Microscopic structural relaxation in a sheared supercooled colloidal liquid

Rearrangements during slow compression of a jammed two-dimensional emulsion

As amorphous materials get jammed, both geometric and dynamic heterogeneity are observed. We investigate the correlation between the local geometric heterogeneity and local rearrangements in a slowly compressed bidisperse quasi-two-dimensional emulsion system. The compression is driven by evaporation of the continuous phase and causes the area packing fraction to increase from 0.88 to 0.99. We quantify the structural heterogeneity of the system using the radical Voronoi tessellation following the method of Rieser et al. [Phys. Rev. Lett. 116, 088001 (2016)]0031-900710.1103/PhysRevLett.116.088001. We define two structural quantities characterizing local structure, the first of which considers nearest neighbors and the second of which includes information from second-nearest neighbors. We find that droplets in heterogeneous local regions are more likely to have local rearrangements. These rearrangements are generally T1 events where two droplets converge toward a void, and two droplets move away from the void to make room for the converging droplets. Thus, the presence of the voids tends to orient the T1 events. The presence of a correlation between the structural quantities and the rearrangement dynamics remains qualitatively unchanged over the entire range of packing fractions observed.

Effects of polydispersity on the plastic behaviors of dense two-dimensional granular systems under shear

We study particle-scale motion in sheared highly polydisperse amorphous materials, in which the largest particles are as much as ten times the size of the smallest. We find strikingly different behavior from the more commonly studied amorphous systems with low polydispersity. In particular, an analysis of the nonaffine motion of particles reveals qualitative differences between large and small particles: The smaller particles have dramatically more nonaffine motion, which is induced by the presence of the large particles. We characterize how the nonaffine motion changes from the low- to high-polydispersity regimes. We further demonstrate a quantitative way to distinguish between "large" and "small" particles in systems with broad distributions of particle sizes. A macroscopic consequence of the nonaffine motion is a decrease in the energy dissipation rate for highly polydisperse samples, which is due both to a geometric consequence of the changing jamming conditions for higher polydispersity and to the changing character of nonaffine motion.

Isomorphs in sheared binary Lennard-Jones glass: Transient response

We have studied shear deformation of binary Lennard-Jones glasses to investigate the extent to which the transient part of the stress strain curves is invariant when the thermodynamic state point is varied along an isomorph. Shear deformations were carried out on glass samples of varying stability, determined by cooling rate, and at varying strain rates, at state points deep in the glass. Density changes up to and exceeding a factor of two were made. We investigated several different methods for generating isomorphs but none of the previously developed methods could generate sufficiently precise isomorphs given the large density changes and nonequilibrium situation. Instead, the temperatures for these higher densities were chosen to give state points isomorphic to the starting state point by requiring the steady-state flow stress for isomorphic state points to be invariant in reduced units. In contrast to the steady-state flow stress, we find that the peak stress on the stress strain curve is not invariant. The peak stress decreases by a few percent for each ten percent increase in density, although the differences decrease with increasing density. Analysis of strain profiles and nonaffine motion during the transient phase suggests that the root of the changes in peak stress is a varying tendency to form shear bands, with the largest tendency occurring at the lowest densities. We suggest that this reflects the effective steepness of the potential; a higher effective steepness gives a greater tendency to form shear bands.

Label-free cell tracking enables collective motion phenotyping in epithelial monolayers

Collective cell migration is an umbrella term for a rich variety of cell behaviors, whose distinct character is important for biological function, notably for cancer metastasis. One essential feature of collective behavior is the motion of cells relative to their immediate neighbors. We introduce an AI-based pipeline to segment and track cell nuclei from phase-contrast images. Nuclei segmentation is based on a U-Net convolutional neural network trained on images with nucleus staining. Tracking, based on the Crocker-Grier algorithm, quantifies nuclei movement and allows for robust downstream analysis of collective motion. Because the AI algorithm required no new training data, our approach promises to be applicable to and yield new insights for vast libraries of existing collective motion images. In a systematic analysis of a cell line panel with oncogenic mutations, we find that the collective rearrangement metric, D²_min, which reflects non-affine motion, shows promise as an indicator of metastatic potential.

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Versatile AI algorithm identifies individual cell tracks in phase contrast images

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Motion of cells relative to nearby neighbors may indicate cancer progression

Quantifying local rearrangements in three-dimensional granular materials: Rearrangement measures, correlations, and relationship to stresses

Quantifying the ways in which local particle rearrangements contribute to macroscopic plasticity is one of the fundamental pursuits of granular mechanics and soft matter physics. Here we examine local rearrangements that occur naturally during the deformation of three samples of 3D granular materials subjected to distinct boundary conditions by employing in situ x-ray measurements of particle-resolved structure and stress. We focus on five distinct rearrangement measures, their statistics, interrelationships, contributions to macroscopic deformation, repeatability, and dependence on local structure and stress. Our most significant findings are that local rearrangements (1) are correlated on a scale of three to four particle diameters, (2) exhibit volumetric strain-shear strain and nonaffine displacement-rotation coupling, (3) exhibit correlations that suggest either rearrangement repeatability or that rearrangements span multiple steps of incremental sample strain, and (4) show little dependence on local stress but correlate with quantities describing local structure, such as porosity. Our results are presented in the context of relevant plasticity theories and are consistent with recent findings suggesting that local structure may play at least as important of a role as local stress in determining the nature of local rearrangements.

Dynamics phenotyping across length and time scales in collective cell migration

Processes in collective migration span many length and time scales. In this review, we focus on length scales ranging from tens of microns (single cells) to a few millimeters (cell clusters) and the motion of these cells and cell groups on time scales of minutes to hours. We focus on epithelial cell sheets and metrics of motion developed to measure migration phenotypes in this system. Comparisons between cell motion and fluid flows, facilitated by the popular image analysis technique particle image velocimetry, yield metrics that can be used to study migration across a range of length and time scales. Measuring collective cell migration across these scales provides a complex, quantitative phenotype useful for migration models, in particular those that compare and contrast collective cell migration to movement of particles near a transition to jamming. Contrasting the motion of epithelial cells and the jamming transition illustrates aspects of collective motion that can be attributed to the jammed character of cell clusters, and highlights aspects of collective behavior that likely involve active motility and cell-cell guidance. The application of multiple migration metrics, which span multiple scales of the system, thus allows us to link cell-scale signals and mechanics to collective behavior.

Rate Dependence of Elementary Rearrangements and Spatiotemporal Correlations in the 3D Flow of Soft Solids

We use a combination of confocal microscopy, rheology, and molecular dynamics simulations to investigate jammed emulsions under shear, by analyzing the 3D droplets rearrangements in the shear frame. Our quantitative analysis of local dynamics reveals elementary nonaffine rearrangements that underlie the onset of the flow at small strains. We find that the mechanism of unjamming and the upturn in the material flow curve are associated to a qualitative change in spatiotemporal correlations of such rearrangements with the applied shear rate. At high shear rates, droplet clusters follow coordinated, stringlike motion. Conversely, at low shear rates, the elementary nonaffine rearrangements exhibit longer-ranged correlations, with complex spatiotemporal patterns. The 3D microscopic details provide novel insights into the specific features of the material flow curve, common to a large class of technologically relevant soft disordered solids and new fundamental ingredients for constitutive models.

Strain heterogeneity in sheared colloids revealed by neutron scattering

Small-angle neutron scattering experiments reveal that the microscopic strain of sheared colloids is highly heterogeneous at the particle level.

Stable small bubble clusters in two-dimensional foams

Key features of the mechanical response of amorphous particulate materials, such as foams, emulsions, and granular media, to applied stress are determined by the frequency and size of particle rearrangements that occur as the system transitions from one mechanically stable state to another. This work describes coordinated experimental and computational studies of bubble rafts, which are quasi-two dimensional systems of bubbles confined to the air-water interface. We focus on small mechanically stable clusters of four, five, six, and seven bubbles with two different sizes with diameter ratio σ_L/σ_S ≃ 1.4. Focusing on small bubble clusters, which can be viewed as subsystems of a larger system, allows us to investigate the full ensemble of clusters that form, measure the respective frequencies with which the clusters occur, and determine the form of the bubble-bubble interactions. We emphasize several important results. First, for clusters with N > 5 bubbles, we find using discrete element simulations that short-range attractive interactions between bubbles give rise to a larger ensemble of distinct mechanically stable clusters compared to that generated by long-range attractive interactions. The additional clusters in systems with short-range attractions possess larger gaps between pairs of neighboring bubbles on the periphery of the clusters. The ensemble of bubble clusters observed in experiments is similar to the ensemble of clusters with long-range attractive interactions. We also compare the frequency with which each cluster occurs in simulations and experiments. We find that the cluster frequencies are extremely sensitive to the protocol used to generate them and only weakly correlated to the energy of the clusters.

Shear-induced reversibility of 2D colloidal suspensions in the presence of minimal thermal noise

The effects of minimal thermal noise on particle rearrangements in cyclically sheared colloidal suspensions are experimentally investigated using particle tracking methods. Our experimental model system consists of polystyrene microspheres adsorbed at an oil-water interface, in which the particles exhibit small but non-negligible Brownian motion. Experiments are performed on bidisperse (1.0 and 1.2 μm in diameter) systems, which form area fractions of 0.20 and 0.32 at the interface. We first characterize the thermal (Brownian) noise using particle diffusivities at quiescent states, and show that under our experimental flow conditions both systems (0.20 and 0.32 area fraction) behave as athermal, in the sense that the particle diffusion time scale is larger than the flow time scale. We then characterize particle rearrangements as a function of strain amplitude, and show that small but finite levels of thermal noise affect the reversibility dynamics, even in effectively athermal systems. Our data indicate that as thermal noise is slightly increased in a cyclically sheared athermal system, the fraction of reversible rearrangements is reduced, the reversible cycles become unstable, and the rearrangement hysteresis is significantly hindered.

A stress-controlled shear cell for small-angle light scattering and microscopy

We develop and test a stress-controlled, parallel plates shear cell that can be coupled to an optical microscope or a small angle light scattering setup, for simultaneous investigation of the rheological response and the microscopic structure of soft materials under an imposed shear stress. In order to minimize friction, the cell is based on an air bearing linear stage, the stress is applied through a contactless magnetic actuator, and the strain is measured through optical sensors. We discuss the contributions of inertia and of the small residual friction to the measured signal and demonstrate the performance of our device in both oscillating and step stress experiments on a variety of viscoelastic materials.

Intracellular imaging of quantum dots, gold, and iron oxide nanoparticles with associated endocytic pathways

Metallic nanoparticles (NP) have been used for biomedical applications especially for imaging. Compared to nonmetallic NP, metallic NP provide high contrast images because of their optical light scattering, magnetic resonance, X-ray absorption, or other physicochemical properties. In this review, a series of in vitro imaging techniques for metallic NP will be introduced, meanwhile their strengths and weaknesses will be discussed. By utilizing these imaging methods, the cellular uptake of metallic NP can be easily visualized to better understand the endocytic mechanisms of NP intracellular delivery. Several types of metallic NP that are used for imaging or as contrast agents such as quantum dots, gold, iron oxide, and other metallic NP will be presented. Cellular uptake of metallic NP and associated endocytic mechanisms highly depends upon the NP size, charge, surface coating, shape, or other factors such as cell type, cell differentiation status, cell surface status, external forces, protein binding, temperature, and the biological milieu. Classical endocytic routes such as lipid raft-mediated pathways, clathrin or caveolae-mediated pathways, macropinocytosis, and phagocytosis have been investigated, yet there is still a demand to determine other endocytic pathways. Knowing the different methodologies used to determine the endocytic pathways will increase the understanding of NP toxicity, cancer cell targeting, and imaging, so that surface coatings can be created for efficient cell uptake of metallic NP with minimal cytotoxicity WIREs Nanomed Nanobiotechnol 2017, 9:e1419. doi: 10.1002/wnan.1419 For further resources related to this article, please visit the WIREs website.

Measurement of Stress Redistribution in Flowing Emulsions

We study how local rearrangements alter droplet stresses within flowing dense quasi-two-dimensional emulsions at area fractions ϕ≥0.88. Using microscopy, we measure droplet positions while simultaneously using their deformed shape to measure droplet stresses. We find that rearrangements alter nearby stresses in a quadrupolar pattern: stresses on neighboring droplets tend to either decrease or increase depending on location. The stress redistribution is more anisotropic with increasing ϕ. The spatial character of the stress redistribution influences where subsequent rearrangements occur. Our results provide direct quantitative support for rheological theories of dense amorphous materials that connect local rearrangements to changes in nearby stress.

Experimental observation of local rearrangements in dense quasi-two-dimensional emulsion flow

We experimentally study rearranging regions in slow athermal flow by observing the flow of a concentrated oil-in-water emulsion in a thin chamber with a constricting hopper shape. The gap of the chamber is smaller than the droplet diameters, so that the droplets are compressed into quasi-two-dimensional pancakes. We focus on localized rearrangements known as "T1 events" where four droplets exchange neighbors. Flowing droplets are deformed due to forces from neighboring droplets, and these deformations are decreased by nearby T1 events, with a spatial dependence related to the local structure. We see a tendency of the T1 events to occur in small clusters.

Affine and nonaffine motions in sheared polydisperse emulsions

We study dense and highly polydisperse emulsions at droplet volume fractions ϕ≥0.65. We apply oscillatory shear and observe droplet motion using confocal microscopy. The presence of droplets with sizes several times the mean size dramatically changes the motion of smaller droplets. Both affine and nonaffine droplet motions are observed, with the more nonaffine motion exhibited by the smaller droplets which are pushed around by the larger droplets. Droplet motions are correlated over length scales from one to four times the mean droplet diameter, with larger length scales corresponding to higher strain amplitudes (up to strains of about 6%).

A microscopic view of the yielding transition in concentrated emulsions

We use a custom shear cell coupled to an optical microscope to investigate at the particle level the yielding transition in concentrated emulsions subjected to an oscillatory shear deformation. By performing experiments lasting thousands of cycles on samples at several volume fractions and for a variety of applied strain amplitudes, we obtain a comprehensive, microscopic picture of the yielding transition. We find that irreversible particle motion sharply increases beyond a volume-fraction dependent critical strain, which is found to be in close agreement with the strain beyond which the stress-strain relation probed in rheology experiments significantly departs from linearity. The shear-induced dynamics are very heterogenous: quiescent particles coexist with two distinct populations of mobile and 'supermobile' particles. Dynamic activity exhibits spatial and temporal correlations, with rearrangements events organized in bursts of motion affecting localized regions of the sample. Analogies with other sheared soft materials and with recent work on the transition to irreversibility in sheared complex fluids are briefly discussed.

Plasticity of a colloidal polycrystal under cyclic shear

We use confocal microscopy and time-resolved light scattering to investigate plasticity in a colloidal polycrystal, following the evolution of the network of grain boundaries as the sample is submitted to thousands of shear deformation cycles. The grain boundary motion is found to be ballistic, with a velocity distribution function exhibiting nontrivial power law tails. The shear-induced dynamics initially slow down, similarly to the aging of the spontaneous dynamics in glassy materials, but eventually reach a steady state. Surprisingly, the crossover time between the initial aging regime and the steady state decreases with increasing probed length scale, hinting at a hierarchical organization of the grain boundary dynamics.

Heterogeneous relaxation dynamics in amorphous materials under cyclic loading

Molecular dynamics simulations are performed to investigate heterogeneous dynamics in amorphous glassy materials under oscillatory shear strain. We consider three-dimensional binary Lennard-Jones mixture well below the glass transition temperature. The structural relaxation and dynamical heterogeneity are quantified by means of the self-overlap order parameter and the dynamic susceptibility. We found that at sufficiently small strain amplitudes, the mean square displacement exhibits a broad subdiffusive plateau and the system undergoes nearly reversible deformation over about 10(4) cycles. Upon increasing strain amplitude, the transition to the diffusive regime occurs at shorter time intervals and the relaxation process involves intermittent bursts of large particle displacements. The detailed analysis of particle hopping dynamics and the dynamic susceptibility indicates that mobile particles aggregate into clusters whose sizes increase at larger strain amplitudes. Finally, the correlation between particle mobilities in consecutive time intervals demonstrates that dynamic facilitation becomes increasingly pronounced at larger strain amplitudes.

Quantifying stretching and rearrangement in epithelial sheet migration

Although understanding the collective migration of cells, such as that seen in epithelial sheets, is essential for understanding diseases such as metastatic cancer, this motion is not yet as well characterized as individual cell migration. Here we adapt quantitative metrics used to characterize the flow and deformation of soft matter to contrast different types of motion within a migrating sheet of cells. Using a Finite-Time Lyapunov Exponent (FTLE) analysis, we find that - in spite of large fluctuations - the flow field of an epithelial cell sheet is not chaotic. Stretching of a sheet of cells (i.e., positive FTLE) is localized at the leading edge of migration and increases when the cells are more highly stimulated. By decomposing the motion of the cells into affine and non-affine components using the metric D2min , we quantify local plastic rearrangements and describe the motion of a group of cells in a novel way. We find an increase in plastic rearrangements with increasing cell densities, whereas inanimate systems tend to exhibit less non-affine rearrangements with increasing density.

Granular convection in microgravity

We investigate the role of gravity on convection in a dense granular shear flow. Using a microgravity-modified Taylor-Couette shear cell under the conditions of parabolic flight microgravity, we demonstrate experimentally that secondary, convective-like flows in a sheared granular material are close to zero in microgravity and enhanced under high-gravity conditions, though the primary flow fields are unaffected by gravity. We suggest that gravity tunes the frictional particle-particle and particle-wall interactions, which have been proposed to drive the secondary flow. In addition, the degree of plastic deformation increases with increasing gravitational forces, supporting the notion that friction is the ultimate cause.

The physics of the colloidal glass transition

As one increases the concentration of a colloidal suspension, the system exhibits a dramatic increase in viscosity. Beyond a certain concentration, the system is said to be a colloidal glass; structurally, the system resembles a liquid, yet motions within the suspension are slow enough that it can be considered essentially frozen. For several decades, colloids have served as a valuable model system for understanding the glass transition in molecular systems. The spatial and temporal scales involved allow these systems to be studied by a wide variety of experimental techniques. The focus of this review is the current state of understanding of the colloidal glass transition, with an emphasis on experimental observations. A brief introduction is given to important experimental techniques used to study the glass transition in colloids. We describe features of colloidal systems near and in glassy states, including increases in viscosity and relaxation times, dynamical heterogeneity and ageing, among others. We also compare and contrast the glass transition in colloids to that in molecular liquids. Other glassy systems are briefly discussed, as well as recently developed synthesis techniques that will keep these systems rich with interesting physics for years to come.

Nonaffine measures of particle displacements in sheared colloidal glasses

The nonaffine motion of particles is central to the relaxation and flow of glasses. It is usually assumed in plasticity theories that nonaffine rearrangements are localized and uncorrelated. Here we present evidence that this assumption may not hold. We investigate and compare systematically different measures of nonaffinity in a sheared colloidal glass by tracking the motion of the individual particles directly with confocal microscopy. We show that besides differences in the appearance and degree of localization of nonaffine displacements, the nature of their fluctuations is very similar. At intermediate times, all spatial correlation functions display robust power-law behavior, clearly demonstrating long-range correlations and critical behavior of the driven glass, in contrast to the assumptions of plasticity theories. We show that on long-time scales, correlations become finite and plasticity theories may apply.

Connecting structural relaxation with the low frequency modes in a hard-sphere colloidal glass

Structural relaxation in hard-sphere colloidal glasses has been studied using confocal microscopy. The motion of individual particles is followed over long time scales to detect the rearranging regions in the system. We have used normal mode analysis to understand the origin of the rearranging regions. The low-frequency modes, obtained over short time scales, show strong spatial correlation with the rearrangements that happen on long time scales.

Tracking rotational diffusion of colloidal clusters

We describe a novel method of tracking the rotational motion of clusters of colloidal particles. Our method utilizes rigid body transformations to determine the rotations of a cluster and extends conventional proven particle tracking techniques in a simple way, thus facilitating the study of rotational dynamics in systems containing or composed of colloidal clusters. We test our method by measuring dynamical properties of simulated Brownian clusters under conditions relevant to microscopy experiments. We then use the technique to track and describe the motions of a real colloidal cluster imaged with confocal microscopy.

Plastic deformations in complex plasmas

Complex plasmas are macroscopic model systems of real solids and liquids, used to study underdamped dynamics and wave phenomena. Plastic deformations of complex plasma crystals under slow uniaxial compression have been studied experimentally and numerically. It is shown that the lattice becomes locally sheared and that this strain is relaxed by shear slips resulting in global uniform compression and heat generation. Shear slips generate pairs of dislocations which move in opposite directions at subsonic speeds.