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Skákala J, Lazzari P. Low complexity model to study scale dependence of phytoplankton dynamics in the tropical Pacific. Phys Rev E 2021; 103:012401. [PMID: 33601500 DOI: 10.1103/physreve.103.012401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2020] [Accepted: 12/01/2020] [Indexed: 11/07/2022]
Abstract
We demonstrate that a simple model based on reaction-diffusion-advection (RDA) equation forced by realistic surface velocities and nutrients is skilled in reproducing the distributions of the surface phytoplankton chlorophyll in the tropical Pacific. We use the low-complexity RDA model to investigate the scale relationships in the impact of different drivers (turbulent diffusion, mean and eddy advection, primary productivity) on the phytoplankton chlorophyll concentrations. We find that in the 1/4^{∘} (∼25 km) model, advection has a substantial impact on the rate of primary productivity, while the turbulent diffusion term has a fairly negligible impact. Turbulent diffusion has an impact on the phytoplankton variability, with the impact being scale propagated and amplified by the larger scale surface currents. We investigate the impact of a surface nutrient decline and some changes to mesoscale eddy kinetic energy (climate change projections) on the surface phytoplankton concentrations. The RDA model suggests that unless mesoscale eddies radically change, phytoplankton chlorophyll scales sublinearly with the nutrients, and it is relatively stable with respect to the nutrient concentrations. Furthermore, we explore how a white multiplicative Gaussian noise introduced into the RDA model on its resolution scale propagates across spatial scales through the nonlinear model dynamics under different sets of phytoplankton drivers. The unifying message of this work is that the low-complexity (e.g., RDA) models can be successfully used to realistically model some specific aspects of marine ecosystem dynamics and by using those models one can explore many questions that would be beyond computational affordability of the higher-complexity ecosystem models.
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Affiliation(s)
- Jozef Skákala
- Plymouth Marine Laboratory, Prospect Place, PL1 3DH Plymouth, United Kingdom
- National Centre for Earth Observation, PL1 3DH Plymouth, United Kingdom
| | - Paolo Lazzari
- National Institute of Oceanography and Applied Geophysics-OGS, Trieste, 34151, Italy
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Amato A, Dell'Aquila G, Musacchia F, Annunziata R, Ugarte A, Maillet N, Carbone A, Ribera d'Alcalà M, Sanges R, Iudicone D, Ferrante MI. Marine diatoms change their gene expression profile when exposed to microscale turbulence under nutrient replete conditions. Sci Rep 2017. [PMID: 28630429 PMCID: PMC5476593 DOI: 10.1038/s41598-017-03741-6] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
Diatoms are a fundamental microalgal phylum that thrives in turbulent environments. Despite several experimental and numerical studies, if and how diatoms may profit from turbulence is still an open question. One of the leading arguments is that turbulence favours nutrient uptake. Morphological features, such as the absence of flagella, the presence of a rigid exoskeleton and the micrometre size would support the possible passive but beneficial role of turbulence on diatoms. We demonstrate that in fact diatoms actively respond to turbulence in non-limiting nutrient conditions. TURBOGEN, a prototypic instrument to generate natural levels of microscale turbulence, was used to expose diatoms to the mechanical stimulus. Differential expression analyses, coupled with microscopy inspections, enabled us to study the morphological and transcriptional response of Chaetoceros decipiens to turbulence. Our target species responds to turbulence by activating energy storage pathways like fatty acid biosynthesis and by modifying its cell chain spectrum. Two other ecologically important species were examined and the occurrence of a morphological response was confirmed. These results challenge the view of phytoplankton as unsophisticated passive organisms.
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Affiliation(s)
- Alberto Amato
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy.,Laboratoire de Physiologie Cellulaire et Végétale, UMR5168 CNRS-CEA-INRA-Université de Grenoble Alpes, Institut de Recherche en Science et Technologies pour le Vivant, CEA Grenoble, 17 rue des Martyrs, 38054, Grenoble Cédex 9, France
| | - Gianluca Dell'Aquila
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy.,Zellbiologie Philipps-Universität Marburg, Karl-von-Frisch Str, 8 35043, Marburg, Germany
| | - Francesco Musacchia
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy.,Telethon Institute for Genetics and Medicine (TIGEM), Viale Campi Flegrei 34, 80078, Pozzuoli - Naples, Italy
| | | | - Ari Ugarte
- Sorbonne Universités, UPMC Univ-Paris 6, CNRS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative, 15 rue de l'Ecole de Médecine, 75006, Paris, France
| | - Nicolas Maillet
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy.,Institut Pasteur - Bioinformatics and Biostatistics Hub - C3BI - CNRS, USR 3756 25-28 Rue du Dr Roux, 75015, Paris, France
| | - Alessandra Carbone
- Sorbonne Universités, UPMC Univ-Paris 6, CNRS, UMR 7238, Laboratoire de Biologie Computationnelle et Quantitative, 15 rue de l'Ecole de Médecine, 75006, Paris, France.,Institut Universitaire de France, 75005, Paris, France
| | | | - Remo Sanges
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy
| | - Daniele Iudicone
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy
| | - Maria I Ferrante
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy.
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Grošelj D, Jenko F, Frey E. How turbulence regulates biodiversity in systems with cyclic competition. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 91:033009. [PMID: 25871204 DOI: 10.1103/physreve.91.033009] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2014] [Indexed: 06/04/2023]
Abstract
Cyclic, nonhierarchical interactions among biological species represent a general mechanism by which ecosystems are able to maintain high levels of biodiversity. However, species coexistence is often possible only in spatially extended systems with a limited range of dispersal, whereas in well-mixed environments models for cyclic competition often lead to a loss of biodiversity. Here we consider the dispersal of biological species in a fluid environment, where mixing is achieved by a combination of advection and diffusion. In particular, we perform a detailed numerical analysis of a model composed of turbulent advection, diffusive transport, and cyclic interactions among biological species in two spatial dimensions and discuss the circumstances under which biodiversity is maintained when external environmental conditions, such as resource supply, are uniform in space. Cyclic interactions are represented by a model with three competitors, resembling the children's game of rock-paper-scissors, whereas the flow field is obtained from a direct numerical simulation of two-dimensional turbulence with hyperviscosity. It is shown that the space-averaged dynamics undergoes bifurcations as the relative strengths of advection and diffusion compared to biological interactions are varied.
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Affiliation(s)
- Daniel Grošelj
- Max-Planck-Institut für Plasmaphysik, Boltzmannstraße 2, D-85748 Garching, Germany
| | - Frank Jenko
- Max-Planck-Institut für Plasmaphysik, Boltzmannstraße 2, D-85748 Garching, Germany
- Department of Physics and Astronomy, University of California, Los Angeles, California 90095-1547, USA
| | - Erwin Frey
- Arnold Sommerfeld Center for Theoretical Physics and Center for NanoScience, Department of Physics, Ludwig-Maximilians-Universität München, Theresienstraße 37, D-80333 München, Germany
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Olla P. Effect of demographic noise in a phytoplankton-zooplankton model of bloom dynamics. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 87:012712. [PMID: 23410364 DOI: 10.1103/physreve.87.012712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2012] [Revised: 09/27/2012] [Indexed: 06/01/2023]
Abstract
An extension of the Truscott-Brindley model [Bull. Math. Biol. 56, 981 (1994)] is derived to account for the effect of demographic fluctuations. In the presence of seasonal forcing and sufficiently shallow water conditions, the fluctuations induced by the discreteness of the zooplankton component appear sufficient to cause switching between the bloom and no-bloom cycles predicted at the mean-field level by the model. The destabilization persists in the thermodynamic limit of a water basin infinitely extended in the horizontal direction.
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Affiliation(s)
- Piero Olla
- ISAC-CNR and INFN, Sez. Cagliari, I-09042 Monserrato, Italy
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Neufeld Z. Stirring effects in models of oceanic plankton populations. CHAOS (WOODBURY, N.Y.) 2012; 22:037102. [PMID: 23020493 DOI: 10.1063/1.4751329] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
We present an overview and extend previous results on the effects of large scale oceanic transport processes on plankton population dynamics, considering different types of ecosystem models. We find that increasing stirring rate in an environment where the carrying capacity is non-uniformly distributed leads to an overall decrease of the effective carrying capacity of the system. This may lead to sharp regime shifts induced by stirring in systems with multiple steady states. In prey-predator type systems, stirring leads to resonant response of the population dynamics to fluctuations enhancing the spatial variability-patchiness-in a certain range of stirring rates. Oscillatory population models produce strongly heterogeneous patchy distribution of plankton blooms when the stirring is weak, while strong stirring may either synchronise the oscillatory dynamics, when the inhomogeneity is relatively weak, or suppress oscillations completely (oscillator death) by reducing the effective carrying capacity below the bifurcation point.
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Affiliation(s)
- Zoltan Neufeld
- School of Mathematics and Physics, University of Queensland, Australia
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