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For: Fiore CE, da Luz MGE. Comparing parallel- and simulated-tempering-enhanced sampling algorithms at phase-transition regimes. Phys Rev E Stat Nonlin Soft Matter Phys 2010;82:031104. [PMID: 21230022 DOI: 10.1103/physreve.82.031104] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2010] [Revised: 07/05/2010] [Indexed: 05/30/2023]
Number Cited by Other Article(s)
1
Rimas Z, Taraskin SN. A single-walker approach for studying quasi-nonergodic systems. Sci Rep 2017;7:2242. [PMID: 28533539 PMCID: PMC5440385 DOI: 10.1038/s41598-017-01704-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2017] [Accepted: 03/30/2017] [Indexed: 11/09/2022]  Open
2
Nagai T, Pantelopulos GA, Takahashi T, Straub JE. On the use of mass scaling for stable and efficient simulated tempering with molecular dynamics. J Comput Chem 2016;37:2017-28. [PMID: 27338239 DOI: 10.1002/jcc.24430] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2016] [Revised: 04/30/2016] [Accepted: 05/30/2016] [Indexed: 01/12/2023]
3
Li D, Liu B, Guo B, Xu F, Yang C, Chen C, Zhang Y, Zhai Z. Investigation on bioactive protection of LEA protein to insulin by molecular simulation. MOLECULAR SIMULATION 2013. [DOI: 10.1080/08927022.2012.708871] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
4
Fiore CE, da Luz MGE. Exploiting a semi-analytic approach to study first order phase transitions. J Chem Phys 2013;138:014105. [DOI: 10.1063/1.4772809] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
5
Fiore CE, da Luz MGE. General approach for studying first-order phase transitions at low temperatures. PHYSICAL REVIEW LETTERS 2011;107:230601. [PMID: 22182076 DOI: 10.1103/physrevlett.107.230601] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2011] [Indexed: 05/31/2023]
6
Fiore CE. Comparing different protocols of temperature selection in the parallel tempering method. J Chem Phys 2011;135:114107. [DOI: 10.1063/1.3636382] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
7
Fiore CE, da Luz MGE. A simple protocol for the probability weights of the simulated tempering algorithm: applications to first-order phase transitions. J Chem Phys 2010;133:244102. [PMID: 21197971 DOI: 10.1063/1.3519813] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]  Open
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