009; 113:3806-12. [DOI: 10.1021/jp8079028] [Citation(s) in RCA: 83] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- L. G. Wilson
- SUPA, COSMIC and School of Physics and Astronomy, The University of Edinburgh, Kings Buildings, Mayfield Road, Edinburgh EH9 3JZ, United Kingdom
| | - A. W. Harrison
- SUPA, COSMIC and School of Physics and Astronomy, The University of Edinburgh, Kings Buildings, Mayfield Road, Edinburgh EH9 3JZ, United Kingdom
| | - A. B. Schofield
- SUPA, COSMIC and School of Physics and Astronomy, The University of Edinburgh, Kings Buildings, Mayfield Road, Edinburgh EH9 3JZ, United Kingdom
| | - J. Arlt
- SUPA, COSMIC and School of Physics and Astronomy, The University of Edinburgh, Kings Buildings, Mayfield Road, Edinburgh EH9 3JZ, United Kingdom
| | - W. C. K. Poon
- SUPA, COSMIC and School of Physics and Astronomy, The University of Edinburgh, Kings Buildings, Mayfield Road, Edinburgh EH9 3JZ, United Kingdom
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Jack RL, Sollich P, Mayer P. Subdiffusive motion in kinetically constrained models. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2008; 78:061107. [PMID: 19256802 DOI: 10.1103/physreve.78.061107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2008] [Indexed: 05/27/2023]
Abstract
We discuss a kinetically constrained model in which real-valued local densities fluctuate in time, as introduced recently by Bertin, Bouchaud, and Lequeux. We show how the phenomenology of this model can be reproduced by an effective theory of mobility excitations propagating in a disordered environment. Both excitations and probe particles have subdiffusive motion, characterized by different exponents and operating on different time scales. We derive these exponents, showing that they depend continuously on one of the parameters of the model.
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Affiliation(s)
- Robert L Jack
- Department of Physics, University of Bath, Bath BA2 7AY, United Kingdom
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